Difference between revisions of "NONHSAT006808"

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sequence = <dnaseq>cccccccaccgcccccggcagcgttccccccttaacaccttcccccAGGTGGTGAGGGGCCAAAGCTCGGGGATGGACAAGAGAAAGGAAGGAGATGTCACTGCTGAATTTCTGCTGAATTTCCTTCTGCCTGCTGCCCGATTTCTATTTGACTGGCAATAGTCTGCACCTCTGCACAGACTTCCTCCAGCcagagtggcagaagacagagaagcatgtccaggatttggaccagactgcctggtcccagttctgcactgggcctgttacttacggcctagttttaggaaagtcagcctcatctgcaaagcagggaaataatttccaacccatgaggttgttgtatggacccagttgagaatgtatgaaaacatgcaacaactataaagattgttaaaatAGGAGGACCTATTAGAGCCTTTGCCCCGGCGTCGGTGACTCAGTGTTCGCGGGAGCGCCGCACCTACACCAGCCAACCCAGATCCCGAGGTCCGACAGCGCCCGGCCCAGATCCCCACGCCTGCCAGGAGCAAGCCGAGAGCCAGCCGGCCGGCGCACTCCGACTCCGA</dnaseq>|
 
sequence = <dnaseq>cccccccaccgcccccggcagcgttccccccttaacaccttcccccAGGTGGTGAGGGGCCAAAGCTCGGGGATGGACAAGAGAAAGGAAGGAGATGTCACTGCTGAATTTCTGCTGAATTTCCTTCTGCCTGCTGCCCGATTTCTATTTGACTGGCAATAGTCTGCACCTCTGCACAGACTTCCTCCAGCcagagtggcagaagacagagaagcatgtccaggatttggaccagactgcctggtcccagttctgcactgggcctgttacttacggcctagttttaggaaagtcagcctcatctgcaaagcagggaaataatttccaacccatgaggttgttgtatggacccagttgagaatgtatgaaaacatgcaacaactataaagattgttaaaatAGGAGGACCTATTAGAGCCTTTGCCCCGGCGTCGGTGACTCAGTGTTCGCGGGAGCGCCGCACCTACACCAGCCAACCCAGATCCCGAGGTCCGACAGCGCCCGGCCCAGATCCCCACGCCTGCCAGGAGCAAGCCGAGAGCCAGCCGGCCGGCGCACTCCGACTCCGA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG003101]]
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[[Category:Intergenic]][[Category:NONHSAG003101]][[Category:Transcripts]]

Latest revision as of 19:42, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT006808

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

569 nt

Genomic location

chr1+:156076449..156084629

Exon number

3

Exons

156076449..156076614,156079304..156079537,156084461..156084629

Genome context

Sequence
000001 cccccccacc gcccccggca gcgttccccc cttaacacct tcccccAGGT GGTGAGGGGC CAAAGCTCGG GGATGGACAA 000080
000081 GAGAAAGGAA GGAGATGTCA CTGCTGAATT TCTGCTGAAT TTCCTTCTGC CTGCTGCCCG ATTTCTATTT GACTGGCAAT 000160
000161 AGTCTGCACC TCTGCACAGA CTTCCTCCAG Ccagagtggc agaagacaga gaagcatgtc caggatttgg accagactgc 000240
000241 ctggtcccag ttctgcactg ggcctgttac ttacggccta gttttaggaa agtcagcctc atctgcaaag cagggaaata 000320
000321 atttccaacc catgaggttg ttgtatggac ccagttgaga atgtatgaaa acatgcaaca actataaaga ttgttaaaat 000400
000401 AGGAGGACCT ATTAGAGCCT TTGCCCCGGC GTCGGTGACT CAGTGTTCGC GGGAGCGCCG CACCTACACC AGCCAACCCA 000480
000481 GATCCCGAGG TCCGACAGCG CCCGGCCCAG ATCCCCACGC CTGCCAGGAG CAAGCCGAGA GCCAGCCGGC CGGCGCACTC 000560
000561 CGACTCCGA
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Predicted Small Protein

Name NONHSAT006808_smProtein_215:280
Length 22
Molecular weight 2240.6667
Aromaticity 0.047619047619
Instability index 59.9761904762
Isoelectric point 12.0000610352
Runs 5
Runs residual 0.00816326530612
Runs probability 0.0239357004063
Amino acid sequence MSRIWTRLPGPSSALGLLLTA
Secondary structure LLLEELLLLLLHHHHHHHHLL
PRMN -
PiMo -