Difference between revisions of "NONHSAT011895"
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sequence = <dnaseq>AGAATGGCTCTCGCTCACTGCGCGGTGCCAGCATGTGTCATGTCCCGGCTGTGTTTCTGGGGCCTATGGCCCCTGCTCACGTGGCAACTATTGTGGCTACTAGTCAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGATCTGCTCCAGCTGACCTCTAACCCCCGGGGGCCGCCTGAGCCCTGGTCTTCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCCCCTATTGCCCCAGCAGATCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCCTCGCAGATGTCAGCCCCACCCCAGGAATCAACTGAAAATTTGGTTCCATTCCTGGACACGGATTCAGCTGGAGAGCTGCCCCTAGGGCCAGGGCAGTTCTCAGTTGCACACCAGGATTTCAATGACAAGCTGACTCTGCAAGAAAGGCTCCCAGAGGTGGTTCCAATGCTGGACAGGGATCAGAACCAGACCCTAGTTCAGCCTCCTCGCCTCAAAAGAACCTGAAGAAAGATCTAGCTCAGCATTGGAGCATTGCTGATATTGTTGGAATTCCACAGCAATTATCCAAACCAC</dnaseq>| | sequence = <dnaseq>AGAATGGCTCTCGCTCACTGCGCGGTGCCAGCATGTGTCATGTCCCGGCTGTGTTTCTGGGGCCTATGGCCCCTGCTCACGTGGCAACTATTGTGGCTACTAGTCAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGATCTGCTCCAGCTGACCTCTAACCCCCGGGGGCCGCCTGAGCCCTGGTCTTCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCCCCTATTGCCCCAGCAGATCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCCTCGCAGATGTCAGCCCCACCCCAGGAATCAACTGAAAATTTGGTTCCATTCCTGGACACGGATTCAGCTGGAGAGCTGCCCCTAGGGCCAGGGCAGTTCTCAGTTGCACACCAGGATTTCAATGACAAGCTGACTCTGCAAGAAAGGCTCCCAGAGGTGGTTCCAATGCTGGACAGGGATCAGAACCAGACCCTAGTTCAGCCTCCTCGCCTCAAAAGAACCTGAAGAAAGATCTAGCTCAGCATTGGAGCATTGCTGATATTGTTGGAATTCCACAGCAATTATCCAAACCAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG005461]] | + | [[Category:Intergenic]][[Category:NONHSAG005461]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:05, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT011895 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
572 nt |
| Genomic location |
chr10-:27540033..27540724 |
| Exon number |
2 |
| Exons |
27540033..27540109,27540230..27540724 |
| Genome context |
|
| Sequence |
000001 AGAATGGCTC TCGCTCACTG CGCGGTGCCA GCATGTGTCA TGTCCCGGCT GTGTTTCTGG GGCCTATGGC CCCTGCTCAC 000080
000081 GTGGCAACTA TTGTGGCTAC TAGTCAAGGA GGCTCAGCCT CTGGAGTGGG TCAAGGATCT GCTCCAGCTG ACCTCTAACC 000160 000161 CCCGGGGGCC GCCTGAGCCC TGGTCTTCCG CTCCTCCCAT CTCCCATGGG AATCTCCCCA TGCCCCTATT GCCCCAGCAG 000240 000241 ATCCGGGGGA CTTTGATTAC CTGGGGCCCT CTGCTTCCTC GCAGATGTCA GCCCCACCCC AGGAATCAAC TGAAAATTTG 000320 000321 GTTCCATTCC TGGACACGGA TTCAGCTGGA GAGCTGCCCC TAGGGCCAGG GCAGTTCTCA GTTGCACACC AGGATTTCAA 000400 000401 TGACAAGCTG ACTCTGCAAG AAAGGCTCCC AGAGGTGGTT CCAATGCTGG ACAGGGATCA GAACCAGACC CTAGTTCAGC 000480 000481 CTCCTCGCCT CAAAAGAACC TGAAGAAAGA TCTAGCTCAG CATTGGAGCA TTGCTGATAT TGTTGGAATT CCACAGCAAT 000560 000561 TATCCAAACC AC |
Predicted Small Protein
| Name | NONHSAT011895_smProtein_284:502 |
| Length | 73 |
| Molecular weight | 8054.9461 |
| Aromaticity | 0.0416666666667 |
| Instability index | 56.0986111111 |
| Isoelectric point | 4.49884033203 |
| Runs | 8 |
| Runs residual | 0.0298053527981 |
| Runs probability | 0.0349430312666 |
| Amino acid sequence | MSAPPQESTENLVPFLDTDSAGELPLGPGQFSVAHQDFNDKLTLQERLPEVVPMLDRDQN QTLVQPPRLKRT |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLEEHHHHLLLLLLLLLLLLL LEEELLLLLLLL |
| PRMN | - |
| PiMo | - |
