Difference between revisions of "NONHSAT013232"

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sequence = <dnaseq>AGGCTAGGCGTGGACCCAACTGGCGAGGCTGCTGGGGTTGCAGCGGGACAGTTGGGGCGGCCCCGCAGGCCCAGGTTTTTGAAAATAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTTGAAGAGCCTTCAGAAAGTGGCAGTGATCCCAGCATGTGGACAGCCAGAGGCCCCTTCAGAAGAGACAGGTGGAGCAGTGAGGATGAGGAGGCTGCAGGGCCATCACAGGCTCTCTCCCCTCTACTTTCTGTTCAACATCATGGATATAGTGGCCCAAATGAGAGAACAACGTTCTGGCATGGTTCAAACGAAGGAGCAGTATCACTTTTGTTACGATATTGTGCTTGAAGTTCTTCGGAAACTTCTGACTTTGGATTAAGAAAGACTTCTGTTGCCTCTCACTTGAAATTACCAAGTGGGTTTGCACCTCCTCATAAAGAACATGTTTGCACTGTGCTGAAGGGCTTTGCTATGCATACAATCTGCTTTCTTGGTTTATCAGTTTATTTTCTTTCTAAAAGCTCCCTGAAGGGCAATATCATTTGGCTTGGGGTGATCAGTGTTTACTTATTGATCTTGCTAGACAATATCAAAATAACTTCCCACATTTTCCAGTGAAACAGATGTTACATAAAACGATTGCAGCTTGGCTATTTGGTTGAAGGGATTACAGAGCCCAATAAAGGATTTAAAATATATTCATTAAGATTTTATTTGGAAAGGTGGCTGGAGAGAGCTGAGGATTTCCAGGACTTTGTAAGTTCTTATTCTGGGAGAACATAAGGCCAATAATCATGACCTCTTCCAGGCATTTTTAAGACAGATGTCTATTCATGTTCTTTAGCTAGAGCCTGTACTTTTTGCTGGCATTTGAATAACCCAGTTTAAAAAGAGTCCAGTTAGGGTGGACTAACTTTGGACACAAATTGGCTTCCATTTCCTACATTTTCATACTGCTGCCTTCCTACAGCTGCTAGACCAAGACCTGTTGGTCTGGGAAGCATTTCATGGATAGGGAGAGCTCCTCTCGGTGAACAGTCCAAAACTAAAATAGATGTTTATATAGAAAGCCCAAGAGGAGACTTTTGCCATGCCTGAGTTCTTTCCTATCCCACCCTAACACTTAACATATTACTTAGTCTGCTTTGTTAAAAGCAAGTATTACCTTTAACTTGCCTCTTACTCTTTGCCCTTTAGCTAACTAATAAAGTTTGATATAGGCATTATTATATAATTCTGAGTCATTCATGGTATCTCTCATGTTTGATGTATTTTTCAAACTAAGATCTATGATAGTTTTTTTTCCAGAGTTCCATTAAATCATTTATTTCCTTTACTTTCTCACCTCTGTTGAAACATTTAGAAACTGGATTTGGGAACCCAATTTTGGAAAACCAGATTCATAGTCATGAAAATGGAAACTTCCATATTCTGTTTTTGAAAAGATGTGGCCATTATTACAGTAATTTTATTATAGGACTTTGCCTCGTACAATTAATAGTGATATTTTGGACAAGGAGTTCTGGTGACAAGCTATACCTAATTATAAGCTATAAAACAATAGATATGAGTGTTTGTACAGTTTAACTCAATGGAGATCAGAATATTCTATGTATTGAGAAAATGTTTAATATCAATCTATAAATCTTGAATTTCTAAGAGGCTTATTTTGTTCTTTTGGCTGAATGAGTATATTTGAATTGGTTGAATAATTAATAATTCTCATTGTAAAAATAATTATATGCCAAAAATATATTTGATGTTAAATCAAATAGATGATTCTGTTTACATTGTTCATATGAATAATAATCTGTGTTAATTTCATTTTGATAATTGGCCTTTAATATTTGTATCTCTAATTTTATTTTCTCTCTGTTACTGTAAAATAATAGCTATAATGTATAACAATTTTCTTCAGAAGAATTCTATGCtattattaaaataaaatatttaCTGTGTA</dnaseq>|
 
sequence = <dnaseq>AGGCTAGGCGTGGACCCAACTGGCGAGGCTGCTGGGGTTGCAGCGGGACAGTTGGGGCGGCCCCGCAGGCCCAGGTTTTTGAAAATAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTTGAAGAGCCTTCAGAAAGTGGCAGTGATCCCAGCATGTGGACAGCCAGAGGCCCCTTCAGAAGAGACAGGTGGAGCAGTGAGGATGAGGAGGCTGCAGGGCCATCACAGGCTCTCTCCCCTCTACTTTCTGTTCAACATCATGGATATAGTGGCCCAAATGAGAGAACAACGTTCTGGCATGGTTCAAACGAAGGAGCAGTATCACTTTTGTTACGATATTGTGCTTGAAGTTCTTCGGAAACTTCTGACTTTGGATTAAGAAAGACTTCTGTTGCCTCTCACTTGAAATTACCAAGTGGGTTTGCACCTCCTCATAAAGAACATGTTTGCACTGTGCTGAAGGGCTTTGCTATGCATACAATCTGCTTTCTTGGTTTATCAGTTTATTTTCTTTCTAAAAGCTCCCTGAAGGGCAATATCATTTGGCTTGGGGTGATCAGTGTTTACTTATTGATCTTGCTAGACAATATCAAAATAACTTCCCACATTTTCCAGTGAAACAGATGTTACATAAAACGATTGCAGCTTGGCTATTTGGTTGAAGGGATTACAGAGCCCAATAAAGGATTTAAAATATATTCATTAAGATTTTATTTGGAAAGGTGGCTGGAGAGAGCTGAGGATTTCCAGGACTTTGTAAGTTCTTATTCTGGGAGAACATAAGGCCAATAATCATGACCTCTTCCAGGCATTTTTAAGACAGATGTCTATTCATGTTCTTTAGCTAGAGCCTGTACTTTTTGCTGGCATTTGAATAACCCAGTTTAAAAAGAGTCCAGTTAGGGTGGACTAACTTTGGACACAAATTGGCTTCCATTTCCTACATTTTCATACTGCTGCCTTCCTACAGCTGCTAGACCAAGACCTGTTGGTCTGGGAAGCATTTCATGGATAGGGAGAGCTCCTCTCGGTGAACAGTCCAAAACTAAAATAGATGTTTATATAGAAAGCCCAAGAGGAGACTTTTGCCATGCCTGAGTTCTTTCCTATCCCACCCTAACACTTAACATATTACTTAGTCTGCTTTGTTAAAAGCAAGTATTACCTTTAACTTGCCTCTTACTCTTTGCCCTTTAGCTAACTAATAAAGTTTGATATAGGCATTATTATATAATTCTGAGTCATTCATGGTATCTCTCATGTTTGATGTATTTTTCAAACTAAGATCTATGATAGTTTTTTTTCCAGAGTTCCATTAAATCATTTATTTCCTTTACTTTCTCACCTCTGTTGAAACATTTAGAAACTGGATTTGGGAACCCAATTTTGGAAAACCAGATTCATAGTCATGAAAATGGAAACTTCCATATTCTGTTTTTGAAAAGATGTGGCCATTATTACAGTAATTTTATTATAGGACTTTGCCTCGTACAATTAATAGTGATATTTTGGACAAGGAGTTCTGGTGACAAGCTATACCTAATTATAAGCTATAAAACAATAGATATGAGTGTTTGTACAGTTTAACTCAATGGAGATCAGAATATTCTATGTATTGAGAAAATGTTTAATATCAATCTATAAATCTTGAATTTCTAAGAGGCTTATTTTGTTCTTTTGGCTGAATGAGTATATTTGAATTGGTTGAATAATTAATAATTCTCATTGTAAAAATAATTATATGCCAAAAATATATTTGATGTTAAATCAAATAGATGATTCTGTTTACATTGTTCATATGAATAATAATCTGTGTTAATTTCATTTTGATAATTGGCCTTTAATATTTGTATCTCTAATTTTATTTTCTCTCTGTTACTGTAAAATAATAGCTATAATGTATAACAATTTTCTTCAGAAGAATTCTATGCtattattaaaataaaatatttaCTGTGTA</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG005831]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:09, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT013232

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1995 nt

Genomic location

chr10-:48737040..48827934

Exon number

5

Exons

48737040..48738686,48739388..48739450,48792687..48792799,48795347..48795444,48827861..48827934

Genome context

Sequence
000001 AGGCTAGGCG TGGACCCAAC TGGCGAGGCT GCTGGGGTTG CAGCGGGACA GTTGGGGCGG CCCCGCAGGC CCAGGTTTTT 000080
000081 GAAAATAAAG TTAATTCAGA GAAGGTAAAA CTTTCTCTTC GGAATTTCCC ACATAATGAT TATGAGGATG TTTTTGAAGA 000160
000161 GCCTTCAGAA AGTGGCAGTG ATCCCAGCAT GTGGACAGCC AGAGGCCCCT TCAGAAGAGA CAGGTGGAGC AGTGAGGATG 000240
000241 AGGAGGCTGC AGGGCCATCA CAGGCTCTCT CCCCTCTACT TTCTGTTCAA CATCATGGAT ATAGTGGCCC AAATGAGAGA 000320
000321 ACAACGTTCT GGCATGGTTC AAACGAAGGA GCAGTATCAC TTTTGTTACG ATATTGTGCT TGAAGTTCTT CGGAAACTTC 000400
000401 TGACTTTGGA TTAAGAAAGA CTTCTGTTGC CTCTCACTTG AAATTACCAA GTGGGTTTGC ACCTCCTCAT AAAGAACATG 000480
000481 TTTGCACTGT GCTGAAGGGC TTTGCTATGC ATACAATCTG CTTTCTTGGT TTATCAGTTT ATTTTCTTTC TAAAAGCTCC 000560
000561 CTGAAGGGCA ATATCATTTG GCTTGGGGTG ATCAGTGTTT ACTTATTGAT CTTGCTAGAC AATATCAAAA TAACTTCCCA 000640
000641 CATTTTCCAG TGAAACAGAT GTTACATAAA ACGATTGCAG CTTGGCTATT TGGTTGAAGG GATTACAGAG CCCAATAAAG 000720
000721 GATTTAAAAT ATATTCATTA AGATTTTATT TGGAAAGGTG GCTGGAGAGA GCTGAGGATT TCCAGGACTT TGTAAGTTCT 000800
000801 TATTCTGGGA GAACATAAGG CCAATAATCA TGACCTCTTC CAGGCATTTT TAAGACAGAT GTCTATTCAT GTTCTTTAGC 000880
000881 TAGAGCCTGT ACTTTTTGCT GGCATTTGAA TAACCCAGTT TAAAAAGAGT CCAGTTAGGG TGGACTAACT TTGGACACAA 000960
000961 ATTGGCTTCC ATTTCCTACA TTTTCATACT GCTGCCTTCC TACAGCTGCT AGACCAAGAC CTGTTGGTCT GGGAAGCATT 001040
001041 TCATGGATAG GGAGAGCTCC TCTCGGTGAA CAGTCCAAAA CTAAAATAGA TGTTTATATA GAAAGCCCAA GAGGAGACTT 001120
001121 TTGCCATGCC TGAGTTCTTT CCTATCCCAC CCTAACACTT AACATATTAC TTAGTCTGCT TTGTTAAAAG CAAGTATTAC 001200
001201 CTTTAACTTG CCTCTTACTC TTTGCCCTTT AGCTAACTAA TAAAGTTTGA TATAGGCATT ATTATATAAT TCTGAGTCAT 001280
001281 TCATGGTATC TCTCATGTTT GATGTATTTT TCAAACTAAG ATCTATGATA GTTTTTTTTC CAGAGTTCCA TTAAATCATT 001360
001361 TATTTCCTTT ACTTTCTCAC CTCTGTTGAA ACATTTAGAA ACTGGATTTG GGAACCCAAT TTTGGAAAAC CAGATTCATA 001440
001441 GTCATGAAAA TGGAAACTTC CATATTCTGT TTTTGAAAAG ATGTGGCCAT TATTACAGTA ATTTTATTAT AGGACTTTGC 001520
001521 CTCGTACAAT TAATAGTGAT ATTTTGGACA AGGAGTTCTG GTGACAAGCT ATACCTAATT ATAAGCTATA AAACAATAGA 001600
001601 TATGAGTGTT TGTACAGTTT AACTCAATGG AGATCAGAAT ATTCTATGTA TTGAGAAAAT GTTTAATATC AATCTATAAA 001680
001681 TCTTGAATTT CTAAGAGGCT TATTTTGTTC TTTTGGCTGA ATGAGTATAT TTGAATTGGT TGAATAATTA ATAATTCTCA 001760
001761 TTGTAAAAAT AATTATATGC CAAAAATATA TTTGATGTTA AATCAAATAG ATGATTCTGT TTACATTGTT CATATGAATA 001840
001841 ATAATCTGTG TTAATTTCAT TTTGATAATT GGCCTTTAAT ATTTGTATCT CTAATTTTAT TTTCTCTCTG TTACTGTAAA 001920
001921 ATAATAGCTA TAATGTATAA CAATTTTCTT CAGAAGAATT CTATGCtatt attaaaataa aatatttaCT GTGTA
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Predicted Small Protein

Name NONHSAT013232_smProtein_188:382
Length 65
Molecular weight 7174.7921
Aromaticity 0.109375
Instability index 54.471875
Isoelectric point 6.24407958984
Runs 9
Runs residual 0.00796875
Runs probability 0.047527920077
Amino acid sequence MWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLLL
RYCA
Secondary structure LLLLLLLLLLLLLLLHHHHLLLLLLLLLLLEEEELLLLLLLLLLEEEEELLLHHHHHHHH
HHLL
PRMN -
PiMo -