Difference between revisions of "NONHSAT008941"

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sequence = <dnaseq>CAGGTTGAGTCCTTCCACCTCATTATCATCCTAGGTAGGAGTGGAAGATGAATACCAGCCTGTGAGCCAATGCTTTCATTTTTGGCTGCAGCCAACTGGTTGTCTAAGGCTGGGAAGGGGTTAAGATGCCCCCGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTGCTAGAAAAAGGCAGGGGACATAATCCATACTGGCCTCTTTCCCAGGCACATCACAGTGGCAGAATTATTTATGATTCTGACCCAATGGGGATCCCTCTACTTGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGGGGAACAAGTAGCATTTATGGAGCGGCACAGAGGAAAGAGTGTGGGCTTTGGAGACAGCACAGCAGCACTCACATCCCGGCCCAGACACTTCCTGTGTGACCTTGAGCCAGTTGATGAACCTGTCTGGGCCTCTGTTTCCTCATCTGTTATCGGCGAAAATGTTTCGGAGGACACCTATTGTATAATGTTGCTATGCAGATTAAATGCACTAGCAGAGGCAAAGTGCATAGCTTAGAGGAAGGAAGTACTCGCTAAGTGGTAGCTGGTGTGATAGGTGGGCCAAGTCCTGGCAGGAGCTGGG</dnaseq>|
 
sequence = <dnaseq>CAGGTTGAGTCCTTCCACCTCATTATCATCCTAGGTAGGAGTGGAAGATGAATACCAGCCTGTGAGCCAATGCTTTCATTTTTGGCTGCAGCCAACTGGTTGTCTAAGGCTGGGAAGGGGTTAAGATGCCCCCGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTGCTAGAAAAAGGCAGGGGACATAATCCATACTGGCCTCTTTCCCAGGCACATCACAGTGGCAGAATTATTTATGATTCTGACCCAATGGGGATCCCTCTACTTGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGGGGAACAAGTAGCATTTATGGAGCGGCACAGAGGAAAGAGTGTGGGCTTTGGAGACAGCACAGCAGCACTCACATCCCGGCCCAGACACTTCCTGTGTGACCTTGAGCCAGTTGATGAACCTGTCTGGGCCTCTGTTTCCTCATCTGTTATCGGCGAAAATGTTTCGGAGGACACCTATTGTATAATGTTGCTATGCAGATTAAATGCACTAGCAGAGGCAAAGTGCATAGCTTAGAGGAAGGAAGTACTCGCTAAGTGGTAGCTGGTGTGATAGGTGGGCCAAGTCCTGGCAGGAGCTGGG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG004026]][[Category:Transcripts]]

Latest revision as of 19:51, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT008941

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

699 nt

Genomic location

chr1-:204338238..204338936

Exon number

1

Exons

204338238..204338936

Genome context

Sequence
000001 CAGGTTGAGT CCTTCCACCT CATTATCATC CTAGGTAGGA GTGGAAGATG AATACCAGCC TGTGAGCCAA TGCTTTCATT 000080
000081 TTTGGCTGCA GCCAACTGGT TGTCTAAGGC TGGGAAGGGG TTAAGATGCC CCCGGAGCTT GCCGCGAGGG CAGCTGCCTC 000160
000161 AGCGGGCACT CCGCCTGGAT GGGAATATAA GCACTCTTGG TGTTGCCCAG GCAGAGAGGG CAGTGTGGAG GGAAGTTGCT 000240
000241 AGAAAAAGGC AGGGGACATA ATCCATACTG GCCTCTTTCC CAGGCACATC ACAGTGGCAG AATTATTTAT GATTCTGACC 000320
000321 CAATGGGGAT CCCTCTACTT GGGGAGACTG CCAACCCACG CCCTCCTGAA TGGCAACGTC CTCCCACAGA GACAGAGGGG 000400
000401 AACAAGTAGC ATTTATGGAG CGGCACAGAG GAAAGAGTGT GGGCTTTGGA GACAGCACAG CAGCACTCAC ATCCCGGCCC 000480
000481 AGACACTTCC TGTGTGACCT TGAGCCAGTT GATGAACCTG TCTGGGCCTC TGTTTCCTCA TCTGTTATCG GCGAAAATGT 000560
000561 TTCGGAGGAC ACCTATTGTA TAATGTTGCT ATGCAGATTA AATGCACTAG CAGAGGCAAA GTGCATAGCT TAGAGGAAGG 000640
000641 AAGTACTCGC TAAGTGGTAG CTGGTGTGAT AGGTGGGCCA AGTCCTGGCA GGAGCTGGG
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Predicted Small Protein

Name NONHSAT008941_smProtein_308:496
Length 63
Molecular weight 6909.8729
Aromaticity 0.0645161290323
Instability index 49.3790322581
Isoelectric point 10.8866577148
Runs 10
Runs residual 0.00764976958525
Runs probability 0.036663133722
Amino acid sequence MILTQWGSLYLGRLPTHALLNGNVLPQRQRGTSSIYGAAQRKECGLWRQHSSTHIPAQTL
PV
Secondary structure LEEEEELLLLLLLLLLHHHHLLLLLLLLLLLLLLEEHHHHHHLLLLEEELLLLLLLLLLL
LL
PRMN -
PiMo -