Difference between revisions of "NONHSAT005518"

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sequence = <dnaseq>ataataataaaaaaaAGAAAACAGCAAGTAGAAAAGGAAGGCACAGAAAAAATGAAAGCATAATAATTCACTGAGGAATCAGCAACCTCAGAAATTCTATTTGTTAATTTTTCTATAAGGGGCCCAGGAGAGGAAACTATAATAAAATAATATTGTGGCCTTCATCCTCATGAGTCCTCACCTCCTCCTTCAGTGCAGGAACTTTCTTCTGGAATATTGCTGAGGATCAACACCTTTCCTGCTCACTGGCCGTCCGGTTCATGGTGGGAACACTTCTCTCCCCAGGGCTGGTTCCCACACTCATGTCTGAATAAGCCACGCAGTCTCTCATTAAAACAAAAAAAAGTCGTTACAGAAGCCTCTTTTTGGGGGAGGCTACTGCAAACTCAGGGAACTCGCTGAACAACCTATTTATTGGAACTGACAATTGTTCGCAATGGGTTTCCCTACAGGACAGGCTGGTGTGGGGAGATCTGGTGGTAAAGGCCAAGCACGTAGCACTTCTTCAGCACTGCATTTACAGATAGGAAATGGGACATGGCTTTCTTCCCAGGAAGAGCCTGTATGTTTATATTACTCCCACAAAGGGAAATCTGTAAAACCAGACCATTTTGTCCTAGAGTCATATAAAGTCATATCATTTGATTTTCAGAAACACTTAGAAGAAAAGGACGACTGTAGGCCTGCTTTACTATGTGCATAGGTGGGTAGAAGTGAGGAGGGCATATTATAAAATGAATTTGCATTCCATTGAGCCAACATGGTTATATCaaatattaaatattttatttattCAAGGACTACTAAGTGATTGTGACATCTAGAGGCCACATTCCCAGTAATTAAGAGCAAATGCCAtagctaatgcacaggagagggacaagactcagaagactttggttataattcctattcgacctctcactggctttccatgtccatctctacatagacaaggagcctgagggtagagactgtgtctcatttctaattcttcgtacttggattgtacctgcaaaacaggcactccacaaatgcttgttcactgagtATAttaggtgaatccacatggaactgccagtgtttttggtaaaaaatagtaatcaaatattacaatttcatgtgactcaacataaTATTTCCATCTAATTTTGTCCACATATTGTATGAATTTGCCTTTCCCTAAATGTGCTCATGTTTCTGTGCCCTACTTTTTAATTGAAAAGCCCTTTCTCCTGTCCTATATCGATCATATTCCTTCCTTGAACATTCTTGTGAATTACTCATTCCCAGGCACACCCAGCATTTGCTAGCTGGTATCTCTGTGTGTCCTCCTCTAAATTGTAGTCATATTGCATTTCCTCAGTGCCTACACAAACATTTGTCATAATGTTGAATTACCTATCTAAGGATAaagtcactatagctctgaaacccagtttccttcctagagaaagaagataatccctgcctggccaatataacagaactgttgagagttaacatatgagGACTTAAAATGATTAACAGTAAAGCCTCCAGGTTGTTCTTCTTAAAGGGGGTGGTTTGAAAATGTTAAGTGCTATTAATAGGCAATTTGTTTTCAGCTCAATCTCAGGGAGGGATTGACTTCCTAGCCAAAACATTTCAAAAGATGCATCCAGTTGACAGACTGAAAAGAGAATGTCGATCACATAGGGAGGACACACAAAGAGAACACAGACAGAGTCCTTGTGTTGAAGAGAAAGAGACCAAGAATTGTCACATGCACAATTATTCCCTTTAACTAGTAACAGGGGCACACAGCACTTGATAGGGTGAACTGAAAGAAATCAAAGGCTGCATGTGAGAGCAAACTAAGGACTGCTCTGTGTACAAATGAAGAACTTTTGGGGGAATAATTATAACAGCATTAAAGTAAGGAGAGGGGAGGGGAAAAGGAGGCAAGGAGGGAGAAGTGAGGGCTAAGAATATCATAGGACACACAAGAGAGTATCACAAGTACTTGGAGAAGATTCTAGACTCAATGAAGAGTGGCAGACTACTCCCTTAGGCACAATAGTTAAGGGATATTTCTTAGTTCTTAATTGGGAGAAGCTAGAGACTCAtaataaatatgtgacttttggcaagttgctgaatgttactttaaaaactggtattaatagttcctatcttatagagctgatataaacatgaaataagacattgaacataaacacacttacaaagtgctcagcatatggcaagtatataatacatattgTAATAGCTCTTATTATTTAACATTGTTTGGCAAACTATATGGTCATTCTCAAGTAATGTTTTTACTATATTCAAGAATTGTCCAGTTGAAGAACTCTCCAGGAAGAGTCTTGAACTTTACGTATTTGATCTATTATAAGCAAAACCAGTAAACTGAATACTGAAGAAGCAGTATCTATAGATGGTTCTatgacagaaatgttctccacctatatttatccactatgacaggcattaaccacatgaagccacagggcacttgaatgtgctgctaagaaagcaatttttaaaatttaattatttcaatttaaatGGACACATACCATATTGGACAGTGTTGCCCCCCATACGTACCAAAAGACCTTATACAGGTCACTGTGGCCTAGTGgggctctggattaggtgacctggatttgaaaccagaatcttccctttagaagctgaactacattaagcaagtaactcagcctcccatgcctcagtttcaacttttgcaatctgaggttgataacagtatctactttattggcttgtaaattaaattagagaatgcaaataaagcaatggttctcaaagttcagcatgccatcagtatcacctggaaggcgaagacaccaattgctgggttcatcctctaggttttttactcaacaggtctgagggagtcagataatttgcattcctaatgagttcccaggtgatgctcatgttgccggtctggggaccacacttggaaaaacactgttataagccattcagtatggtgcctgatacacaatgagaactcaataGTGTTATTATGATAAGCATCTTGATGGTGTACATCAGTAGGGCTTTTGCAAAAAAAAATTCACACTTTATTAGAAATCTCTAGCCCATTTTTTGACACATACTTTTGATAAATGTTTATGGGTCACCTACAAAGGGCAAGACACCCCCACTGTGTTGAGTGACCAGCTGTCAAAGTCGGTTTGAAGCAGGGTTTCAGAGCACCAGTTACAGGACCATTATTATTACCACCTGAAATATTTTTCACCATTTCAACTTCCCACAAAACATACAGAAAAAAAAAAATTAGGTTTCTCTCCAATGTGTCATCTCCATTAGAAAGATTGTGAAGGGCCTATAAACAATAAGTGGAAGGGATGTGAAAATAGATCTAGATTCCATACTTGTTGGCTCTTTTATCAACTTCCTGAGATCACTGGGTGTGATGGAttttttttttttttttttgagacggagtctcgctctgttgcccaggctggggtgtagtggtttgatctcggctcactgcaagctccacctcctgg</dnaseq>|
 
sequence = <dnaseq>ataataataaaaaaaAGAAAACAGCAAGTAGAAAAGGAAGGCACAGAAAAAATGAAAGCATAATAATTCACTGAGGAATCAGCAACCTCAGAAATTCTATTTGTTAATTTTTCTATAAGGGGCCCAGGAGAGGAAACTATAATAAAATAATATTGTGGCCTTCATCCTCATGAGTCCTCACCTCCTCCTTCAGTGCAGGAACTTTCTTCTGGAATATTGCTGAGGATCAACACCTTTCCTGCTCACTGGCCGTCCGGTTCATGGTGGGAACACTTCTCTCCCCAGGGCTGGTTCCCACACTCATGTCTGAATAAGCCACGCAGTCTCTCATTAAAACAAAAAAAAGTCGTTACAGAAGCCTCTTTTTGGGGGAGGCTACTGCAAACTCAGGGAACTCGCTGAACAACCTATTTATTGGAACTGACAATTGTTCGCAATGGGTTTCCCTACAGGACAGGCTGGTGTGGGGAGATCTGGTGGTAAAGGCCAAGCACGTAGCACTTCTTCAGCACTGCATTTACAGATAGGAAATGGGACATGGCTTTCTTCCCAGGAAGAGCCTGTATGTTTATATTACTCCCACAAAGGGAAATCTGTAAAACCAGACCATTTTGTCCTAGAGTCATATAAAGTCATATCATTTGATTTTCAGAAACACTTAGAAGAAAAGGACGACTGTAGGCCTGCTTTACTATGTGCATAGGTGGGTAGAAGTGAGGAGGGCATATTATAAAATGAATTTGCATTCCATTGAGCCAACATGGTTATATCaaatattaaatattttatttattCAAGGACTACTAAGTGATTGTGACATCTAGAGGCCACATTCCCAGTAATTAAGAGCAAATGCCAtagctaatgcacaggagagggacaagactcagaagactttggttataattcctattcgacctctcactggctttccatgtccatctctacatagacaaggagcctgagggtagagactgtgtctcatttctaattcttcgtacttggattgtacctgcaaaacaggcactccacaaatgcttgttcactgagtATAttaggtgaatccacatggaactgccagtgtttttggtaaaaaatagtaatcaaatattacaatttcatgtgactcaacataaTATTTCCATCTAATTTTGTCCACATATTGTATGAATTTGCCTTTCCCTAAATGTGCTCATGTTTCTGTGCCCTACTTTTTAATTGAAAAGCCCTTTCTCCTGTCCTATATCGATCATATTCCTTCCTTGAACATTCTTGTGAATTACTCATTCCCAGGCACACCCAGCATTTGCTAGCTGGTATCTCTGTGTGTCCTCCTCTAAATTGTAGTCATATTGCATTTCCTCAGTGCCTACACAAACATTTGTCATAATGTTGAATTACCTATCTAAGGATAaagtcactatagctctgaaacccagtttccttcctagagaaagaagataatccctgcctggccaatataacagaactgttgagagttaacatatgagGACTTAAAATGATTAACAGTAAAGCCTCCAGGTTGTTCTTCTTAAAGGGGGTGGTTTGAAAATGTTAAGTGCTATTAATAGGCAATTTGTTTTCAGCTCAATCTCAGGGAGGGATTGACTTCCTAGCCAAAACATTTCAAAAGATGCATCCAGTTGACAGACTGAAAAGAGAATGTCGATCACATAGGGAGGACACACAAAGAGAACACAGACAGAGTCCTTGTGTTGAAGAGAAAGAGACCAAGAATTGTCACATGCACAATTATTCCCTTTAACTAGTAACAGGGGCACACAGCACTTGATAGGGTGAACTGAAAGAAATCAAAGGCTGCATGTGAGAGCAAACTAAGGACTGCTCTGTGTACAAATGAAGAACTTTTGGGGGAATAATTATAACAGCATTAAAGTAAGGAGAGGGGAGGGGAAAAGGAGGCAAGGAGGGAGAAGTGAGGGCTAAGAATATCATAGGACACACAAGAGAGTATCACAAGTACTTGGAGAAGATTCTAGACTCAATGAAGAGTGGCAGACTACTCCCTTAGGCACAATAGTTAAGGGATATTTCTTAGTTCTTAATTGGGAGAAGCTAGAGACTCAtaataaatatgtgacttttggcaagttgctgaatgttactttaaaaactggtattaatagttcctatcttatagagctgatataaacatgaaataagacattgaacataaacacacttacaaagtgctcagcatatggcaagtatataatacatattgTAATAGCTCTTATTATTTAACATTGTTTGGCAAACTATATGGTCATTCTCAAGTAATGTTTTTACTATATTCAAGAATTGTCCAGTTGAAGAACTCTCCAGGAAGAGTCTTGAACTTTACGTATTTGATCTATTATAAGCAAAACCAGTAAACTGAATACTGAAGAAGCAGTATCTATAGATGGTTCTatgacagaaatgttctccacctatatttatccactatgacaggcattaaccacatgaagccacagggcacttgaatgtgctgctaagaaagcaatttttaaaatttaattatttcaatttaaatGGACACATACCATATTGGACAGTGTTGCCCCCCATACGTACCAAAAGACCTTATACAGGTCACTGTGGCCTAGTGgggctctggattaggtgacctggatttgaaaccagaatcttccctttagaagctgaactacattaagcaagtaactcagcctcccatgcctcagtttcaacttttgcaatctgaggttgataacagtatctactttattggcttgtaaattaaattagagaatgcaaataaagcaatggttctcaaagttcagcatgccatcagtatcacctggaaggcgaagacaccaattgctgggttcatcctctaggttttttactcaacaggtctgagggagtcagataatttgcattcctaatgagttcccaggtgatgctcatgttgccggtctggggaccacacttggaaaaacactgttataagccattcagtatggtgcctgatacacaatgagaactcaataGTGTTATTATGATAAGCATCTTGATGGTGTACATCAGTAGGGCTTTTGCAAAAAAAAATTCACACTTTATTAGAAATCTCTAGCCCATTTTTTGACACATACTTTTGATAAATGTTTATGGGTCACCTACAAAGGGCAAGACACCCCCACTGTGTTGAGTGACCAGCTGTCAAAGTCGGTTTGAAGCAGGGTTTCAGAGCACCAGTTACAGGACCATTATTATTACCACCTGAAATATTTTTCACCATTTCAACTTCCCACAAAACATACAGAAAAAAAAAAATTAGGTTTCTCTCCAATGTGTCATCTCCATTAGAAAGATTGTGAAGGGCCTATAAACAATAAGTGGAAGGGATGTGAAAATAGATCTAGATTCCATACTTGTTGGCTCTTTTATCAACTTCCTGAGATCACTGGGTGTGATGGAttttttttttttttttttgagacggagtctcgctctgttgcccaggctggggtgtagtggtttgatctcggctcactgcaagctccacctcctgg</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG002572]]
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[[Category:Intergenic]][[Category:NONHSAG002572]][[Category:Transcripts]]

Latest revision as of 19:37, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005518

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3578 nt

Genomic location

chr1+:119569257..119572834

Exon number

1

Exons

119569257..119572834

Genome context

Sequence
000001 ataataataa aaaaaAGAAA ACAGCAAGTA GAAAAGGAAG GCACAGAAAA AATGAAAGCA TAATAATTCA CTGAGGAATC 000080
000081 AGCAACCTCA GAAATTCTAT TTGTTAATTT TTCTATAAGG GGCCCAGGAG AGGAAACTAT AATAAAATAA TATTGTGGCC 000160
000161 TTCATCCTCA TGAGTCCTCA CCTCCTCCTT CAGTGCAGGA ACTTTCTTCT GGAATATTGC TGAGGATCAA CACCTTTCCT 000240
000241 GCTCACTGGC CGTCCGGTTC ATGGTGGGAA CACTTCTCTC CCCAGGGCTG GTTCCCACAC TCATGTCTGA ATAAGCCACG 000320
000321 CAGTCTCTCA TTAAAACAAA AAAAAGTCGT TACAGAAGCC TCTTTTTGGG GGAGGCTACT GCAAACTCAG GGAACTCGCT 000400
000401 GAACAACCTA TTTATTGGAA CTGACAATTG TTCGCAATGG GTTTCCCTAC AGGACAGGCT GGTGTGGGGA GATCTGGTGG 000480
000481 TAAAGGCCAA GCACGTAGCA CTTCTTCAGC ACTGCATTTA CAGATAGGAA ATGGGACATG GCTTTCTTCC CAGGAAGAGC 000560
000561 CTGTATGTTT ATATTACTCC CACAAAGGGA AATCTGTAAA ACCAGACCAT TTTGTCCTAG AGTCATATAA AGTCATATCA 000640
000641 TTTGATTTTC AGAAACACTT AGAAGAAAAG GACGACTGTA GGCCTGCTTT ACTATGTGCA TAGGTGGGTA GAAGTGAGGA 000720
000721 GGGCATATTA TAAAATGAAT TTGCATTCCA TTGAGCCAAC ATGGTTATAT Caaatattaa atattttatt tattCAAGGA 000800
000801 CTACTAAGTG ATTGTGACAT CTAGAGGCCA CATTCCCAGT AATTAAGAGC AAATGCCAta gctaatgcac aggagaggga 000880
000881 caagactcag aagactttgg ttataattcc tattcgacct ctcactggct ttccatgtcc atctctacat agacaaggag 000960
000961 cctgagggta gagactgtgt ctcatttcta attcttcgta cttggattgt acctgcaaaa caggcactcc acaaatgctt 001040
001041 gttcactgag tATAttaggt gaatccacat ggaactgcca gtgtttttgg taaaaaatag taatcaaata ttacaatttc 001120
001121 atgtgactca acataaTATT TCCATCTAAT TTTGTCCACA TATTGTATGA ATTTGCCTTT CCCTAAATGT GCTCATGTTT 001200
001201 CTGTGCCCTA CTTTTTAATT GAAAAGCCCT TTCTCCTGTC CTATATCGAT CATATTCCTT CCTTGAACAT TCTTGTGAAT 001280
001281 TACTCATTCC CAGGCACACC CAGCATTTGC TAGCTGGTAT CTCTGTGTGT CCTCCTCTAA ATTGTAGTCA TATTGCATTT 001360
001361 CCTCAGTGCC TACACAAACA TTTGTCATAA TGTTGAATTA CCTATCTAAG GATAaagtca ctatagctct gaaacccagt 001440
001441 ttccttccta gagaaagaag ataatccctg cctggccaat ataacagaac tgttgagagt taacatatga gGACTTAAAA 001520
001521 TGATTAACAG TAAAGCCTCC AGGTTGTTCT TCTTAAAGGG GGTGGTTTGA AAATGTTAAG TGCTATTAAT AGGCAATTTG 001600
001601 TTTTCAGCTC AATCTCAGGG AGGGATTGAC TTCCTAGCCA AAACATTTCA AAAGATGCAT CCAGTTGACA GACTGAAAAG 001680
001681 AGAATGTCGA TCACATAGGG AGGACACACA AAGAGAACAC AGACAGAGTC CTTGTGTTGA AGAGAAAGAG ACCAAGAATT 001760
001761 GTCACATGCA CAATTATTCC CTTTAACTAG TAACAGGGGC ACACAGCACT TGATAGGGTG AACTGAAAGA AATCAAAGGC 001840
001841 TGCATGTGAG AGCAAACTAA GGACTGCTCT GTGTACAAAT GAAGAACTTT TGGGGGAATA ATTATAACAG CATTAAAGTA 001920
001921 AGGAGAGGGG AGGGGAAAAG GAGGCAAGGA GGGAGAAGTG AGGGCTAAGA ATATCATAGG ACACACAAGA GAGTATCACA 002000
002001 AGTACTTGGA GAAGATTCTA GACTCAATGA AGAGTGGCAG ACTACTCCCT TAGGCACAAT AGTTAAGGGA TATTTCTTAG 002080
002081 TTCTTAATTG GGAGAAGCTA GAGACTCAta ataaatatgt gacttttggc aagttgctga atgttacttt aaaaactggt 002160
002161 attaatagtt cctatcttat agagctgata taaacatgaa ataagacatt gaacataaac acacttacaa agtgctcagc 002240
002241 atatggcaag tatataatac atattgTAAT AGCTCTTATT ATTTAACATT GTTTGGCAAA CTATATGGTC ATTCTCAAGT 002320
002321 AATGTTTTTA CTATATTCAA GAATTGTCCA GTTGAAGAAC TCTCCAGGAA GAGTCTTGAA CTTTACGTAT TTGATCTATT 002400
002401 ATAAGCAAAA CCAGTAAACT GAATACTGAA GAAGCAGTAT CTATAGATGG TTCTatgaca gaaatgttct ccacctatat 002480
002481 ttatccacta tgacaggcat taaccacatg aagccacagg gcacttgaat gtgctgctaa gaaagcaatt tttaaaattt 002560
002561 aattatttca atttaaatGG ACACATACCA TATTGGACAG TGTTGCCCCC CATACGTACC AAAAGACCTT ATACAGGTCA 002640
002641 CTGTGGCCTA GTGgggctct ggattaggtg acctggattt gaaaccagaa tcttcccttt agaagctgaa ctacattaag 002720
002721 caagtaactc agcctcccat gcctcagttt caacttttgc aatctgaggt tgataacagt atctacttta ttggcttgta 002800
002801 aattaaatta gagaatgcaa ataaagcaat ggttctcaaa gttcagcatg ccatcagtat cacctggaag gcgaagacac 002880
002881 caattgctgg gttcatcctc taggtttttt actcaacagg tctgagggag tcagataatt tgcattccta atgagttccc 002960
002961 aggtgatgct catgttgccg gtctggggac cacacttgga aaaacactgt tataagccat tcagtatggt gcctgataca 003040
003041 caatgagaac tcaataGTGT TATTATGATA AGCATCTTGA TGGTGTACAT CAGTAGGGCT TTTGCAAAAA AAAATTCACA 003120
003121 CTTTATTAGA AATCTCTAGC CCATTTTTTG ACACATACTT TTGATAAATG TTTATGGGTC ACCTACAAAG GGCAAGACAC 003200
003201 CCCCACTGTG TTGAGTGACC AGCTGTCAAA GTCGGTTTGA AGCAGGGTTT CAGAGCACCA GTTACAGGAC CATTATTATT 003280
003281 ACCACCTGAA ATATTTTTCA CCATTTCAAC TTCCCACAAA ACATACAGAA AAAAAAAAAT TAGGTTTCTC TCCAATGTGT 003360
003361 CATCTCCATT AGAAAGATTG TGAAGGGCCT ATAAACAATA AGTGGAAGGG ATGTGAAAAT AGATCTAGAT TCCATACTTG 003440
003441 TTGGCTCTTT TATCAACTTC CTGAGATCAC TGGGTGTGAT GGAttttttt tttttttttt tgagacggag tctcgctctg 003520
003521 ttgcccaggc tggggtgtag tggtttgatc tcggctcact gcaagctcca cctcctgg
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Predicted Small Protein

Name NONHSAT005518_smProtein_1166:1312
Length 49
Molecular weight 5437.3969
Aromaticity 0.145833333333
Instability index 67.6583333333
Isoelectric point 6.68499755859
Runs 9
Runs residual 0.0219298245614
Runs probability 0.0628275334158
Amino acid sequence MNLPFPKCAHVSVPYFLIEKPFLLSYIDHIPSLNILVNYSFPGTPSIC
Secondary structure LLLLLLLEEEEELLLEEEELLHHHHHLLLLLLLLEEEELLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooo