Difference between revisions of "NONHSAT004576"

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sequence = <dnaseq>CCTTGTGGGAGGCGTATTGTCCAAGATGATGCGTATTGTCCAAACGACTCAGAAGAAGTCATTTCTGAAGGGTTGATCATAACTTCCCTAGCCATGTTTTACCTACAGAGAACTTAGTTAGAATTTATGAGTACAGTATGTTAAATTACTTTTAGTGTACCTTAGGCAGTGTATTTGTTCTGATACAGAGACAAAGACTATATGATCCCTGAGACTTGTTGCCTAGTGAACTCACAAGCAGATAGAATTGTACCTCAGTTATTTGGGTGATTTAAAGATGGTACTATGGCTACACTATTCACAGCTATCGTTGTGTTACAGTATTTATACAACTGGAAACATCTCTCTAAATGACAACCATTGTATATTGTTAAATAACTTATAGTCAGTGGAATTCTGTGGGTTTTTCTTTCCTACAGGCAGGAAATTATGGTGATGTGTTGATATGATTATATATGTAGACTATTCAGTTAACATCTAGGAGTTAGCAAATTTGCTACATTCACAATCAGTATGTAAGTCAGTTGTATTCCTAGATATCAGCAACTAACAGAAATGGAAGTTTTTAGAAAGATCTCTTCAATATCATTAAAAAATACAAAATACTCTACCTAAGAATAAGTCTAACAAAAGATGTACAAGATCTTGATGGAGAAAATGTTAGACCATGTCAGGAAGCATTTAAGGAGATCTTAAATAAATGTAGTACTCCATAATGTACACGAATTAGAAGACTCAGTCGTGTAAAGATGTTCATTTACATTTGTAGATTCAATGTAATCCCAACCAAAATATTTTTTGCATTATTACCTCTATCTACTGTGTGTTTCCTTAAGACAAGGGCATTCCTACGTAACCATAGTACAACCATCAAACTTAGGAGATTGACATTGACATCATGATATCTAATCCATAGACCACATTCAATCTGCTGATTTTGATTGCCTCAGTAATGTTCCTGTGTTTCAGCATCCCAATCCAGGACCACATAGTGCATTTAGTTGCCCTATCTCTTGTTTCATTCAGTCCAGAACATCTTTTCAGACTTGTCTTTGACCTTGACACTTGAGGAGGATAGGCCAGTTTGTAGAAAGTTCCTCAGTTTTGGTTTATCATTAGATAAGACCCATAAGGTTTAGGATAGACATTTTTGTCCAATACTACAGAAATGATGCTCTATACTCAAATGTGTCATGCCAGGATGCACACAATGTCAATTTGTCTTATACCTGATAGTATTAATTTTGGTCACTTGGTTCAGATAGTATATACCAGGTTTCTCAATTGTAAAATTAGAATTAGGAAGTAATTTGTGAGGAGATTCTTAAAGATTGTAAATGTATTGTTTCTCATCGAATTGTCACGGGCTAGTCTATTGACAATTCTTGACTGAACCAATTACTATTTTGGTTGTCAAATGGTGAGTCCGTGGCTTCTGCCTTGGTTGGCATCCTACTACTGTAAGGAAGAGCTCTTCCTTCTCTATTCCTTCATTCACTTAAATCAGTATAGATTCATGAATGCCTGCTTTATTCAGTGACAGTGTATTATTGTCACTTATTTTCATGCTGAAATTTTCCCCGATTTGGTTTTTGGGAGTCTCTTCAAGCTGGCTTCTGTGTTCCTTAGAGATGCCTCATTGCTTTTTCCCCTCTTATTTTTTTTACGAGCTCATCTTACACTTTTTCCTACTCCCTACCCCAAGTCTAGAATTAGCCCTTTTTTCCAAGGAGCCCTGGTTTCTTTAAATGGGAAATGGTATATGGAAATGAAGACCTGAGAAAGGCTCGCTGTCTTATTGGTGAACAGCTCAAAGGAAAACGTGTGTCTACACACATTCAAGAATAGTCACCTACTTCTATATCTATTTATATACATACGTATTGAAAACTTTGAGTTCACATTGACACCTTCAATTCAATCCTTTGAGGTTAATCTAGTCTCCCTTTCCATCTTTGTAACTTCCTTCTCTCATAGAAACCTGACTTCCATAATCCTAAATAATTTGGTTCATTCTTCCTCCCTCCCTCAACCGCTTGACATGCCAGCTTCTTTCTCATCACACCCAGTCCCAAATATGCCAAATAAATCCGCAGTCATAGCAGCGCTGGTCCTGACCACACCAATCCCTAACATCCTCCCCAGCCTGGAGCCTGGACCATGGCAGCTGAATCTTTGACCCCAGTGATGTCAGTCCTGAGCACACCATTGGAATCCTAGGCTCCTGTCATCTGGCTGGAAGAGAGACAAATTCACAACCTTTTGATAATGAGCAATTATTGAATACTCACTGAATTTATCAGAGAAAGTTTAAAAGTGTACGATTATACATATTTACCAGGAATGTTTAAACATAGACATTTATGAAATTTATAGAAAATATTGAATTGTGGTTCTCACTTTTTGGTCTTGGCTGTAACAATTTTTAAATATTAATACTTCCTACAATAACTGTATCATGCTATTTTTAAGTGTCCTCACACTCAACCAATCTACTCTGCATCCATAAAATAAGCATGCAGTTCAGAAAATAGATTAAACGACTAATTGGCAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>CCTTGTGGGAGGCGTATTGTCCAAGATGATGCGTATTGTCCAAACGACTCAGAAGAAGTCATTTCTGAAGGGTTGATCATAACTTCCCTAGCCATGTTTTACCTACAGAGAACTTAGTTAGAATTTATGAGTACAGTATGTTAAATTACTTTTAGTGTACCTTAGGCAGTGTATTTGTTCTGATACAGAGACAAAGACTATATGATCCCTGAGACTTGTTGCCTAGTGAACTCACAAGCAGATAGAATTGTACCTCAGTTATTTGGGTGATTTAAAGATGGTACTATGGCTACACTATTCACAGCTATCGTTGTGTTACAGTATTTATACAACTGGAAACATCTCTCTAAATGACAACCATTGTATATTGTTAAATAACTTATAGTCAGTGGAATTCTGTGGGTTTTTCTTTCCTACAGGCAGGAAATTATGGTGATGTGTTGATATGATTATATATGTAGACTATTCAGTTAACATCTAGGAGTTAGCAAATTTGCTACATTCACAATCAGTATGTAAGTCAGTTGTATTCCTAGATATCAGCAACTAACAGAAATGGAAGTTTTTAGAAAGATCTCTTCAATATCATTAAAAAATACAAAATACTCTACCTAAGAATAAGTCTAACAAAAGATGTACAAGATCTTGATGGAGAAAATGTTAGACCATGTCAGGAAGCATTTAAGGAGATCTTAAATAAATGTAGTACTCCATAATGTACACGAATTAGAAGACTCAGTCGTGTAAAGATGTTCATTTACATTTGTAGATTCAATGTAATCCCAACCAAAATATTTTTTGCATTATTACCTCTATCTACTGTGTGTTTCCTTAAGACAAGGGCATTCCTACGTAACCATAGTACAACCATCAAACTTAGGAGATTGACATTGACATCATGATATCTAATCCATAGACCACATTCAATCTGCTGATTTTGATTGCCTCAGTAATGTTCCTGTGTTTCAGCATCCCAATCCAGGACCACATAGTGCATTTAGTTGCCCTATCTCTTGTTTCATTCAGTCCAGAACATCTTTTCAGACTTGTCTTTGACCTTGACACTTGAGGAGGATAGGCCAGTTTGTAGAAAGTTCCTCAGTTTTGGTTTATCATTAGATAAGACCCATAAGGTTTAGGATAGACATTTTTGTCCAATACTACAGAAATGATGCTCTATACTCAAATGTGTCATGCCAGGATGCACACAATGTCAATTTGTCTTATACCTGATAGTATTAATTTTGGTCACTTGGTTCAGATAGTATATACCAGGTTTCTCAATTGTAAAATTAGAATTAGGAAGTAATTTGTGAGGAGATTCTTAAAGATTGTAAATGTATTGTTTCTCATCGAATTGTCACGGGCTAGTCTATTGACAATTCTTGACTGAACCAATTACTATTTTGGTTGTCAAATGGTGAGTCCGTGGCTTCTGCCTTGGTTGGCATCCTACTACTGTAAGGAAGAGCTCTTCCTTCTCTATTCCTTCATTCACTTAAATCAGTATAGATTCATGAATGCCTGCTTTATTCAGTGACAGTGTATTATTGTCACTTATTTTCATGCTGAAATTTTCCCCGATTTGGTTTTTGGGAGTCTCTTCAAGCTGGCTTCTGTGTTCCTTAGAGATGCCTCATTGCTTTTTCCCCTCTTATTTTTTTTACGAGCTCATCTTACACTTTTTCCTACTCCCTACCCCAAGTCTAGAATTAGCCCTTTTTTCCAAGGAGCCCTGGTTTCTTTAAATGGGAAATGGTATATGGAAATGAAGACCTGAGAAAGGCTCGCTGTCTTATTGGTGAACAGCTCAAAGGAAAACGTGTGTCTACACACATTCAAGAATAGTCACCTACTTCTATATCTATTTATATACATACGTATTGAAAACTTTGAGTTCACATTGACACCTTCAATTCAATCCTTTGAGGTTAATCTAGTCTCCCTTTCCATCTTTGTAACTTCCTTCTCTCATAGAAACCTGACTTCCATAATCCTAAATAATTTGGTTCATTCTTCCTCCCTCCCTCAACCGCTTGACATGCCAGCTTCTTTCTCATCACACCCAGTCCCAAATATGCCAAATAAATCCGCAGTCATAGCAGCGCTGGTCCTGACCACACCAATCCCTAACATCCTCCCCAGCCTGGAGCCTGGACCATGGCAGCTGAATCTTTGACCCCAGTGATGTCAGTCCTGAGCACACCATTGGAATCCTAGGCTCCTGTCATCTGGCTGGAAGAGAGACAAATTCACAACCTTTTGATAATGAGCAATTATTGAATACTCACTGAATTTATCAGAGAAAGTTTAAAAGTGTACGATTATACATATTTACCAGGAATGTTTAAACATAGACATTTATGAAATTTATAGAAAATATTGAATTGTGGTTCTCACTTTTTGGTCTTGGCTGTAACAATTTTTAAATATTAATACTTCCTACAATAACTGTATCATGCTATTTTTAAGTGTCCTCACACTCAACCAATCTACTCTGCATCCATAAAATAAGCATGCAGTTCAGAAAATAGATTAAACGACTAATTGGCAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG002115]][[Category:Transcripts]]

Latest revision as of 19:32, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004576

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2568 nt

Genomic location

chr1-:94634465..94637015

Exon number

1

Exons

94634465..94637015

Genome context

Sequence
000001 CCTTGTGGGA GGCGTATTGT CCAAGATGAT GCGTATTGTC CAAACGACTC AGAAGAAGTC ATTTCTGAAG GGTTGATCAT 000080
000081 AACTTCCCTA GCCATGTTTT ACCTACAGAG AACTTAGTTA GAATTTATGA GTACAGTATG TTAAATTACT TTTAGTGTAC 000160
000161 CTTAGGCAGT GTATTTGTTC TGATACAGAG ACAAAGACTA TATGATCCCT GAGACTTGTT GCCTAGTGAA CTCACAAGCA 000240
000241 GATAGAATTG TACCTCAGTT ATTTGGGTGA TTTAAAGATG GTACTATGGC TACACTATTC ACAGCTATCG TTGTGTTACA 000320
000321 GTATTTATAC AACTGGAAAC ATCTCTCTAA ATGACAACCA TTGTATATTG TTAAATAACT TATAGTCAGT GGAATTCTGT 000400
000401 GGGTTTTTCT TTCCTACAGG CAGGAAATTA TGGTGATGTG TTGATATGAT TATATATGTA GACTATTCAG TTAACATCTA 000480
000481 GGAGTTAGCA AATTTGCTAC ATTCACAATC AGTATGTAAG TCAGTTGTAT TCCTAGATAT CAGCAACTAA CAGAAATGGA 000560
000561 AGTTTTTAGA AAGATCTCTT CAATATCATT AAAAAATACA AAATACTCTA CCTAAGAATA AGTCTAACAA AAGATGTACA 000640
000641 AGATCTTGAT GGAGAAAATG TTAGACCATG TCAGGAAGCA TTTAAGGAGA TCTTAAATAA ATGTAGTACT CCATAATGTA 000720
000721 CACGAATTAG AAGACTCAGT CGTGTAAAGA TGTTCATTTA CATTTGTAGA TTCAATGTAA TCCCAACCAA AATATTTTTT 000800
000801 GCATTATTAC CTCTATCTAC TGTGTGTTTC CTTAAGACAA GGGCATTCCT ACGTAACCAT AGTACAACCA TCAAACTTAG 000880
000881 GAGATTGACA TTGACATCAT GATATCTAAT CCATAGACCA CATTCAATCT GCTGATTTTG ATTGCCTCAG TAATGTTCCT 000960
000961 GTGTTTCAGC ATCCCAATCC AGGACCACAT AGTGCATTTA GTTGCCCTAT CTCTTGTTTC ATTCAGTCCA GAACATCTTT 001040
001041 TCAGACTTGT CTTTGACCTT GACACTTGAG GAGGATAGGC CAGTTTGTAG AAAGTTCCTC AGTTTTGGTT TATCATTAGA 001120
001121 TAAGACCCAT AAGGTTTAGG ATAGACATTT TTGTCCAATA CTACAGAAAT GATGCTCTAT ACTCAAATGT GTCATGCCAG 001200
001201 GATGCACACA ATGTCAATTT GTCTTATACC TGATAGTATT AATTTTGGTC ACTTGGTTCA GATAGTATAT ACCAGGTTTC 001280
001281 TCAATTGTAA AATTAGAATT AGGAAGTAAT TTGTGAGGAG ATTCTTAAAG ATTGTAAATG TATTGTTTCT CATCGAATTG 001360
001361 TCACGGGCTA GTCTATTGAC AATTCTTGAC TGAACCAATT ACTATTTTGG TTGTCAAATG GTGAGTCCGT GGCTTCTGCC 001440
001441 TTGGTTGGCA TCCTACTACT GTAAGGAAGA GCTCTTCCTT CTCTATTCCT TCATTCACTT AAATCAGTAT AGATTCATGA 001520
001521 ATGCCTGCTT TATTCAGTGA CAGTGTATTA TTGTCACTTA TTTTCATGCT GAAATTTTCC CCGATTTGGT TTTTGGGAGT 001600
001601 CTCTTCAAGC TGGCTTCTGT GTTCCTTAGA GATGCCTCAT TGCTTTTTCC CCTCTTATTT TTTTTACGAG CTCATCTTAC 001680
001681 ACTTTTTCCT ACTCCCTACC CCAAGTCTAG AATTAGCCCT TTTTTCCAAG GAGCCCTGGT TTCTTTAAAT GGGAAATGGT 001760
001761 ATATGGAAAT GAAGACCTGA GAAAGGCTCG CTGTCTTATT GGTGAACAGC TCAAAGGAAA ACGTGTGTCT ACACACATTC 001840
001841 AAGAATAGTC ACCTACTTCT ATATCTATTT ATATACATAC GTATTGAAAA CTTTGAGTTC ACATTGACAC CTTCAATTCA 001920
001921 ATCCTTTGAG GTTAATCTAG TCTCCCTTTC CATCTTTGTA ACTTCCTTCT CTCATAGAAA CCTGACTTCC ATAATCCTAA 002000
002001 ATAATTTGGT TCATTCTTCC TCCCTCCCTC AACCGCTTGA CATGCCAGCT TCTTTCTCAT CACACCCAGT CCCAAATATG 002080
002081 CCAAATAAAT CCGCAGTCAT AGCAGCGCTG GTCCTGACCA CACCAATCCC TAACATCCTC CCCAGCCTGG AGCCTGGACC 002160
002161 ATGGCAGCTG AATCTTTGAC CCCAGTGATG TCAGTCCTGA GCACACCATT GGAATCCTAG GCTCCTGTCA TCTGGCTGGA 002240
002241 AGAGAGACAA ATTCACAACC TTTTGATAAT GAGCAATTAT TGAATACTCA CTGAATTTAT CAGAGAAAGT TTAAAAGTGT 002320
002321 ACGATTATAC ATATTTACCA GGAATGTTTA AACATAGACA TTTATGAAAT TTATAGAAAA TATTGAATTG TGGTTCTCAC 002400
002401 TTTTTGGTCT TGGCTGTAAC AATTTTTAAA TATTAATACT TCCTACAATA ACTGTATCAT GCTATTTTTA AGTGTCCTCA 002480
002481 CACTCAACCA ATCTACTCTG CATCCATAAA ATAAGCATGC AGTTCAGAAA ATAGATTAAA CGACTAATTG GCAAAAAAAA 002560
002561 AAAAAAAA
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Predicted Small Protein

Name NONHSAT004576_smProtein_1520:1747
Length 76
Molecular weight 8830.4991
Aromaticity 0.226666666667
Instability index 55.2108
Isoelectric point 4.92144775391
Runs 11
Runs residual 0.0022695035461
Runs probability 0.0721844839493
Amino acid sequence MPALFSDSVLLSLIFMLKFSPIWFLGVSSSWLLCSLEMPHCFFPSYFFYELILHFFLLPT
PSLELALFSKEPWFL
Secondary structure LLLLLLHHHHHHHHHHHHLLLEEEEELLHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLL
LLHHHHHHLLLLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH
LLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooTTTTTTTTTTTTTTTTTTT
iiiiiiiiiiiiiii