Difference between revisions of "NONHSAT007576"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAATAATGAACCATCTGTCGCCCTGCAAGTTTCCTCATAACCCTTGATAATCCATTGCTCTCCCAGTCCCTAGGCAACCAGTGCTCTGCTTTCTGTCACTGTAGTTTGTATTTCTAAAATTTTTTATAAATGAAATCATGCAGTATGCCCCCTTTTTAAAACCTGGCTTTATTCAGCATGGTTTTTGAGATTCATCCATGTGTTAATAGTTGGGTTTTTTAATTTTCTGAGTAGTATTCCATTGTATGATGCTGCAGTTCGTTTATGCATTCACTTATGTGTGGATTTTTGGGTTGTTTCTACTTTTTGGCTTTTACATATAAAGCTGTTATAAACATTTGTGTGCAGGTTTTTGTGTGGATATATGCTATTATTTCTCTTGGAAATAAAAATACCTAGGAGTAGAATGGTTGGTGTAAGTTTACAATTGTTTTCCAAAGTGGTTGCACCATTTTATATTGTCACCAGCATTGTATGAGAATTCCAGTTGCTCCATATCCTCGTCATTACATATGGTCAGTCTTTTTCAGCCTCTTTCATTCTAGCCATTCTAGTGGATGTGTAGTGGTATCTTGTTGTGGTTTTAATTTGCATTTCCTTAATGACATATGATGTTGAACATCTAGTAGTGTGCTTATTTTTCGTCCTCTTACCTTCTTTGGTGAAGTATGTGTTCAAATCTTGCCCATTTTAAAATTTTTCTCATTGAGTTGTGTTTTTTTGGCTTTTTTTTTTTTTTTTTTTGAGACAAGGTATTACTTTTGCCCAGGTTGGTAGAGTGTCCTGGCGCAGTCTTGGCTCACCACAGCTTCAAACTACTGGGCTCAAATGATCTTCTCGCCTCAGCCTCCCAAGTAGCTGGGACTACGGGTGTGTGCCATCACACCCAACTAATTATTATATTTATTTATATTTTGCAGAGATGAGGTCTCACTTTGTTTCCCAGGCTGGTCTCAAACTCCTGGCCTCAACTGATCCTCCCACCCCTCCTGAGTAGTCAGGTCTACAGGCACATGCCACCATGCCCAGCTAATTGTTTTGTTTTTTATTGAGATGAGGTCTTGCTATGTTACTTAGGCTGATCTCAAACTCCTGGGCTCAAACAATCCTTCTGCCTCAGCTTCCCAAAGTGCTGAGATTACAGACATGAGTCACTGCACTCAGCCTACTTGAGGATCTTGAATGCTCAGATTCCCCAGAACTCCCTGGACCTGCAGAAGTGGCCCAGTCCCCCTTGTTGAAACATAAAACCCCATTTCCCCCTTCACTCTTGCTTGCTTGAAAGCTATTCAGTAGCCTCAAAACAAGGCAAGTAACTTCCAGGAGGATGCTGGCCCATCTCAGGATCTGCCCTCTACTACCTACCTGGCCACCAGACCCATAACCCCTCTGGAATCAAGGCTCAAGAGAGAAGTTTAATGATTTGCCCGGCACTTACACAGGTGATGTGTGACAGAGGCGAGGCTGTAATCCAAAGTGGAACAAGTGATCAGATTCTTTACGGGAAGCTGCAGACACTAAGGCAGTTTTCCTTTCTAAATAAATCTCTCAGACTTTCACTGAGTCAATAGAGATGGGAAACAGGTGATAAACAAGTATCATACACTCAGATTATTAAGTTACTACCCAGTCCATTTTTTTCATTAACCTTCTTTCCCATATGTAAGGCTGGCTACATAATTTCCAGGACCCAACGCAAAATTAAAATGTGGGGCACATTTTTAAAAGCACAGAGAACTTTGCCTGTGGCAACAGCCATGGTGAGAGGAGCGTGGCTCTCTCCTCTCCACCATGGCATGTGCTCGCCTACTAATA</dnaseq>| | sequence = <dnaseq>AAATAATGAACCATCTGTCGCCCTGCAAGTTTCCTCATAACCCTTGATAATCCATTGCTCTCCCAGTCCCTAGGCAACCAGTGCTCTGCTTTCTGTCACTGTAGTTTGTATTTCTAAAATTTTTTATAAATGAAATCATGCAGTATGCCCCCTTTTTAAAACCTGGCTTTATTCAGCATGGTTTTTGAGATTCATCCATGTGTTAATAGTTGGGTTTTTTAATTTTCTGAGTAGTATTCCATTGTATGATGCTGCAGTTCGTTTATGCATTCACTTATGTGTGGATTTTTGGGTTGTTTCTACTTTTTGGCTTTTACATATAAAGCTGTTATAAACATTTGTGTGCAGGTTTTTGTGTGGATATATGCTATTATTTCTCTTGGAAATAAAAATACCTAGGAGTAGAATGGTTGGTGTAAGTTTACAATTGTTTTCCAAAGTGGTTGCACCATTTTATATTGTCACCAGCATTGTATGAGAATTCCAGTTGCTCCATATCCTCGTCATTACATATGGTCAGTCTTTTTCAGCCTCTTTCATTCTAGCCATTCTAGTGGATGTGTAGTGGTATCTTGTTGTGGTTTTAATTTGCATTTCCTTAATGACATATGATGTTGAACATCTAGTAGTGTGCTTATTTTTCGTCCTCTTACCTTCTTTGGTGAAGTATGTGTTCAAATCTTGCCCATTTTAAAATTTTTCTCATTGAGTTGTGTTTTTTTGGCTTTTTTTTTTTTTTTTTTTGAGACAAGGTATTACTTTTGCCCAGGTTGGTAGAGTGTCCTGGCGCAGTCTTGGCTCACCACAGCTTCAAACTACTGGGCTCAAATGATCTTCTCGCCTCAGCCTCCCAAGTAGCTGGGACTACGGGTGTGTGCCATCACACCCAACTAATTATTATATTTATTTATATTTTGCAGAGATGAGGTCTCACTTTGTTTCCCAGGCTGGTCTCAAACTCCTGGCCTCAACTGATCCTCCCACCCCTCCTGAGTAGTCAGGTCTACAGGCACATGCCACCATGCCCAGCTAATTGTTTTGTTTTTTATTGAGATGAGGTCTTGCTATGTTACTTAGGCTGATCTCAAACTCCTGGGCTCAAACAATCCTTCTGCCTCAGCTTCCCAAAGTGCTGAGATTACAGACATGAGTCACTGCACTCAGCCTACTTGAGGATCTTGAATGCTCAGATTCCCCAGAACTCCCTGGACCTGCAGAAGTGGCCCAGTCCCCCTTGTTGAAACATAAAACCCCATTTCCCCCTTCACTCTTGCTTGCTTGAAAGCTATTCAGTAGCCTCAAAACAAGGCAAGTAACTTCCAGGAGGATGCTGGCCCATCTCAGGATCTGCCCTCTACTACCTACCTGGCCACCAGACCCATAACCCCTCTGGAATCAAGGCTCAAGAGAGAAGTTTAATGATTTGCCCGGCACTTACACAGGTGATGTGTGACAGAGGCGAGGCTGTAATCCAAAGTGGAACAAGTGATCAGATTCTTTACGGGAAGCTGCAGACACTAAGGCAGTTTTCCTTTCTAAATAAATCTCTCAGACTTTCACTGAGTCAATAGAGATGGGAAACAGGTGATAAACAAGTATCATACACTCAGATTATTAAGTTACTACCCAGTCCATTTTTTTCATTAACCTTCTTTCCCATATGTAAGGCTGGCTACATAATTTCCAGGACCCAACGCAAAATTAAAATGTGGGGCACATTTTTAAAAGCACAGAGAACTTTGCCTGTGGCAACAGCCATGGTGAGAGGAGCGTGGCTCTCTCCTCTCCACCATGGCATGTGCTCGCCTACTAATA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:46, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT007576 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1815 nt |
| Genomic location |
chr1-:171653555..171697124 |
| Exon number |
2 |
| Exons |
171653555..171654384,171696140..171697124 |
| Genome context |
|
| Sequence |
000001 AAATAATGAA CCATCTGTCG CCCTGCAAGT TTCCTCATAA CCCTTGATAA TCCATTGCTC TCCCAGTCCC TAGGCAACCA 000080
000081 GTGCTCTGCT TTCTGTCACT GTAGTTTGTA TTTCTAAAAT TTTTTATAAA TGAAATCATG CAGTATGCCC CCTTTTTAAA 000160 000161 ACCTGGCTTT ATTCAGCATG GTTTTTGAGA TTCATCCATG TGTTAATAGT TGGGTTTTTT AATTTTCTGA GTAGTATTCC 000240 000241 ATTGTATGAT GCTGCAGTTC GTTTATGCAT TCACTTATGT GTGGATTTTT GGGTTGTTTC TACTTTTTGG CTTTTACATA 000320 000321 TAAAGCTGTT ATAAACATTT GTGTGCAGGT TTTTGTGTGG ATATATGCTA TTATTTCTCT TGGAAATAAA AATACCTAGG 000400 000401 AGTAGAATGG TTGGTGTAAG TTTACAATTG TTTTCCAAAG TGGTTGCACC ATTTTATATT GTCACCAGCA TTGTATGAGA 000480 000481 ATTCCAGTTG CTCCATATCC TCGTCATTAC ATATGGTCAG TCTTTTTCAG CCTCTTTCAT TCTAGCCATT CTAGTGGATG 000560 000561 TGTAGTGGTA TCTTGTTGTG GTTTTAATTT GCATTTCCTT AATGACATAT GATGTTGAAC ATCTAGTAGT GTGCTTATTT 000640 000641 TTCGTCCTCT TACCTTCTTT GGTGAAGTAT GTGTTCAAAT CTTGCCCATT TTAAAATTTT TCTCATTGAG TTGTGTTTTT 000720 000721 TTGGCTTTTT TTTTTTTTTT TTTTGAGACA AGGTATTACT TTTGCCCAGG TTGGTAGAGT GTCCTGGCGC AGTCTTGGCT 000800 000801 CACCACAGCT TCAAACTACT GGGCTCAAAT GATCTTCTCG CCTCAGCCTC CCAAGTAGCT GGGACTACGG GTGTGTGCCA 000880 000881 TCACACCCAA CTAATTATTA TATTTATTTA TATTTTGCAG AGATGAGGTC TCACTTTGTT TCCCAGGCTG GTCTCAAACT 000960 000961 CCTGGCCTCA ACTGATCCTC CCACCCCTCC TGAGTAGTCA GGTCTACAGG CACATGCCAC CATGCCCAGC TAATTGTTTT 001040 001041 GTTTTTTATT GAGATGAGGT CTTGCTATGT TACTTAGGCT GATCTCAAAC TCCTGGGCTC AAACAATCCT TCTGCCTCAG 001120 001121 CTTCCCAAAG TGCTGAGATT ACAGACATGA GTCACTGCAC TCAGCCTACT TGAGGATCTT GAATGCTCAG ATTCCCCAGA 001200 001201 ACTCCCTGGA CCTGCAGAAG TGGCCCAGTC CCCCTTGTTG AAACATAAAA CCCCATTTCC CCCTTCACTC TTGCTTGCTT 001280 001281 GAAAGCTATT CAGTAGCCTC AAAACAAGGC AAGTAACTTC CAGGAGGATG CTGGCCCATC TCAGGATCTG CCCTCTACTA 001360 001361 CCTACCTGGC CACCAGACCC ATAACCCCTC TGGAATCAAG GCTCAAGAGA GAAGTTTAAT GATTTGCCCG GCACTTACAC 001440 001441 AGGTGATGTG TGACAGAGGC GAGGCTGTAA TCCAAAGTGG AACAAGTGAT CAGATTCTTT ACGGGAAGCT GCAGACACTA 001520 001521 AGGCAGTTTT CCTTTCTAAA TAAATCTCTC AGACTTTCAC TGAGTCAATA GAGATGGGAA ACAGGTGATA AACAAGTATC 001600 001601 ATACACTCAG ATTATTAAGT TACTACCCAG TCCATTTTTT TCATTAACCT TCTTTCCCAT ATGTAAGGCT GGCTACATAA 001680 001681 TTTCCAGGAC CCAACGCAAA ATTAAAATGT GGGGCACATT TTTAAAAGCA CAGAGAACTT TGCCTGTGGC AACAGCCATG 001760 001761 GTGAGAGGAG CGTGGCTCTC TCCTCTCCAC CATGGCATGT GCTCGCCTAC TAATA |
Predicted Small Protein
| Name | NONHSAT007576_smProtein_1418:1570 |
| Length | 51 |
| Molecular weight | 5590.4782 |
| Aromaticity | 0.06 |
| Instability index | 44.63 |
| Isoelectric point | 8.84014892578 |
| Runs | 7 |
| Runs residual | 0.0246783625731 |
| Runs probability | 0.0423827188534 |
| Amino acid sequence | MICPALTQVMCDRGEAVIQSGTSDQILYGKLQTLRQFSFLNKSLRLSLSQ |
| Secondary structure | LLLHHHHHHHHLLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
| PRMN | - |
| PiMo | - |