Difference between revisions of "NONHSAT004813"
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sequence = <dnaseq>CGGCACCGTAGGTGAGGCCGGCGGCGTGGGCCTTTTCTCTGCACGGAGCCGGCGCTTTTGCAGTTGCTTCTGCGGAAAGGTGGTAGTTAAGAATTTGTAAAGGCCAGAGAACTACCTACGATTCTCTCAGCGGGAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGGGGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTAGGCTGCTGTGGTTTACAGACTGGTTAAAACTAAACCTGGGTGACCCTGTCCTTCTGATCCTCCACACTGATAGACAGTTATATAAGTTTGGAGAGACAGTTTCTATTGTTTTTTGGACAGACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGGGAAGGAAGATCTATGAACCTCCACGGTATATGAGTGTAAACCAAGCAGCCCAGCAGCTTCTGGAGATTGTTCAAAATCAAAGAATACGAGGAGAAGAACCAGCAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAGCCGACGACCAGAAAATTGCAGCAGGCACTTTAAGGCAAATGTGCACTGTGGACTTGGGAGAACCATTGCATTCCTTGATCATCACAGGAGGCAGCATACATCCAATGGAGATGGAGATGCTAAGTCTGTTTTCCATACCAGAAAATAGCTCAGAATCTCAAAGCATCAATGGACTTTGAACATAGATATTTACC</dnaseq>| | sequence = <dnaseq>CGGCACCGTAGGTGAGGCCGGCGGCGTGGGCCTTTTCTCTGCACGGAGCCGGCGCTTTTGCAGTTGCTTCTGCGGAAAGGTGGTAGTTAAGAATTTGTAAAGGCCAGAGAACTACCTACGATTCTCTCAGCGGGAAGAGTTTTATGGAAGAAAATTGGTTGTTGCTGATAGAGAAGAAGTGGAACAAGAAGCAGATAATATTTTAAAGGATGCTGATATCAGTGATGTTGCATTCCTTGTGGTTGGTGATCCATTTGGGGCCACAACACACAGTGATCTTGTTCTAAGAGCAACAAAGCTGGGAATTCCTTATAGAGTTATTCACAATGCCTCCATAATGAATGCTGTAGGCTGCTGTGGTTTACAGACTGGTTAAAACTAAACCTGGGTGACCCTGTCCTTCTGATCCTCCACACTGATAGACAGTTATATAAGTTTGGAGAGACAGTTTCTATTGTTTTTTGGACAGACACTTGGAGACCAGAAAGCTTCTTTGACAAAGTGAAGAAGAACAGACAAAATGGCATGCACACATTATGTTTACTAGACATCAAAGTAAAGGAGCAGTCTTTGGAAAATCTAATCAAGGGAAGGAAGATCTATGAACCTCCACGGTATATGAGTGTAAACCAAGCAGCCCAGCAGCTTCTGGAGATTGTTCAAAATCAAAGAATACGAGGAGAAGAACCAGCAGTTACCGAGGAGACACTTTGTGTTGGCTTAGCCAGGGTTGGAGCCGACGACCAGAAAATTGCAGCAGGCACTTTAAGGCAAATGTGCACTGTGGACTTGGGAGAACCATTGCATTCCTTGATCATCACAGGAGGCAGCATACATCCAATGGAGATGGAGATGCTAAGTCTGTTTTCCATACCAGAAAATAGCTCAGAATCTCAAAGCATCAATGGACTTTGAACATAGATATTTACC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG002226]] | + | [[Category:Sense]][[Category:NONHSAG002226]][[Category:Transcripts]] |
Latest revision as of 19:33, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004813 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
930 nt |
Genomic location |
chr1-:101455949..101491371 |
Exon number |
8 |
Exons |
101455949..101456187,101458193..101458296,101460666..101460705,101467023..101467143,101477147..101477205,101479266..101479374,101487197..101487321,101491239..101491371 |
Genome context |
|
Sequence |
000001 CGGCACCGTA GGTGAGGCCG GCGGCGTGGG CCTTTTCTCT GCACGGAGCC GGCGCTTTTG CAGTTGCTTC TGCGGAAAGG 000080
000081 TGGTAGTTAA GAATTTGTAA AGGCCAGAGA ACTACCTACG ATTCTCTCAG CGGGAAGAGT TTTATGGAAG AAAATTGGTT 000160 000161 GTTGCTGATA GAGAAGAAGT GGAACAAGAA GCAGATAATA TTTTAAAGGA TGCTGATATC AGTGATGTTG CATTCCTTGT 000240 000241 GGTTGGTGAT CCATTTGGGG CCACAACACA CAGTGATCTT GTTCTAAGAG CAACAAAGCT GGGAATTCCT TATAGAGTTA 000320 000321 TTCACAATGC CTCCATAATG AATGCTGTAG GCTGCTGTGG TTTACAGACT GGTTAAAACT AAACCTGGGT GACCCTGTCC 000400 000401 TTCTGATCCT CCACACTGAT AGACAGTTAT ATAAGTTTGG AGAGACAGTT TCTATTGTTT TTTGGACAGA CACTTGGAGA 000480 000481 CCAGAAAGCT TCTTTGACAA AGTGAAGAAG AACAGACAAA ATGGCATGCA CACATTATGT TTACTAGACA TCAAAGTAAA 000560 000561 GGAGCAGTCT TTGGAAAATC TAATCAAGGG AAGGAAGATC TATGAACCTC CACGGTATAT GAGTGTAAAC CAAGCAGCCC 000640 000641 AGCAGCTTCT GGAGATTGTT CAAAATCAAA GAATACGAGG AGAAGAACCA GCAGTTACCG AGGAGACACT TTGTGTTGGC 000720 000721 TTAGCCAGGG TTGGAGCCGA CGACCAGAAA ATTGCAGCAG GCACTTTAAG GCAAATGTGC ACTGTGGACT TGGGAGAACC 000800 000801 ATTGCATTCC TTGATCATCA CAGGAGGCAG CATACATCCA ATGGAGATGG AGATGCTAAG TCTGTTTTCC ATACCAGAAA 000880 000881 ATAGCTCAGA ATCTCAAAGC ATCAATGGAC TTTGAACATA GATATTTACC |
Predicted Small Protein
Name | NONHSAT004813_smProtein_209:286 |
Length | 26 |
Molecular weight | 2898.5745 |
Aromaticity | 0.08 |
Instability index | 41.336 |
Isoelectric point | 6.80609130859 |
Runs | 5 |
Runs residual | 0.00830188679245 |
Runs probability | 0.0137078254725 |
Amino acid sequence | MLISVMLHSLWLVIHLGPQHTVILF |
Secondary structure | LHHHHHHHHHHHHHHHLLLLEEEEL |
PRMN | HHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | i???????????????????????? |