Difference between revisions of "NONHSAT004576"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCTTGTGGGAGGCGTATTGTCCAAGATGATGCGTATTGTCCAAACGACTCAGAAGAAGTCATTTCTGAAGGGTTGATCATAACTTCCCTAGCCATGTTTTACCTACAGAGAACTTAGTTAGAATTTATGAGTACAGTATGTTAAATTACTTTTAGTGTACCTTAGGCAGTGTATTTGTTCTGATACAGAGACAAAGACTATATGATCCCTGAGACTTGTTGCCTAGTGAACTCACAAGCAGATAGAATTGTACCTCAGTTATTTGGGTGATTTAAAGATGGTACTATGGCTACACTATTCACAGCTATCGTTGTGTTACAGTATTTATACAACTGGAAACATCTCTCTAAATGACAACCATTGTATATTGTTAAATAACTTATAGTCAGTGGAATTCTGTGGGTTTTTCTTTCCTACAGGCAGGAAATTATGGTGATGTGTTGATATGATTATATATGTAGACTATTCAGTTAACATCTAGGAGTTAGCAAATTTGCTACATTCACAATCAGTATGTAAGTCAGTTGTATTCCTAGATATCAGCAACTAACAGAAATGGAAGTTTTTAGAAAGATCTCTTCAATATCATTAAAAAATACAAAATACTCTACCTAAGAATAAGTCTAACAAAAGATGTACAAGATCTTGATGGAGAAAATGTTAGACCATGTCAGGAAGCATTTAAGGAGATCTTAAATAAATGTAGTACTCCATAATGTACACGAATTAGAAGACTCAGTCGTGTAAAGATGTTCATTTACATTTGTAGATTCAATGTAATCCCAACCAAAATATTTTTTGCATTATTACCTCTATCTACTGTGTGTTTCCTTAAGACAAGGGCATTCCTACGTAACCATAGTACAACCATCAAACTTAGGAGATTGACATTGACATCATGATATCTAATCCATAGACCACATTCAATCTGCTGATTTTGATTGCCTCAGTAATGTTCCTGTGTTTCAGCATCCCAATCCAGGACCACATAGTGCATTTAGTTGCCCTATCTCTTGTTTCATTCAGTCCAGAACATCTTTTCAGACTTGTCTTTGACCTTGACACTTGAGGAGGATAGGCCAGTTTGTAGAAAGTTCCTCAGTTTTGGTTTATCATTAGATAAGACCCATAAGGTTTAGGATAGACATTTTTGTCCAATACTACAGAAATGATGCTCTATACTCAAATGTGTCATGCCAGGATGCACACAATGTCAATTTGTCTTATACCTGATAGTATTAATTTTGGTCACTTGGTTCAGATAGTATATACCAGGTTTCTCAATTGTAAAATTAGAATTAGGAAGTAATTTGTGAGGAGATTCTTAAAGATTGTAAATGTATTGTTTCTCATCGAATTGTCACGGGCTAGTCTATTGACAATTCTTGACTGAACCAATTACTATTTTGGTTGTCAAATGGTGAGTCCGTGGCTTCTGCCTTGGTTGGCATCCTACTACTGTAAGGAAGAGCTCTTCCTTCTCTATTCCTTCATTCACTTAAATCAGTATAGATTCATGAATGCCTGCTTTATTCAGTGACAGTGTATTATTGTCACTTATTTTCATGCTGAAATTTTCCCCGATTTGGTTTTTGGGAGTCTCTTCAAGCTGGCTTCTGTGTTCCTTAGAGATGCCTCATTGCTTTTTCCCCTCTTATTTTTTTTACGAGCTCATCTTACACTTTTTCCTACTCCCTACCCCAAGTCTAGAATTAGCCCTTTTTTCCAAGGAGCCCTGGTTTCTTTAAATGGGAAATGGTATATGGAAATGAAGACCTGAGAAAGGCTCGCTGTCTTATTGGTGAACAGCTCAAAGGAAAACGTGTGTCTACACACATTCAAGAATAGTCACCTACTTCTATATCTATTTATATACATACGTATTGAAAACTTTGAGTTCACATTGACACCTTCAATTCAATCCTTTGAGGTTAATCTAGTCTCCCTTTCCATCTTTGTAACTTCCTTCTCTCATAGAAACCTGACTTCCATAATCCTAAATAATTTGGTTCATTCTTCCTCCCTCCCTCAACCGCTTGACATGCCAGCTTCTTTCTCATCACACCCAGTCCCAAATATGCCAAATAAATCCGCAGTCATAGCAGCGCTGGTCCTGACCACACCAATCCCTAACATCCTCCCCAGCCTGGAGCCTGGACCATGGCAGCTGAATCTTTGACCCCAGTGATGTCAGTCCTGAGCACACCATTGGAATCCTAGGCTCCTGTCATCTGGCTGGAAGAGAGACAAATTCACAACCTTTTGATAATGAGCAATTATTGAATACTCACTGAATTTATCAGAGAAAGTTTAAAAGTGTACGATTATACATATTTACCAGGAATGTTTAAACATAGACATTTATGAAATTTATAGAAAATATTGAATTGTGGTTCTCACTTTTTGGTCTTGGCTGTAACAATTTTTAAATATTAATACTTCCTACAATAACTGTATCATGCTATTTTTAAGTGTCCTCACACTCAACCAATCTACTCTGCATCCATAAAATAAGCATGCAGTTCAGAAAATAGATTAAACGACTAATTGGCAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CCTTGTGGGAGGCGTATTGTCCAAGATGATGCGTATTGTCCAAACGACTCAGAAGAAGTCATTTCTGAAGGGTTGATCATAACTTCCCTAGCCATGTTTTACCTACAGAGAACTTAGTTAGAATTTATGAGTACAGTATGTTAAATTACTTTTAGTGTACCTTAGGCAGTGTATTTGTTCTGATACAGAGACAAAGACTATATGATCCCTGAGACTTGTTGCCTAGTGAACTCACAAGCAGATAGAATTGTACCTCAGTTATTTGGGTGATTTAAAGATGGTACTATGGCTACACTATTCACAGCTATCGTTGTGTTACAGTATTTATACAACTGGAAACATCTCTCTAAATGACAACCATTGTATATTGTTAAATAACTTATAGTCAGTGGAATTCTGTGGGTTTTTCTTTCCTACAGGCAGGAAATTATGGTGATGTGTTGATATGATTATATATGTAGACTATTCAGTTAACATCTAGGAGTTAGCAAATTTGCTACATTCACAATCAGTATGTAAGTCAGTTGTATTCCTAGATATCAGCAACTAACAGAAATGGAAGTTTTTAGAAAGATCTCTTCAATATCATTAAAAAATACAAAATACTCTACCTAAGAATAAGTCTAACAAAAGATGTACAAGATCTTGATGGAGAAAATGTTAGACCATGTCAGGAAGCATTTAAGGAGATCTTAAATAAATGTAGTACTCCATAATGTACACGAATTAGAAGACTCAGTCGTGTAAAGATGTTCATTTACATTTGTAGATTCAATGTAATCCCAACCAAAATATTTTTTGCATTATTACCTCTATCTACTGTGTGTTTCCTTAAGACAAGGGCATTCCTACGTAACCATAGTACAACCATCAAACTTAGGAGATTGACATTGACATCATGATATCTAATCCATAGACCACATTCAATCTGCTGATTTTGATTGCCTCAGTAATGTTCCTGTGTTTCAGCATCCCAATCCAGGACCACATAGTGCATTTAGTTGCCCTATCTCTTGTTTCATTCAGTCCAGAACATCTTTTCAGACTTGTCTTTGACCTTGACACTTGAGGAGGATAGGCCAGTTTGTAGAAAGTTCCTCAGTTTTGGTTTATCATTAGATAAGACCCATAAGGTTTAGGATAGACATTTTTGTCCAATACTACAGAAATGATGCTCTATACTCAAATGTGTCATGCCAGGATGCACACAATGTCAATTTGTCTTATACCTGATAGTATTAATTTTGGTCACTTGGTTCAGATAGTATATACCAGGTTTCTCAATTGTAAAATTAGAATTAGGAAGTAATTTGTGAGGAGATTCTTAAAGATTGTAAATGTATTGTTTCTCATCGAATTGTCACGGGCTAGTCTATTGACAATTCTTGACTGAACCAATTACTATTTTGGTTGTCAAATGGTGAGTCCGTGGCTTCTGCCTTGGTTGGCATCCTACTACTGTAAGGAAGAGCTCTTCCTTCTCTATTCCTTCATTCACTTAAATCAGTATAGATTCATGAATGCCTGCTTTATTCAGTGACAGTGTATTATTGTCACTTATTTTCATGCTGAAATTTTCCCCGATTTGGTTTTTGGGAGTCTCTTCAAGCTGGCTTCTGTGTTCCTTAGAGATGCCTCATTGCTTTTTCCCCTCTTATTTTTTTTACGAGCTCATCTTACACTTTTTCCTACTCCCTACCCCAAGTCTAGAATTAGCCCTTTTTTCCAAGGAGCCCTGGTTTCTTTAAATGGGAAATGGTATATGGAAATGAAGACCTGAGAAAGGCTCGCTGTCTTATTGGTGAACAGCTCAAAGGAAAACGTGTGTCTACACACATTCAAGAATAGTCACCTACTTCTATATCTATTTATATACATACGTATTGAAAACTTTGAGTTCACATTGACACCTTCAATTCAATCCTTTGAGGTTAATCTAGTCTCCCTTTCCATCTTTGTAACTTCCTTCTCTCATAGAAACCTGACTTCCATAATCCTAAATAATTTGGTTCATTCTTCCTCCCTCCCTCAACCGCTTGACATGCCAGCTTCTTTCTCATCACACCCAGTCCCAAATATGCCAAATAAATCCGCAGTCATAGCAGCGCTGGTCCTGACCACACCAATCCCTAACATCCTCCCCAGCCTGGAGCCTGGACCATGGCAGCTGAATCTTTGACCCCAGTGATGTCAGTCCTGAGCACACCATTGGAATCCTAGGCTCCTGTCATCTGGCTGGAAGAGAGACAAATTCACAACCTTTTGATAATGAGCAATTATTGAATACTCACTGAATTTATCAGAGAAAGTTTAAAAGTGTACGATTATACATATTTACCAGGAATGTTTAAACATAGACATTTATGAAATTTATAGAAAATATTGAATTGTGGTTCTCACTTTTTGGTCTTGGCTGTAACAATTTTTAAATATTAATACTTCCTACAATAACTGTATCATGCTATTTTTAAGTGTCCTCACACTCAACCAATCTACTCTGCATCCATAAAATAAGCATGCAGTTCAGAAAATAGATTAAACGACTAATTGGCAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG002115]][[Category:Transcripts]] |
Latest revision as of 19:32, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004576 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2568 nt |
Genomic location |
chr1-:94634465..94637015 |
Exon number |
1 |
Exons |
94634465..94637015 |
Genome context |
|
Sequence |
000001 CCTTGTGGGA GGCGTATTGT CCAAGATGAT GCGTATTGTC CAAACGACTC AGAAGAAGTC ATTTCTGAAG GGTTGATCAT 000080
000081 AACTTCCCTA GCCATGTTTT ACCTACAGAG AACTTAGTTA GAATTTATGA GTACAGTATG TTAAATTACT TTTAGTGTAC 000160 000161 CTTAGGCAGT GTATTTGTTC TGATACAGAG ACAAAGACTA TATGATCCCT GAGACTTGTT GCCTAGTGAA CTCACAAGCA 000240 000241 GATAGAATTG TACCTCAGTT ATTTGGGTGA TTTAAAGATG GTACTATGGC TACACTATTC ACAGCTATCG TTGTGTTACA 000320 000321 GTATTTATAC AACTGGAAAC ATCTCTCTAA ATGACAACCA TTGTATATTG TTAAATAACT TATAGTCAGT GGAATTCTGT 000400 000401 GGGTTTTTCT TTCCTACAGG CAGGAAATTA TGGTGATGTG TTGATATGAT TATATATGTA GACTATTCAG TTAACATCTA 000480 000481 GGAGTTAGCA AATTTGCTAC ATTCACAATC AGTATGTAAG TCAGTTGTAT TCCTAGATAT CAGCAACTAA CAGAAATGGA 000560 000561 AGTTTTTAGA AAGATCTCTT CAATATCATT AAAAAATACA AAATACTCTA CCTAAGAATA AGTCTAACAA AAGATGTACA 000640 000641 AGATCTTGAT GGAGAAAATG TTAGACCATG TCAGGAAGCA TTTAAGGAGA TCTTAAATAA ATGTAGTACT CCATAATGTA 000720 000721 CACGAATTAG AAGACTCAGT CGTGTAAAGA TGTTCATTTA CATTTGTAGA TTCAATGTAA TCCCAACCAA AATATTTTTT 000800 000801 GCATTATTAC CTCTATCTAC TGTGTGTTTC CTTAAGACAA GGGCATTCCT ACGTAACCAT AGTACAACCA TCAAACTTAG 000880 000881 GAGATTGACA TTGACATCAT GATATCTAAT CCATAGACCA CATTCAATCT GCTGATTTTG ATTGCCTCAG TAATGTTCCT 000960 000961 GTGTTTCAGC ATCCCAATCC AGGACCACAT AGTGCATTTA GTTGCCCTAT CTCTTGTTTC ATTCAGTCCA GAACATCTTT 001040 001041 TCAGACTTGT CTTTGACCTT GACACTTGAG GAGGATAGGC CAGTTTGTAG AAAGTTCCTC AGTTTTGGTT TATCATTAGA 001120 001121 TAAGACCCAT AAGGTTTAGG ATAGACATTT TTGTCCAATA CTACAGAAAT GATGCTCTAT ACTCAAATGT GTCATGCCAG 001200 001201 GATGCACACA ATGTCAATTT GTCTTATACC TGATAGTATT AATTTTGGTC ACTTGGTTCA GATAGTATAT ACCAGGTTTC 001280 001281 TCAATTGTAA AATTAGAATT AGGAAGTAAT TTGTGAGGAG ATTCTTAAAG ATTGTAAATG TATTGTTTCT CATCGAATTG 001360 001361 TCACGGGCTA GTCTATTGAC AATTCTTGAC TGAACCAATT ACTATTTTGG TTGTCAAATG GTGAGTCCGT GGCTTCTGCC 001440 001441 TTGGTTGGCA TCCTACTACT GTAAGGAAGA GCTCTTCCTT CTCTATTCCT TCATTCACTT AAATCAGTAT AGATTCATGA 001520 001521 ATGCCTGCTT TATTCAGTGA CAGTGTATTA TTGTCACTTA TTTTCATGCT GAAATTTTCC CCGATTTGGT TTTTGGGAGT 001600 001601 CTCTTCAAGC TGGCTTCTGT GTTCCTTAGA GATGCCTCAT TGCTTTTTCC CCTCTTATTT TTTTTACGAG CTCATCTTAC 001680 001681 ACTTTTTCCT ACTCCCTACC CCAAGTCTAG AATTAGCCCT TTTTTCCAAG GAGCCCTGGT TTCTTTAAAT GGGAAATGGT 001760 001761 ATATGGAAAT GAAGACCTGA GAAAGGCTCG CTGTCTTATT GGTGAACAGC TCAAAGGAAA ACGTGTGTCT ACACACATTC 001840 001841 AAGAATAGTC ACCTACTTCT ATATCTATTT ATATACATAC GTATTGAAAA CTTTGAGTTC ACATTGACAC CTTCAATTCA 001920 001921 ATCCTTTGAG GTTAATCTAG TCTCCCTTTC CATCTTTGTA ACTTCCTTCT CTCATAGAAA CCTGACTTCC ATAATCCTAA 002000 002001 ATAATTTGGT TCATTCTTCC TCCCTCCCTC AACCGCTTGA CATGCCAGCT TCTTTCTCAT CACACCCAGT CCCAAATATG 002080 002081 CCAAATAAAT CCGCAGTCAT AGCAGCGCTG GTCCTGACCA CACCAATCCC TAACATCCTC CCCAGCCTGG AGCCTGGACC 002160 002161 ATGGCAGCTG AATCTTTGAC CCCAGTGATG TCAGTCCTGA GCACACCATT GGAATCCTAG GCTCCTGTCA TCTGGCTGGA 002240 002241 AGAGAGACAA ATTCACAACC TTTTGATAAT GAGCAATTAT TGAATACTCA CTGAATTTAT CAGAGAAAGT TTAAAAGTGT 002320 002321 ACGATTATAC ATATTTACCA GGAATGTTTA AACATAGACA TTTATGAAAT TTATAGAAAA TATTGAATTG TGGTTCTCAC 002400 002401 TTTTTGGTCT TGGCTGTAAC AATTTTTAAA TATTAATACT TCCTACAATA ACTGTATCAT GCTATTTTTA AGTGTCCTCA 002480 002481 CACTCAACCA ATCTACTCTG CATCCATAAA ATAAGCATGC AGTTCAGAAA ATAGATTAAA CGACTAATTG GCAAAAAAAA 002560 002561 AAAAAAAA |
Predicted Small Protein
Name | NONHSAT004576_smProtein_1520:1747 |
Length | 76 |
Molecular weight | 8830.4991 |
Aromaticity | 0.226666666667 |
Instability index | 55.2108 |
Isoelectric point | 4.92144775391 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0721844839493 |
Amino acid sequence | MPALFSDSVLLSLIFMLKFSPIWFLGVSSSWLLCSLEMPHCFFPSYFFYELILHFFLLPT PSLELALFSKEPWFL |
Secondary structure | LLLLLLHHHHHHHHHHHHLLLEEEEELLHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLL LLHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooTTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiii |