Difference between revisions of "NONHSAT005518"
Line 42: | Line 42: | ||
sequence = <dnaseq>ataataataaaaaaaAGAAAACAGCAAGTAGAAAAGGAAGGCACAGAAAAAATGAAAGCATAATAATTCACTGAGGAATCAGCAACCTCAGAAATTCTATTTGTTAATTTTTCTATAAGGGGCCCAGGAGAGGAAACTATAATAAAATAATATTGTGGCCTTCATCCTCATGAGTCCTCACCTCCTCCTTCAGTGCAGGAACTTTCTTCTGGAATATTGCTGAGGATCAACACCTTTCCTGCTCACTGGCCGTCCGGTTCATGGTGGGAACACTTCTCTCCCCAGGGCTGGTTCCCACACTCATGTCTGAATAAGCCACGCAGTCTCTCATTAAAACAAAAAAAAGTCGTTACAGAAGCCTCTTTTTGGGGGAGGCTACTGCAAACTCAGGGAACTCGCTGAACAACCTATTTATTGGAACTGACAATTGTTCGCAATGGGTTTCCCTACAGGACAGGCTGGTGTGGGGAGATCTGGTGGTAAAGGCCAAGCACGTAGCACTTCTTCAGCACTGCATTTACAGATAGGAAATGGGACATGGCTTTCTTCCCAGGAAGAGCCTGTATGTTTATATTACTCCCACAAAGGGAAATCTGTAAAACCAGACCATTTTGTCCTAGAGTCATATAAAGTCATATCATTTGATTTTCAGAAACACTTAGAAGAAAAGGACGACTGTAGGCCTGCTTTACTATGTGCATAGGTGGGTAGAAGTGAGGAGGGCATATTATAAAATGAATTTGCATTCCATTGAGCCAACATGGTTATATCaaatattaaatattttatttattCAAGGACTACTAAGTGATTGTGACATCTAGAGGCCACATTCCCAGTAATTAAGAGCAAATGCCAtagctaatgcacaggagagggacaagactcagaagactttggttataattcctattcgacctctcactggctttccatgtccatctctacatagacaaggagcctgagggtagagactgtgtctcatttctaattcttcgtacttggattgtacctgcaaaacaggcactccacaaatgcttgttcactgagtATAttaggtgaatccacatggaactgccagtgtttttggtaaaaaatagtaatcaaatattacaatttcatgtgactcaacataaTATTTCCATCTAATTTTGTCCACATATTGTATGAATTTGCCTTTCCCTAAATGTGCTCATGTTTCTGTGCCCTACTTTTTAATTGAAAAGCCCTTTCTCCTGTCCTATATCGATCATATTCCTTCCTTGAACATTCTTGTGAATTACTCATTCCCAGGCACACCCAGCATTTGCTAGCTGGTATCTCTGTGTGTCCTCCTCTAAATTGTAGTCATATTGCATTTCCTCAGTGCCTACACAAACATTTGTCATAATGTTGAATTACCTATCTAAGGATAaagtcactatagctctgaaacccagtttccttcctagagaaagaagataatccctgcctggccaatataacagaactgttgagagttaacatatgagGACTTAAAATGATTAACAGTAAAGCCTCCAGGTTGTTCTTCTTAAAGGGGGTGGTTTGAAAATGTTAAGTGCTATTAATAGGCAATTTGTTTTCAGCTCAATCTCAGGGAGGGATTGACTTCCTAGCCAAAACATTTCAAAAGATGCATCCAGTTGACAGACTGAAAAGAGAATGTCGATCACATAGGGAGGACACACAAAGAGAACACAGACAGAGTCCTTGTGTTGAAGAGAAAGAGACCAAGAATTGTCACATGCACAATTATTCCCTTTAACTAGTAACAGGGGCACACAGCACTTGATAGGGTGAACTGAAAGAAATCAAAGGCTGCATGTGAGAGCAAACTAAGGACTGCTCTGTGTACAAATGAAGAACTTTTGGGGGAATAATTATAACAGCATTAAAGTAAGGAGAGGGGAGGGGAAAAGGAGGCAAGGAGGGAGAAGTGAGGGCTAAGAATATCATAGGACACACAAGAGAGTATCACAAGTACTTGGAGAAGATTCTAGACTCAATGAAGAGTGGCAGACTACTCCCTTAGGCACAATAGTTAAGGGATATTTCTTAGTTCTTAATTGGGAGAAGCTAGAGACTCAtaataaatatgtgacttttggcaagttgctgaatgttactttaaaaactggtattaatagttcctatcttatagagctgatataaacatgaaataagacattgaacataaacacacttacaaagtgctcagcatatggcaagtatataatacatattgTAATAGCTCTTATTATTTAACATTGTTTGGCAAACTATATGGTCATTCTCAAGTAATGTTTTTACTATATTCAAGAATTGTCCAGTTGAAGAACTCTCCAGGAAGAGTCTTGAACTTTACGTATTTGATCTATTATAAGCAAAACCAGTAAACTGAATACTGAAGAAGCAGTATCTATAGATGGTTCTatgacagaaatgttctccacctatatttatccactatgacaggcattaaccacatgaagccacagggcacttgaatgtgctgctaagaaagcaatttttaaaatttaattatttcaatttaaatGGACACATACCATATTGGACAGTGTTGCCCCCCATACGTACCAAAAGACCTTATACAGGTCACTGTGGCCTAGTGgggctctggattaggtgacctggatttgaaaccagaatcttccctttagaagctgaactacattaagcaagtaactcagcctcccatgcctcagtttcaacttttgcaatctgaggttgataacagtatctactttattggcttgtaaattaaattagagaatgcaaataaagcaatggttctcaaagttcagcatgccatcagtatcacctggaaggcgaagacaccaattgctgggttcatcctctaggttttttactcaacaggtctgagggagtcagataatttgcattcctaatgagttcccaggtgatgctcatgttgccggtctggggaccacacttggaaaaacactgttataagccattcagtatggtgcctgatacacaatgagaactcaataGTGTTATTATGATAAGCATCTTGATGGTGTACATCAGTAGGGCTTTTGCAAAAAAAAATTCACACTTTATTAGAAATCTCTAGCCCATTTTTTGACACATACTTTTGATAAATGTTTATGGGTCACCTACAAAGGGCAAGACACCCCCACTGTGTTGAGTGACCAGCTGTCAAAGTCGGTTTGAAGCAGGGTTTCAGAGCACCAGTTACAGGACCATTATTATTACCACCTGAAATATTTTTCACCATTTCAACTTCCCACAAAACATACAGAAAAAAAAAAATTAGGTTTCTCTCCAATGTGTCATCTCCATTAGAAAGATTGTGAAGGGCCTATAAACAATAAGTGGAAGGGATGTGAAAATAGATCTAGATTCCATACTTGTTGGCTCTTTTATCAACTTCCTGAGATCACTGGGTGTGATGGAttttttttttttttttttgagacggagtctcgctctgttgcccaggctggggtgtagtggtttgatctcggctcactgcaagctccacctcctgg</dnaseq>| | sequence = <dnaseq>ataataataaaaaaaAGAAAACAGCAAGTAGAAAAGGAAGGCACAGAAAAAATGAAAGCATAATAATTCACTGAGGAATCAGCAACCTCAGAAATTCTATTTGTTAATTTTTCTATAAGGGGCCCAGGAGAGGAAACTATAATAAAATAATATTGTGGCCTTCATCCTCATGAGTCCTCACCTCCTCCTTCAGTGCAGGAACTTTCTTCTGGAATATTGCTGAGGATCAACACCTTTCCTGCTCACTGGCCGTCCGGTTCATGGTGGGAACACTTCTCTCCCCAGGGCTGGTTCCCACACTCATGTCTGAATAAGCCACGCAGTCTCTCATTAAAACAAAAAAAAGTCGTTACAGAAGCCTCTTTTTGGGGGAGGCTACTGCAAACTCAGGGAACTCGCTGAACAACCTATTTATTGGAACTGACAATTGTTCGCAATGGGTTTCCCTACAGGACAGGCTGGTGTGGGGAGATCTGGTGGTAAAGGCCAAGCACGTAGCACTTCTTCAGCACTGCATTTACAGATAGGAAATGGGACATGGCTTTCTTCCCAGGAAGAGCCTGTATGTTTATATTACTCCCACAAAGGGAAATCTGTAAAACCAGACCATTTTGTCCTAGAGTCATATAAAGTCATATCATTTGATTTTCAGAAACACTTAGAAGAAAAGGACGACTGTAGGCCTGCTTTACTATGTGCATAGGTGGGTAGAAGTGAGGAGGGCATATTATAAAATGAATTTGCATTCCATTGAGCCAACATGGTTATATCaaatattaaatattttatttattCAAGGACTACTAAGTGATTGTGACATCTAGAGGCCACATTCCCAGTAATTAAGAGCAAATGCCAtagctaatgcacaggagagggacaagactcagaagactttggttataattcctattcgacctctcactggctttccatgtccatctctacatagacaaggagcctgagggtagagactgtgtctcatttctaattcttcgtacttggattgtacctgcaaaacaggcactccacaaatgcttgttcactgagtATAttaggtgaatccacatggaactgccagtgtttttggtaaaaaatagtaatcaaatattacaatttcatgtgactcaacataaTATTTCCATCTAATTTTGTCCACATATTGTATGAATTTGCCTTTCCCTAAATGTGCTCATGTTTCTGTGCCCTACTTTTTAATTGAAAAGCCCTTTCTCCTGTCCTATATCGATCATATTCCTTCCTTGAACATTCTTGTGAATTACTCATTCCCAGGCACACCCAGCATTTGCTAGCTGGTATCTCTGTGTGTCCTCCTCTAAATTGTAGTCATATTGCATTTCCTCAGTGCCTACACAAACATTTGTCATAATGTTGAATTACCTATCTAAGGATAaagtcactatagctctgaaacccagtttccttcctagagaaagaagataatccctgcctggccaatataacagaactgttgagagttaacatatgagGACTTAAAATGATTAACAGTAAAGCCTCCAGGTTGTTCTTCTTAAAGGGGGTGGTTTGAAAATGTTAAGTGCTATTAATAGGCAATTTGTTTTCAGCTCAATCTCAGGGAGGGATTGACTTCCTAGCCAAAACATTTCAAAAGATGCATCCAGTTGACAGACTGAAAAGAGAATGTCGATCACATAGGGAGGACACACAAAGAGAACACAGACAGAGTCCTTGTGTTGAAGAGAAAGAGACCAAGAATTGTCACATGCACAATTATTCCCTTTAACTAGTAACAGGGGCACACAGCACTTGATAGGGTGAACTGAAAGAAATCAAAGGCTGCATGTGAGAGCAAACTAAGGACTGCTCTGTGTACAAATGAAGAACTTTTGGGGGAATAATTATAACAGCATTAAAGTAAGGAGAGGGGAGGGGAAAAGGAGGCAAGGAGGGAGAAGTGAGGGCTAAGAATATCATAGGACACACAAGAGAGTATCACAAGTACTTGGAGAAGATTCTAGACTCAATGAAGAGTGGCAGACTACTCCCTTAGGCACAATAGTTAAGGGATATTTCTTAGTTCTTAATTGGGAGAAGCTAGAGACTCAtaataaatatgtgacttttggcaagttgctgaatgttactttaaaaactggtattaatagttcctatcttatagagctgatataaacatgaaataagacattgaacataaacacacttacaaagtgctcagcatatggcaagtatataatacatattgTAATAGCTCTTATTATTTAACATTGTTTGGCAAACTATATGGTCATTCTCAAGTAATGTTTTTACTATATTCAAGAATTGTCCAGTTGAAGAACTCTCCAGGAAGAGTCTTGAACTTTACGTATTTGATCTATTATAAGCAAAACCAGTAAACTGAATACTGAAGAAGCAGTATCTATAGATGGTTCTatgacagaaatgttctccacctatatttatccactatgacaggcattaaccacatgaagccacagggcacttgaatgtgctgctaagaaagcaatttttaaaatttaattatttcaatttaaatGGACACATACCATATTGGACAGTGTTGCCCCCCATACGTACCAAAAGACCTTATACAGGTCACTGTGGCCTAGTGgggctctggattaggtgacctggatttgaaaccagaatcttccctttagaagctgaactacattaagcaagtaactcagcctcccatgcctcagtttcaacttttgcaatctgaggttgataacagtatctactttattggcttgtaaattaaattagagaatgcaaataaagcaatggttctcaaagttcagcatgccatcagtatcacctggaaggcgaagacaccaattgctgggttcatcctctaggttttttactcaacaggtctgagggagtcagataatttgcattcctaatgagttcccaggtgatgctcatgttgccggtctggggaccacacttggaaaaacactgttataagccattcagtatggtgcctgatacacaatgagaactcaataGTGTTATTATGATAAGCATCTTGATGGTGTACATCAGTAGGGCTTTTGCAAAAAAAAATTCACACTTTATTAGAAATCTCTAGCCCATTTTTTGACACATACTTTTGATAAATGTTTATGGGTCACCTACAAAGGGCAAGACACCCCCACTGTGTTGAGTGACCAGCTGTCAAAGTCGGTTTGAAGCAGGGTTTCAGAGCACCAGTTACAGGACCATTATTATTACCACCTGAAATATTTTTCACCATTTCAACTTCCCACAAAACATACAGAAAAAAAAAAATTAGGTTTCTCTCCAATGTGTCATCTCCATTAGAAAGATTGTGAAGGGCCTATAAACAATAAGTGGAAGGGATGTGAAAATAGATCTAGATTCCATACTTGTTGGCTCTTTTATCAACTTCCTGAGATCACTGGGTGTGATGGAttttttttttttttttttgagacggagtctcgctctgttgcccaggctggggtgtagtggtttgatctcggctcactgcaagctccacctcctgg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG002572]] | + | [[Category:Intergenic]][[Category:NONHSAG002572]][[Category:Transcripts]] |
Latest revision as of 19:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005518 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3578 nt |
Genomic location |
chr1+:119569257..119572834 |
Exon number |
1 |
Exons |
119569257..119572834 |
Genome context |
|
Sequence |
000001 ataataataa aaaaaAGAAA ACAGCAAGTA GAAAAGGAAG GCACAGAAAA AATGAAAGCA TAATAATTCA CTGAGGAATC 000080
000081 AGCAACCTCA GAAATTCTAT TTGTTAATTT TTCTATAAGG GGCCCAGGAG AGGAAACTAT AATAAAATAA TATTGTGGCC 000160 000161 TTCATCCTCA TGAGTCCTCA CCTCCTCCTT CAGTGCAGGA ACTTTCTTCT GGAATATTGC TGAGGATCAA CACCTTTCCT 000240 000241 GCTCACTGGC CGTCCGGTTC ATGGTGGGAA CACTTCTCTC CCCAGGGCTG GTTCCCACAC TCATGTCTGA ATAAGCCACG 000320 000321 CAGTCTCTCA TTAAAACAAA AAAAAGTCGT TACAGAAGCC TCTTTTTGGG GGAGGCTACT GCAAACTCAG GGAACTCGCT 000400 000401 GAACAACCTA TTTATTGGAA CTGACAATTG TTCGCAATGG GTTTCCCTAC AGGACAGGCT GGTGTGGGGA GATCTGGTGG 000480 000481 TAAAGGCCAA GCACGTAGCA CTTCTTCAGC ACTGCATTTA CAGATAGGAA ATGGGACATG GCTTTCTTCC CAGGAAGAGC 000560 000561 CTGTATGTTT ATATTACTCC CACAAAGGGA AATCTGTAAA ACCAGACCAT TTTGTCCTAG AGTCATATAA AGTCATATCA 000640 000641 TTTGATTTTC AGAAACACTT AGAAGAAAAG GACGACTGTA GGCCTGCTTT ACTATGTGCA TAGGTGGGTA GAAGTGAGGA 000720 000721 GGGCATATTA TAAAATGAAT TTGCATTCCA TTGAGCCAAC ATGGTTATAT Caaatattaa atattttatt tattCAAGGA 000800 000801 CTACTAAGTG ATTGTGACAT CTAGAGGCCA CATTCCCAGT AATTAAGAGC AAATGCCAta gctaatgcac aggagaggga 000880 000881 caagactcag aagactttgg ttataattcc tattcgacct ctcactggct ttccatgtcc atctctacat agacaaggag 000960 000961 cctgagggta gagactgtgt ctcatttcta attcttcgta cttggattgt acctgcaaaa caggcactcc acaaatgctt 001040 001041 gttcactgag tATAttaggt gaatccacat ggaactgcca gtgtttttgg taaaaaatag taatcaaata ttacaatttc 001120 001121 atgtgactca acataaTATT TCCATCTAAT TTTGTCCACA TATTGTATGA ATTTGCCTTT CCCTAAATGT GCTCATGTTT 001200 001201 CTGTGCCCTA CTTTTTAATT GAAAAGCCCT TTCTCCTGTC CTATATCGAT CATATTCCTT CCTTGAACAT TCTTGTGAAT 001280 001281 TACTCATTCC CAGGCACACC CAGCATTTGC TAGCTGGTAT CTCTGTGTGT CCTCCTCTAA ATTGTAGTCA TATTGCATTT 001360 001361 CCTCAGTGCC TACACAAACA TTTGTCATAA TGTTGAATTA CCTATCTAAG GATAaagtca ctatagctct gaaacccagt 001440 001441 ttccttccta gagaaagaag ataatccctg cctggccaat ataacagaac tgttgagagt taacatatga gGACTTAAAA 001520 001521 TGATTAACAG TAAAGCCTCC AGGTTGTTCT TCTTAAAGGG GGTGGTTTGA AAATGTTAAG TGCTATTAAT AGGCAATTTG 001600 001601 TTTTCAGCTC AATCTCAGGG AGGGATTGAC TTCCTAGCCA AAACATTTCA AAAGATGCAT CCAGTTGACA GACTGAAAAG 001680 001681 AGAATGTCGA TCACATAGGG AGGACACACA AAGAGAACAC AGACAGAGTC CTTGTGTTGA AGAGAAAGAG ACCAAGAATT 001760 001761 GTCACATGCA CAATTATTCC CTTTAACTAG TAACAGGGGC ACACAGCACT TGATAGGGTG AACTGAAAGA AATCAAAGGC 001840 001841 TGCATGTGAG AGCAAACTAA GGACTGCTCT GTGTACAAAT GAAGAACTTT TGGGGGAATA ATTATAACAG CATTAAAGTA 001920 001921 AGGAGAGGGG AGGGGAAAAG GAGGCAAGGA GGGAGAAGTG AGGGCTAAGA ATATCATAGG ACACACAAGA GAGTATCACA 002000 002001 AGTACTTGGA GAAGATTCTA GACTCAATGA AGAGTGGCAG ACTACTCCCT TAGGCACAAT AGTTAAGGGA TATTTCTTAG 002080 002081 TTCTTAATTG GGAGAAGCTA GAGACTCAta ataaatatgt gacttttggc aagttgctga atgttacttt aaaaactggt 002160 002161 attaatagtt cctatcttat agagctgata taaacatgaa ataagacatt gaacataaac acacttacaa agtgctcagc 002240 002241 atatggcaag tatataatac atattgTAAT AGCTCTTATT ATTTAACATT GTTTGGCAAA CTATATGGTC ATTCTCAAGT 002320 002321 AATGTTTTTA CTATATTCAA GAATTGTCCA GTTGAAGAAC TCTCCAGGAA GAGTCTTGAA CTTTACGTAT TTGATCTATT 002400 002401 ATAAGCAAAA CCAGTAAACT GAATACTGAA GAAGCAGTAT CTATAGATGG TTCTatgaca gaaatgttct ccacctatat 002480 002481 ttatccacta tgacaggcat taaccacatg aagccacagg gcacttgaat gtgctgctaa gaaagcaatt tttaaaattt 002560 002561 aattatttca atttaaatGG ACACATACCA TATTGGACAG TGTTGCCCCC CATACGTACC AAAAGACCTT ATACAGGTCA 002640 002641 CTGTGGCCTA GTGgggctct ggattaggtg acctggattt gaaaccagaa tcttcccttt agaagctgaa ctacattaag 002720 002721 caagtaactc agcctcccat gcctcagttt caacttttgc aatctgaggt tgataacagt atctacttta ttggcttgta 002800 002801 aattaaatta gagaatgcaa ataaagcaat ggttctcaaa gttcagcatg ccatcagtat cacctggaag gcgaagacac 002880 002881 caattgctgg gttcatcctc taggtttttt actcaacagg tctgagggag tcagataatt tgcattccta atgagttccc 002960 002961 aggtgatgct catgttgccg gtctggggac cacacttgga aaaacactgt tataagccat tcagtatggt gcctgataca 003040 003041 caatgagaac tcaataGTGT TATTATGATA AGCATCTTGA TGGTGTACAT CAGTAGGGCT TTTGCAAAAA AAAATTCACA 003120 003121 CTTTATTAGA AATCTCTAGC CCATTTTTTG ACACATACTT TTGATAAATG TTTATGGGTC ACCTACAAAG GGCAAGACAC 003200 003201 CCCCACTGTG TTGAGTGACC AGCTGTCAAA GTCGGTTTGA AGCAGGGTTT CAGAGCACCA GTTACAGGAC CATTATTATT 003280 003281 ACCACCTGAA ATATTTTTCA CCATTTCAAC TTCCCACAAA ACATACAGAA AAAAAAAAAT TAGGTTTCTC TCCAATGTGT 003360 003361 CATCTCCATT AGAAAGATTG TGAAGGGCCT ATAAACAATA AGTGGAAGGG ATGTGAAAAT AGATCTAGAT TCCATACTTG 003440 003441 TTGGCTCTTT TATCAACTTC CTGAGATCAC TGGGTGTGAT GGAttttttt tttttttttt tgagacggag tctcgctctg 003520 003521 ttgcccaggc tggggtgtag tggtttgatc tcggctcact gcaagctcca cctcctgg |
Predicted Small Protein
Name | NONHSAT005518_smProtein_1166:1312 |
Length | 49 |
Molecular weight | 5437.3969 |
Aromaticity | 0.145833333333 |
Instability index | 67.6583333333 |
Isoelectric point | 6.68499755859 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0628275334158 |
Amino acid sequence | MNLPFPKCAHVSVPYFLIEKPFLLSYIDHIPSLNILVNYSFPGTPSIC |
Secondary structure | LLLLLLLEEEEELLLEEEELLHHHHHLLLLLLLLEEEELLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooo |