Difference between revisions of "NONHSAT004813"

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sequence = <dnaseq>CGGCACCGTAGGTGAGGCCGGCGGCGTGGGCCTTTTCTCTGCACGGAGCCGGCGCTTTTGCAGTTGCTTCTGCGGAAAGGTGGTAGTTAAGAATTTGTAAAGGCCAGAGAACTACCTACGATTCTCTCAGCGGGAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGGGGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTAGGCTGCTGTGGTTTACAGACTGGTTAAAACTAAACCTGGGTGACCCTGTCCTTCTGATCCTCCACACTGATAGACAGTTATATAAGTTTGGAGAGACAGTTTCTATTGTTTTTTGGACAGACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGGGAAGGAAGATCTATGAACCTCCACGGTATATGAGTGTAAACCAAGCAGCCCAGCAGCTTCTGGAGATTGTTCAAAATCAAAGAATACGAGGAGAAGAACCAGCAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAGCCGACGACCAGAAAATTGCAGCAGGCACTTTAAGGCAAATGTGCACTGTGGACTTGGGAGAACCATTGCATTCCTTGATCATCACAGGAGGCAGCATACATCCAATGGAGATGGAGATGCTAAGTCTGTTTTCCATACCAGAAAATAGCTCAGAATCTCAAAGCATCAATGGACTTTGAACATAGATATTTACC</dnaseq>|
 
sequence = <dnaseq>CGGCACCGTAGGTGAGGCCGGCGGCGTGGGCCTTTTCTCTGCACGGAGCCGGCGCTTTTGCAGTTGCTTCTGCGGAAAGGTGGTAGTTAAGAATTTGTAAAGGCCAGAGAACTACCTACGATTCTCTCAGCGGGAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGGGGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTAGGCTGCTGTGGTTTACAGACTGGTTAAAACTAAACCTGGGTGACCCTGTCCTTCTGATCCTCCACACTGATAGACAGTTATATAAGTTTGGAGAGACAGTTTCTATTGTTTTTTGGACAGACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGGGAAGGAAGATCTATGAACCTCCACGGTATATGAGTGTAAACCAAGCAGCCCAGCAGCTTCTGGAGATTGTTCAAAATCAAAGAATACGAGGAGAAGAACCAGCAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAGCCGACGACCAGAAAATTGCAGCAGGCACTTTAAGGCAAATGTGCACTGTGGACTTGGGAGAACCATTGCATTCCTTGATCATCACAGGAGGCAGCATACATCCAATGGAGATGGAGATGCTAAGTCTGTTTTCCATACCAGAAAATAGCTCAGAATCTCAAAGCATCAATGGACTTTGAACATAGATATTTACC</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG002226]]
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[[Category:Sense]][[Category:NONHSAG002226]][[Category:Transcripts]]

Latest revision as of 19:33, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004813

Source

NONCODE4.0

Same with

,

Classification

sense

Length

930 nt

Genomic location

chr1-:101455949..101491371

Exon number

8

Exons

101455949..101456187,101458193..101458296,101460666..101460705,101467023..101467143,101477147..101477205,101479266..101479374,101487197..101487321,101491239..101491371

Genome context

Sequence
000001 CGGCACCGTA GGTGAGGCCG GCGGCGTGGG CCTTTTCTCT GCACGGAGCC GGCGCTTTTG CAGTTGCTTC TGCGGAAAGG 000080
000081 TGGTAGTTAA GAATTTGTAA AGGCCAGAGA ACTACCTACG ATTCTCTCAG CGGGAAGAGT TTTATGGAAG AAAATTGGTT 000160
000161 GTTGCTGATA GAGAAGAAGT GGAACAAGAA GCAGATAATA TTTTAAAGGA TGCTGATATC AGTGATGTTG CATTCCTTGT 000240
000241 GGTTGGTGAT CCATTTGGGG CCACAACACA CAGTGATCTT GTTCTAAGAG CAACAAAGCT GGGAATTCCT TATAGAGTTA 000320
000321 TTCACAATGC CTCCATAATG AATGCTGTAG GCTGCTGTGG TTTACAGACT GGTTAAAACT AAACCTGGGT GACCCTGTCC 000400
000401 TTCTGATCCT CCACACTGAT AGACAGTTAT ATAAGTTTGG AGAGACAGTT TCTATTGTTT TTTGGACAGA CACTTGGAGA 000480
000481 CCAGAAAGCT TCTTTGACAA AGTGAAGAAG AACAGACAAA ATGGCATGCA CACATTATGT TTACTAGACA TCAAAGTAAA 000560
000561 GGAGCAGTCT TTGGAAAATC TAATCAAGGG AAGGAAGATC TATGAACCTC CACGGTATAT GAGTGTAAAC CAAGCAGCCC 000640
000641 AGCAGCTTCT GGAGATTGTT CAAAATCAAA GAATACGAGG AGAAGAACCA GCAGTTACCG AGGAGACACT TTGTGTTGGC 000720
000721 TTAGCCAGGG TTGGAGCCGA CGACCAGAAA ATTGCAGCAG GCACTTTAAG GCAAATGTGC ACTGTGGACT TGGGAGAACC 000800
000801 ATTGCATTCC TTGATCATCA CAGGAGGCAG CATACATCCA ATGGAGATGG AGATGCTAAG TCTGTTTTCC ATACCAGAAA 000880
000881 ATAGCTCAGA ATCTCAAAGC ATCAATGGAC TTTGAACATA GATATTTACC
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Predicted Small Protein

Name NONHSAT004813_smProtein_209:286
Length 26
Molecular weight 2898.5745
Aromaticity 0.08
Instability index 41.336
Isoelectric point 6.80609130859
Runs 5
Runs residual 0.00830188679245
Runs probability 0.0137078254725
Amino acid sequence MLISVMLHSLWLVIHLGPQHTVILF
Secondary structure LHHHHHHHHHHHHHHHLLLLEEEEL
PRMN HHHHHHHHHHHHHHHHHHHLLLLLL
PiMo i????????????????????????