Difference between revisions of "NONHSAT004242"
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sequence = <dnaseq>CTGTTCCCGCCCCCGACCGGAGCCTTTCGGGTGGCTCCGCCCACAGCGGGCGTTTCCTCAAGCCACGCCTGCGCAGGTCGTCGGGGGAGACTGATGAAGAGACGACTATCCCCAGACCGTATTTTAACTACTATGGCGCTGTGTAAGAAGCAACCTGAGAAGTGTGGATGAAAAGCTACAGCTTCCCTGCTGAAATACCTTAGTGAGAATGCATAAAAACCAACTCTAAATGATGCACAAAGCCACCGAGAGTGACATTCACAATGAGCATTTACCCAGCATTTTGTGCTGGCATCTTCCAGGATGTACAAGCATCCCAACATAGTCTCAGATTCTTGGTCCCTGGCACTGGCAGAGCTGAAATGGTCATATTCCCACTGGCCTCTGGTTACATGATCCATGCTGCCTTCTGTAGTCACATATTATTTGTGATAACAAACAAGACTGGACTGGATCCTGAATTCTTTTAGTGCACTACCTCCAGTATCTAGCTTCAACTCTTCAACTAAGAGCAAAAGTGCTAAGCTGGACAACTTGATAGAAATTTCAAGGGACAAGTCTCATGTGTGATGTGCGTGCCATACAGAGAGTTCACCAGAATATCTAACGCCACAACCAGGGACATTCAAACTGCAAACCAGGTTGAGAATTTGCTAACTGCATGCCGTGGACAGCTTTTCCCAAGGCCATCAGATGAAGACTTCTTATGATATTCTTACCCCTCTTAATTTTTCCTTGCTTATGCCTACTTCTTTCGCTTGGCAGAATAAGGCTATGGTTAAAGTTTCACAATCCTTAGTTTTTGTGAGTAATCTGACAGCATGTTGAATCTGTTATGTCAAATCTGAATCTTTAAAAAACCTGAGATCCTTTAGTCCACCTAGTGGGTAACTTCAGCAACATCCCTAATATCCCTAATGCAACTGTTTGTTCAAATTGTACTAGTGATCTCTTTTATAGAGTTAGTACTGTCTGTTTTAATTTAACCCATTCCTGGAATGCTATATGATAGAATTGCTACCGACTAAATGAATAGGGAGAAATCTGTGCAATTGCTAATACTTCTTGTTACCCATAGATATAATGAGTATCCGGCCTGGCTCATTCTTTGATCTATTTAATTTCAGTTGGTTTAGTTTATGGGGATCCTAGATAAAGGAGCATACTCCAAACTCCTGGCATTATCCTTTTGATAGTCATAATAGTAGTTTCTCTGGTACACTATATCCTCTCGAAAAGTTTTAAAGGTTGCACACAGCCATTCATCAAACACCAAAGAGTCTCTTTTCTGCTGGAATGACAAAAACTCAAATAAATGCATGATGATGAGTACACCATAACCTATGAATGACTTGTAGAGACCAGAAACCCAGCATGATAATAAGAGTAGCATTAATGCCCTTAGTTTTGGTCATGCACTCACCCAGGTGAAAGCATGACTGAAAGGGGAAAATTGTTAAATACAAAATATAGGAGGCCATTGTTTTGGACTAAGCTTCTGCACTAGGCCCCACAGCTCCTGCATTAGGCCCCAACAGATTTGACTAAAAATCAAAATGGAGTTATCCATGCTGAAGTTCCACATCACCAAACTGAAACTAAGTTGTTATATAACATTCCAAGAAAGCAGGAGAGAGAGATAGCAGCCAATTTCCCAAATAGGCCAATTTCAATCTTCAATCAGTAGGATAATAGTTTCCTCTGTTTTAATCCTTAAAAGTAACCTGATGCTAACCAATCTTTCTATTTTTCTGCCTCCCTGTCCCTGCCTTTCAAGGAAAGTAACTTTGAAATAATCAATCTGTTTTTTGTTCTTCATTTTTGCTTTCCTTAGCCCTTTCTGTCTATAAAACCAACCCCTTCTGTTCAACTCACTGGCAAATTTATTGTATTTTATGGCATAAAATGTTGCCTGATTCTAGAATTGCAATAAAGCCAACCGTGATCTTT</dnaseq>| | sequence = <dnaseq>CTGTTCCCGCCCCCGACCGGAGCCTTTCGGGTGGCTCCGCCCACAGCGGGCGTTTCCTCAAGCCACGCCTGCGCAGGTCGTCGGGGGAGACTGATGAAGAGACGACTATCCCCAGACCGTATTTTAACTACTATGGCGCTGTGTAAGAAGCAACCTGAGAAGTGTGGATGAAAAGCTACAGCTTCCCTGCTGAAATACCTTAGTGAGAATGCATAAAAACCAACTCTAAATGATGCACAAAGCCACCGAGAGTGACATTCACAATGAGCATTTACCCAGCATTTTGTGCTGGCATCTTCCAGGATGTACAAGCATCCCAACATAGTCTCAGATTCTTGGTCCCTGGCACTGGCAGAGCTGAAATGGTCATATTCCCACTGGCCTCTGGTTACATGATCCATGCTGCCTTCTGTAGTCACATATTATTTGTGATAACAAACAAGACTGGACTGGATCCTGAATTCTTTTAGTGCACTACCTCCAGTATCTAGCTTCAACTCTTCAACTAAGAGCAAAAGTGCTAAGCTGGACAACTTGATAGAAATTTCAAGGGACAAGTCTCATGTGTGATGTGCGTGCCATACAGAGAGTTCACCAGAATATCTAACGCCACAACCAGGGACATTCAAACTGCAAACCAGGTTGAGAATTTGCTAACTGCATGCCGTGGACAGCTTTTCCCAAGGCCATCAGATGAAGACTTCTTATGATATTCTTACCCCTCTTAATTTTTCCTTGCTTATGCCTACTTCTTTCGCTTGGCAGAATAAGGCTATGGTTAAAGTTTCACAATCCTTAGTTTTTGTGAGTAATCTGACAGCATGTTGAATCTGTTATGTCAAATCTGAATCTTTAAAAAACCTGAGATCCTTTAGTCCACCTAGTGGGTAACTTCAGCAACATCCCTAATATCCCTAATGCAACTGTTTGTTCAAATTGTACTAGTGATCTCTTTTATAGAGTTAGTACTGTCTGTTTTAATTTAACCCATTCCTGGAATGCTATATGATAGAATTGCTACCGACTAAATGAATAGGGAGAAATCTGTGCAATTGCTAATACTTCTTGTTACCCATAGATATAATGAGTATCCGGCCTGGCTCATTCTTTGATCTATTTAATTTCAGTTGGTTTAGTTTATGGGGATCCTAGATAAAGGAGCATACTCCAAACTCCTGGCATTATCCTTTTGATAGTCATAATAGTAGTTTCTCTGGTACACTATATCCTCTCGAAAAGTTTTAAAGGTTGCACACAGCCATTCATCAAACACCAAAGAGTCTCTTTTCTGCTGGAATGACAAAAACTCAAATAAATGCATGATGATGAGTACACCATAACCTATGAATGACTTGTAGAGACCAGAAACCCAGCATGATAATAAGAGTAGCATTAATGCCCTTAGTTTTGGTCATGCACTCACCCAGGTGAAAGCATGACTGAAAGGGGAAAATTGTTAAATACAAAATATAGGAGGCCATTGTTTTGGACTAAGCTTCTGCACTAGGCCCCACAGCTCCTGCATTAGGCCCCAACAGATTTGACTAAAAATCAAAATGGAGTTATCCATGCTGAAGTTCCACATCACCAAACTGAAACTAAGTTGTTATATAACATTCCAAGAAAGCAGGAGAGAGAGATAGCAGCCAATTTCCCAAATAGGCCAATTTCAATCTTCAATCAGTAGGATAATAGTTTCCTCTGTTTTAATCCTTAAAAGTAACCTGATGCTAACCAATCTTTCTATTTTTCTGCCTCCCTGTCCCTGCCTTTCAAGGAAAGTAACTTTGAAATAATCAATCTGTTTTTTGTTCTTCATTTTTGCTTTCCTTAGCCCTTTCTGTCTATAAAACCAACCCCTTCTGTTCAACTCACTGGCAAATTTATTGTATTTTATGGCATAAAATGTTGCCTGATTCTAGAATTGCAATAAAGCCAACCGTGATCTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG001968]] | + | [[Category:Antisense]][[Category:NONHSAG001968]][[Category:Transcripts]] |
Latest revision as of 19:31, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004242 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1950 nt |
Genomic location |
chr1+:85742398..85865646 |
Exon number |
5 |
Exons |
85742398..85742480,85743324..85743421,85842449..85842518,85846057..85846248,85864140..85865646 |
Genome context |
|
Sequence |
000001 CTGTTCCCGC CCCCGACCGG AGCCTTTCGG GTGGCTCCGC CCACAGCGGG CGTTTCCTCA AGCCACGCCT GCGCAGGTCG 000080
000081 TCGGGGGAGA CTGATGAAGA GACGACTATC CCCAGACCGT ATTTTAACTA CTATGGCGCT GTGTAAGAAG CAACCTGAGA 000160 000161 AGTGTGGATG AAAAGCTACA GCTTCCCTGC TGAAATACCT TAGTGAGAAT GCATAAAAAC CAACTCTAAA TGATGCACAA 000240 000241 AGCCACCGAG AGTGACATTC ACAATGAGCA TTTACCCAGC ATTTTGTGCT GGCATCTTCC AGGATGTACA AGCATCCCAA 000320 000321 CATAGTCTCA GATTCTTGGT CCCTGGCACT GGCAGAGCTG AAATGGTCAT ATTCCCACTG GCCTCTGGTT ACATGATCCA 000400 000401 TGCTGCCTTC TGTAGTCACA TATTATTTGT GATAACAAAC AAGACTGGAC TGGATCCTGA ATTCTTTTAG TGCACTACCT 000480 000481 CCAGTATCTA GCTTCAACTC TTCAACTAAG AGCAAAAGTG CTAAGCTGGA CAACTTGATA GAAATTTCAA GGGACAAGTC 000560 000561 TCATGTGTGA TGTGCGTGCC ATACAGAGAG TTCACCAGAA TATCTAACGC CACAACCAGG GACATTCAAA CTGCAAACCA 000640 000641 GGTTGAGAAT TTGCTAACTG CATGCCGTGG ACAGCTTTTC CCAAGGCCAT CAGATGAAGA CTTCTTATGA TATTCTTACC 000720 000721 CCTCTTAATT TTTCCTTGCT TATGCCTACT TCTTTCGCTT GGCAGAATAA GGCTATGGTT AAAGTTTCAC AATCCTTAGT 000800 000801 TTTTGTGAGT AATCTGACAG CATGTTGAAT CTGTTATGTC AAATCTGAAT CTTTAAAAAA CCTGAGATCC TTTAGTCCAC 000880 000881 CTAGTGGGTA ACTTCAGCAA CATCCCTAAT ATCCCTAATG CAACTGTTTG TTCAAATTGT ACTAGTGATC TCTTTTATAG 000960 000961 AGTTAGTACT GTCTGTTTTA ATTTAACCCA TTCCTGGAAT GCTATATGAT AGAATTGCTA CCGACTAAAT GAATAGGGAG 001040 001041 AAATCTGTGC AATTGCTAAT ACTTCTTGTT ACCCATAGAT ATAATGAGTA TCCGGCCTGG CTCATTCTTT GATCTATTTA 001120 001121 ATTTCAGTTG GTTTAGTTTA TGGGGATCCT AGATAAAGGA GCATACTCCA AACTCCTGGC ATTATCCTTT TGATAGTCAT 001200 001201 AATAGTAGTT TCTCTGGTAC ACTATATCCT CTCGAAAAGT TTTAAAGGTT GCACACAGCC ATTCATCAAA CACCAAAGAG 001280 001281 TCTCTTTTCT GCTGGAATGA CAAAAACTCA AATAAATGCA TGATGATGAG TACACCATAA CCTATGAATG ACTTGTAGAG 001360 001361 ACCAGAAACC CAGCATGATA ATAAGAGTAG CATTAATGCC CTTAGTTTTG GTCATGCACT CACCCAGGTG AAAGCATGAC 001440 001441 TGAAAGGGGA AAATTGTTAA ATACAAAATA TAGGAGGCCA TTGTTTTGGA CTAAGCTTCT GCACTAGGCC CCACAGCTCC 001520 001521 TGCATTAGGC CCCAACAGAT TTGACTAAAA ATCAAAATGG AGTTATCCAT GCTGAAGTTC CACATCACCA AACTGAAACT 001600 001601 AAGTTGTTAT ATAACATTCC AAGAAAGCAG GAGAGAGAGA TAGCAGCCAA TTTCCCAAAT AGGCCAATTT CAATCTTCAA 001680 001681 TCAGTAGGAT AATAGTTTCC TCTGTTTTAA TCCTTAAAAG TAACCTGATG CTAACCAATC TTTCTATTTT TCTGCCTCCC 001760 001761 TGTCCCTGCC TTTCAAGGAA AGTAACTTTG AAATAATCAA TCTGTTTTTT GTTCTTCATT TTTGCTTTCC TTAGCCCTTT 001840 001841 CTGTCTATAA AACCAACCCC TTCTGTTCAA CTCACTGGCA AATTTATTGT ATTTTATGGC ATAAAATGTT GCCTGATTCT 001920 001921 AGAATTGCAA TAAAGCCAAC CGTGATCTTT |
Predicted Small Protein
Name | NONHSAT004242_smProtein_263:469 |
Length | 69 |
Molecular weight | 7511.6989 |
Aromaticity | 0.147058823529 |
Instability index | 50.2794117647 |
Isoelectric point | 6.21929931641 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0547847312553 |
Amino acid sequence | MSIYPAFCAGIFQDVQASQHSLRFLVPGTGRAEMVIFPLASGYMIHAAFCSHILFVITNK TGLDPEFF |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHLLEEELLLLLEEEEEEELLLHHHHHHHHHLLEEEEEELL LLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiii iiiiiiii |