Difference between revisions of "NONHSAT006813"
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sequence = <dnaseq>CCCGGAGAGCTTGACAGTGTCCCTCTGGGGTGGAAATGAGTTCCTTAGCTCCATCACCACAGAGGACAGAGTAAGCAGCAGGCCGGACAAAGGGCAGGCCACAAGAAAAGTTGCAGGTGGTCACTGGGGTAGACATGCTGTACAACCCTTCCCTGGCCCTGACCCTTGGACCTGGTTCCATGTCCCCACCAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGTGGTTGAGGACGACGAGGATGAGGATGGAGATGACCTGCTCCATCACCACCACGGCTCCCACTGCAGCAGCTCGGGGGACCCCGCTGAGTACAACCTGCGCTCGCGCACCGTGCTGTGCGGGACCTGCGGGCAGCCTGCCGACAAGGCATCTGCCAGCGGCTCAGGAGCCCAGGTGGGCGGACCCATCTCCTCTGGCTCTTCTGCCTCCAGTGTCACGGTCACTCGCAGCTACCGCAGTGTGGGGGGCAGTGGGGGTGGCAGCTTCGGGGACAATCTGGTCACCCGCTCCTACCTCCTGGGCAACTCCAGCCCCCGAACCCAGAGCCCCCAGAACTGCAGCATCATG</dnaseq>| | sequence = <dnaseq>CCCGGAGAGCTTGACAGTGTCCCTCTGGGGTGGAAATGAGTTCCTTAGCTCCATCACCACAGAGGACAGAGTAAGCAGCAGGCCGGACAAAGGGCAGGCCACAAGAAAAGTTGCAGGTGGTCACTGGGGTAGACATGCTGTACAACCCTTCCCTGGCCCTGACCCTTGGACCTGGTTCCATGTCCCCACCAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGTGGTTGAGGACGACGAGGATGAGGATGGAGATGACCTGCTCCATCACCACCACGGCTCCCACTGCAGCAGCTCGGGGGACCCCGCTGAGTACAACCTGCGCTCGCGCACCGTGCTGTGCGGGACCTGCGGGCAGCCTGCCGACAAGGCATCTGCCAGCGGCTCAGGAGCCCAGGTGGGCGGACCCATCTCCTCTGGCTCTTCTGCCTCCAGTGTCACGGTCACTCGCAGCTACCGCAGTGTGGGGGGCAGTGGGGGTGGCAGCTTCGGGGACAATCTGGTCACCCGCTCCTACCTCCTGGGCAACTCCAGCCCCCGAACCCAGAGCCCCCAGAACTGCAGCATCATG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG003104]] | + | [[Category:Sense]][[Category:NONHSAG003104]][[Category:Transcripts]] |
Latest revision as of 19:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT006813 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
576 nt |
| Genomic location |
chr1+:156107253..156108894 |
| Exon number |
3 |
| Exons |
156107253..156107534,156108279..156108548,156108871..156108894 |
| Genome context |
|
| Sequence |
000001 CCCGGAGAGC TTGACAGTGT CCCTCTGGGG TGGAAATGAG TTCCTTAGCT CCATCACCAC AGAGGACAGA GTAAGCAGCA 000080
000081 GGCCGGACAA AGGGCAGGCC ACAAGAAAAG TTGCAGGTGG TCACTGGGGT AGACATGCTG TACAACCCTT CCCTGGCCCT 000160 000161 GACCCTTGGA CCTGGTTCCA TGTCCCCACC AGGAAGTGGC CATGCGCAAG CTGGTGCGCT CAGTGACTGT GGTTGAGGAC 000240 000241 GACGAGGATG AGGATGGAGA TGACCTGCTC CATCACCACC ACGGCTCCCA CTGCAGCAGC TCGGGGGACC CCGCTGAGTA 000320 000321 CAACCTGCGC TCGCGCACCG TGCTGTGCGG GACCTGCGGG CAGCCTGCCG ACAAGGCATC TGCCAGCGGC TCAGGAGCCC 000400 000401 AGGTGGGCGG ACCCATCTCC TCTGGCTCTT CTGCCTCCAG TGTCACGGTC ACTCGCAGCT ACCGCAGTGT GGGGGGCAGT 000480 000481 GGGGGTGGCA GCTTCGGGGA CAATCTGGTC ACCCGCTCCT ACCTCCTGGG CAACTCCAGC CCCCGAACCC AGAGCCCCCA 000560 000561 GAACTGCAGC ATCATG |
Predicted Small Protein
| Name | NONHSAT006813_smProtein_134:235 |
| Length | 34 |
| Molecular weight | 3158.5405 |
| Aromaticity | 0.030303030303 |
| Instability index | 44.5545454545 |
| Isoelectric point | 5.06036376953 |
| Runs | 5 |
| Runs residual | 0.0326086956522 |
| Runs probability | 0.0374845433669 |
| Amino acid sequence | MLYNPSLALTLGPGSMSPPGSGHAQAGALSDCG |
| Secondary structure | LLLLLLEEELLLLLLLLLLLLHHHHLLLLLLLL |
| PRMN | - |
| PiMo | - |
