Difference between revisions of "NONHSAT006808"
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sequence = <dnaseq>cccccccaccgcccccggcagcgttccccccttaacaccttcccccAGGTGGTGAGGGGCCAAAGCTCGGGGATGGACAAGAGAAAGGAAGGAGATGTCACTGCTGAATTTCTGCTGAATTTCCTTCTGCCTGCTGCCCGATTTCTATTTGACTGGCAATAGTCTGCACCTCTGCACAGACTTCCTCCAGCcagagtggcagaagacagagaagcatgtccaggatttggaccagactgcctggtcccagttctgcactgggcctgttacttacggcctagttttaggaaagtcagcctcatctgcaaagcagggaaataatttccaacccatgaggttgttgtatggacccagttgagaatgtatgaaaacatgcaacaactataaagattgttaaaatAGGAGGACCTATTAGAGCCTTTGCCCCGGCGTCGGTGACTCAGTGTTCGCGGGAGCGCCGCACCTACACCAGCCAACCCAGATCCCGAGGTCCGACAGCGCCCGGCCCAGATCCCCACGCCTGCCAGGAGCAAGCCGAGAGCCAGCCGGCCGGCGCACTCCGACTCCGA</dnaseq>| | sequence = <dnaseq>cccccccaccgcccccggcagcgttccccccttaacaccttcccccAGGTGGTGAGGGGCCAAAGCTCGGGGATGGACAAGAGAAAGGAAGGAGATGTCACTGCTGAATTTCTGCTGAATTTCCTTCTGCCTGCTGCCCGATTTCTATTTGACTGGCAATAGTCTGCACCTCTGCACAGACTTCCTCCAGCcagagtggcagaagacagagaagcatgtccaggatttggaccagactgcctggtcccagttctgcactgggcctgttacttacggcctagttttaggaaagtcagcctcatctgcaaagcagggaaataatttccaacccatgaggttgttgtatggacccagttgagaatgtatgaaaacatgcaacaactataaagattgttaaaatAGGAGGACCTATTAGAGCCTTTGCCCCGGCGTCGGTGACTCAGTGTTCGCGGGAGCGCCGCACCTACACCAGCCAACCCAGATCCCGAGGTCCGACAGCGCCCGGCCCAGATCCCCACGCCTGCCAGGAGCAAGCCGAGAGCCAGCCGGCCGGCGCACTCCGACTCCGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG003101]] | + | [[Category:Intergenic]][[Category:NONHSAG003101]][[Category:Transcripts]] |
Latest revision as of 19:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006808 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
569 nt |
Genomic location |
chr1+:156076449..156084629 |
Exon number |
3 |
Exons |
156076449..156076614,156079304..156079537,156084461..156084629 |
Genome context |
|
Sequence |
000001 cccccccacc gcccccggca gcgttccccc cttaacacct tcccccAGGT GGTGAGGGGC CAAAGCTCGG GGATGGACAA 000080
000081 GAGAAAGGAA GGAGATGTCA CTGCTGAATT TCTGCTGAAT TTCCTTCTGC CTGCTGCCCG ATTTCTATTT GACTGGCAAT 000160 000161 AGTCTGCACC TCTGCACAGA CTTCCTCCAG Ccagagtggc agaagacaga gaagcatgtc caggatttgg accagactgc 000240 000241 ctggtcccag ttctgcactg ggcctgttac ttacggccta gttttaggaa agtcagcctc atctgcaaag cagggaaata 000320 000321 atttccaacc catgaggttg ttgtatggac ccagttgaga atgtatgaaa acatgcaaca actataaaga ttgttaaaat 000400 000401 AGGAGGACCT ATTAGAGCCT TTGCCCCGGC GTCGGTGACT CAGTGTTCGC GGGAGCGCCG CACCTACACC AGCCAACCCA 000480 000481 GATCCCGAGG TCCGACAGCG CCCGGCCCAG ATCCCCACGC CTGCCAGGAG CAAGCCGAGA GCCAGCCGGC CGGCGCACTC 000560 000561 CGACTCCGA |
Predicted Small Protein
Name | NONHSAT006808_smProtein_215:280 |
Length | 22 |
Molecular weight | 2240.6667 |
Aromaticity | 0.047619047619 |
Instability index | 59.9761904762 |
Isoelectric point | 12.0000610352 |
Runs | 5 |
Runs residual | 0.00816326530612 |
Runs probability | 0.0239357004063 |
Amino acid sequence | MSRIWTRLPGPSSALGLLLTA |
Secondary structure | LLLEELLLLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |