Difference between revisions of "NONHSAT009421"

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sequence = <dnaseq>TTCCAGAGAGACTCTGAGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTGAGGACCTTGATAAAAAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCTGAAATGGTGGTAGCCCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTTATTGAATGATAGAGGTCAGGAACTTTTGCAAATGCATTTCTTTTTATTCGCTGTTGCTTCCAATTAACTGAGTAGGCGTTTTATCTTGTAATTAGTATCTTCATTTCCTGTCTAGAGCTTCATTATCAGTGCAGCAAATTCACCCCCAGTAATAGCTTCTAGTACTTAATGATGCCATTATTCTTAATGATACTGTTTTTAGCTACAAAAGGAGTAATTACAGTTCACTTCTGCAGAAAATGGAAGAGAAAAATGTTTTGATTTCTCCTGTCGTTTTGTTTTTAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAGCAATCACTGAAGAAACTGAAGCCTGTGATTGGTGGAGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTCTGGTTGAATGCCATCCAGCAGGAATAAATACTCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAG</dnaseq>|
 
sequence = <dnaseq>TTCCAGAGAGACTCTGAGACTAAGGGTGAAAGTGGTTTAGTGCTAGAAGGAGACAAGGAAATACATCAGATTTTTGAGGACCTTGATAAAAAATTAGCACTAGCCTCCAGGTTTTACATCCCAGAGGGCTGCATTCAAAGATGGGCAGCTGAAATGGTGGTAGCCCTTGATGCTTTACATAGAGAGGGAATTGTGTGCCGCGATTTGAACCCAAACAACATCTTATTGAATGATAGAGGTCAGGAACTTTTGCAAATGCATTTCTTTTTATTCGCTGTTGCTTCCAATTAACTGAGTAGGCGTTTTATCTTGTAATTAGTATCTTCATTTCCTGTCTAGAGCTTCATTATCAGTGCAGCAAATTCACCCCCAGTAATAGCTTCTAGTACTTAATGATGCCATTATTCTTAATGATACTGTTTTTAGCTACAAAAGGAGTAATTACAGTTCACTTCTGCAGAAAATGGAAGAGAAAAATGTTTTGATTTCTCCTGTCGTTTTGTTTTTAGGACACATTCAGCTAACGTATTTTAGCAGGTGGAGTGAGGTTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTACTGTGCCCCAGAGGTTGGAGCAATCACTGAAGAAACTGAAGCCTGTGATTGGTGGAGTTTGGGTGCTGTCCTCTTTGAACTTCTCACTGGCAAGACTCTGGTTGAATGCCATCCAGCAGGAATAAATACTCACACTACTTTGAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG004256]]
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[[Category:Sense]][[Category:NONHSAG004256]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:53, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT009421

Source

NONCODE4.0

Same with

,

Classification

sense

Length

778 nt

Genomic location

chr1+:213415403..213436159

Exon number

3

Exons

213415403..213416001,213434901..213434983,213436064..213436159

Genome context

Sequence
000001 TTCCAGAGAG ACTCTGAGAC TAAGGGTGAA AGTGGTTTAG TGCTAGAAGG AGACAAGGAA ATACATCAGA TTTTTGAGGA 000080
000081 CCTTGATAAA AAATTAGCAC TAGCCTCCAG GTTTTACATC CCAGAGGGCT GCATTCAAAG ATGGGCAGCT GAAATGGTGG 000160
000161 TAGCCCTTGA TGCTTTACAT AGAGAGGGAA TTGTGTGCCG CGATTTGAAC CCAAACAACA TCTTATTGAA TGATAGAGGT 000240
000241 CAGGAACTTT TGCAAATGCA TTTCTTTTTA TTCGCTGTTG CTTCCAATTA ACTGAGTAGG CGTTTTATCT TGTAATTAGT 000320
000321 ATCTTCATTT CCTGTCTAGA GCTTCATTAT CAGTGCAGCA AATTCACCCC CAGTAATAGC TTCTAGTACT TAATGATGCC 000400
000401 ATTATTCTTA ATGATACTGT TTTTAGCTAC AAAAGGAGTA ATTACAGTTC ACTTCTGCAG AAAATGGAAG AGAAAAATGT 000480
000481 TTTGATTTCT CCTGTCGTTT TGTTTTTAGG ACACATTCAG CTAACGTATT TTAGCAGGTG GAGTGAGGTT GAAGATTCCT 000560
000561 GTGACAGCGA TGCCATAGAG AGAATGTACT GTGCCCCAGA GGTTGGAGCA ATCACTGAAG AAACTGAAGC CTGTGATTGG 000640
000641 TGGAGTTTGG GTGCTGTCCT CTTTGAACTT CTCACTGGCA AGACTCTGGT TGAATGCCAT CCAGCAGGAA TAAATACTCA 000720
000721 CACTACTTTG AACATGCCAG AATGTGTCTC TGAAGAGGCT CGCTCACTCA TTCAACAG
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Predicted Small Protein

Name NONHSAT009421_smProtein_392:484
Length 31
Molecular weight 3687.707
Aromaticity 0.166666666667
Instability index 45.22
Isoelectric point 11.1721801758
Runs 6
Runs residual 0.00225225225225
Runs probability 0.0304863687217
Amino acid sequence MMPLFLMILFLATKGVITVHFCRKWKRKMF
Secondary structure LLHHHHHHHHHHHLLLEEHHHHHHHHHHLL
PRMN HHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo i?????????????????????????????