Difference between revisions of "NONHSAT010321"
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sequence = <dnaseq>AACCTCATAGGTGGTTTGGGATGTCTTTTGGCTGTGCTTAAAAATTTCCAACAGATTTGCTACACATCTTAGGATAAATATGTTTCCTGTGAATTGTGATGATTTCTTACAGTACATTTGCAAGCATGTGTATGCATCTGCAGGAAACATAGCCTGGCTCTGTGAAGGAATACTGCTGTGACCGCAAAACTGTTTCTGTAGAATTTTCTCCGGTGTGGTCATCCTGCCTTCAGAGGTTTCTCCAGGACGTCACCTGTATGAGGTACACAGTGTGATGACACACTCTGTGCTTTTCCTACTTGTGTCCACGGCTCAAGCCTGGAAGAAGCCTTAGGACGTGGGGGAAATGTCTAACGTGGAGTCCACCTGCTGAGCAGGACCGGGTGTGAAGGAAGAAGCTTTGTTCTGATTCCTCATGGCCCAGCCACCCCTCGCCTGAGCTGAGCCTGGCCACAGGGCCCGCCTGCAGGAAGGGCTGGCCCATGGCTTCACACTGGGCTCAGGCTGCGCTAAGAGCCCCGGGTGAGGACCTCCAAGCCCAGGAAGCCTCAGTTGGCCAAAGTGCTAGATGCGTGTGGTCTGCTTTCATCCCCGCTTCCCTCAGAGCTTGCATTTTCCAAATTCAAGAGAGGCTCCACCTTCAAGAAGACCGGCCTGTCCCTGTTATTTATGTGTCCCCCTACCATATCTCCCTTTGTTCTGCAGAGCGGCCATACCTGCCAGCAGCCTGCTCTCCCGGCCATGCTGCGGTTCACAAAAGTCCAGCATTTGGCTAGCTTCCTGGGGGAATGAATCTTTCAGAGCCAAACTAATGCTATGCATGCAGCTTATGATTTTTTTTTTTTTGTCTTCAACAAAGTGAATACTTACTTTTTTTTTGCTCTTT</dnaseq>| | sequence = <dnaseq>AACCTCATAGGTGGTTTGGGATGTCTTTTGGCTGTGCTTAAAAATTTCCAACAGATTTGCTACACATCTTAGGATAAATATGTTTCCTGTGAATTGTGATGATTTCTTACAGTACATTTGCAAGCATGTGTATGCATCTGCAGGAAACATAGCCTGGCTCTGTGAAGGAATACTGCTGTGACCGCAAAACTGTTTCTGTAGAATTTTCTCCGGTGTGGTCATCCTGCCTTCAGAGGTTTCTCCAGGACGTCACCTGTATGAGGTACACAGTGTGATGACACACTCTGTGCTTTTCCTACTTGTGTCCACGGCTCAAGCCTGGAAGAAGCCTTAGGACGTGGGGGAAATGTCTAACGTGGAGTCCACCTGCTGAGCAGGACCGGGTGTGAAGGAAGAAGCTTTGTTCTGATTCCTCATGGCCCAGCCACCCCTCGCCTGAGCTGAGCCTGGCCACAGGGCCCGCCTGCAGGAAGGGCTGGCCCATGGCTTCACACTGGGCTCAGGCTGCGCTAAGAGCCCCGGGTGAGGACCTCCAAGCCCAGGAAGCCTCAGTTGGCCAAAGTGCTAGATGCGTGTGGTCTGCTTTCATCCCCGCTTCCCTCAGAGCTTGCATTTTCCAAATTCAAGAGAGGCTCCACCTTCAAGAAGACCGGCCTGTCCCTGTTATTTATGTGTCCCCCTACCATATCTCCCTTTGTTCTGCAGAGCGGCCATACCTGCCAGCAGCCTGCTCTCCCGGCCATGCTGCGGTTCACAAAAGTCCAGCATTTGGCTAGCTTCCTGGGGGAATGAATCTTTCAGAGCCAAACTAATGCTATGCATGCAGCTTATGATTTTTTTTTTTTTGTCTTCAACAAAGTGAATACTTACTTTTTTTTTGCTCTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG004693]] | + | [[Category:Intergenic]][[Category:NONHSAG004693]][[Category:Transcripts]] |
Latest revision as of 19:57, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT010321 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
886 nt |
| Genomic location |
chr1-:235093089..235099746 |
| Exon number |
4 |
| Exons |
235093089..235093268,235093426..235093825,235095588..235095663,235099514..235099746 |
| Genome context |
|
| Sequence |
000001 AACCTCATAG GTGGTTTGGG ATGTCTTTTG GCTGTGCTTA AAAATTTCCA ACAGATTTGC TACACATCTT AGGATAAATA 000080
000081 TGTTTCCTGT GAATTGTGAT GATTTCTTAC AGTACATTTG CAAGCATGTG TATGCATCTG CAGGAAACAT AGCCTGGCTC 000160 000161 TGTGAAGGAA TACTGCTGTG ACCGCAAAAC TGTTTCTGTA GAATTTTCTC CGGTGTGGTC ATCCTGCCTT CAGAGGTTTC 000240 000241 TCCAGGACGT CACCTGTATG AGGTACACAG TGTGATGACA CACTCTGTGC TTTTCCTACT TGTGTCCACG GCTCAAGCCT 000320 000321 GGAAGAAGCC TTAGGACGTG GGGGAAATGT CTAACGTGGA GTCCACCTGC TGAGCAGGAC CGGGTGTGAA GGAAGAAGCT 000400 000401 TTGTTCTGAT TCCTCATGGC CCAGCCACCC CTCGCCTGAG CTGAGCCTGG CCACAGGGCC CGCCTGCAGG AAGGGCTGGC 000480 000481 CCATGGCTTC ACACTGGGCT CAGGCTGCGC TAAGAGCCCC GGGTGAGGAC CTCCAAGCCC AGGAAGCCTC AGTTGGCCAA 000560 000561 AGTGCTAGAT GCGTGTGGTC TGCTTTCATC CCCGCTTCCC TCAGAGCTTG CATTTTCCAA ATTCAAGAGA GGCTCCACCT 000640 000641 TCAAGAAGAC CGGCCTGTCC CTGTTATTTA TGTGTCCCCC TACCATATCT CCCTTTGTTC TGCAGAGCGG CCATACCTGC 000720 000721 CAGCAGCCTG CTCTCCCGGC CATGCTGCGG TTCACAAAAG TCCAGCATTT GGCTAGCTTC CTGGGGGAAT GAATCTTTCA 000800 000801 GAGCCAAACT AATGCTATGC ATGCAGCTTA TGATTTTTTT TTTTTTGTCT TCAACAAAGT GAATACTTAC TTTTTTTTTG 000880 000881 CTCTTT |
Predicted Small Protein
| Name | NONHSAT010321_smProtein_482:775 |
| Length | 98 |
| Molecular weight | 10522.8924 |
| Aromaticity | 0.0824742268041 |
| Instability index | 81.7175257732 |
| Isoelectric point | 6.94561767578 |
| Runs | 13 |
| Runs residual | 0.00248186330661 |
| Runs probability | 0.0388827741769 |
| Amino acid sequence | MASHWAQAALRAPGEDLQAQEASVGQSARCVWSAFIPASLRACIFQIQERLHLQEDRPVP VIYVSPYHISLCSAERPYLPAACSPGHAAVHKSPAFG |
| Secondary structure | LLHHHHHHHHHLLLLLHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL EEEELLLEEEELLLLLLLLLLLLLLLLLEEELLLLLL |
| PRMN | - |
| PiMo | - |
