Difference between revisions of "NONHSAT015053"
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sequence = <dnaseq>AGCTCTAGGAAGTAGGAAGCCATGGTTGTACCACACGCTCTCCCTTGATTAGACTAGAGATAGATACCTGCCCTAAGGACCTCAAAGCAGATCATCCAAGAGGATGGTTACTCAGAGGAGGAAGGTTGGCTGTGCAGGGCAGTCATCTACAGCCACACCCTCCAGGCCATCATGGCCATCGTCAAGGCCACAGGCAACCTACAGACTGACTTTGCCAACCCCTTCCATACGGATGATGCCAGGCAACAGTTTGCAATGTCTTACACAGTTGTGGGCCAGGGTGCACTCCCTGAGGACCTGTCCAGATGCCACCTGCAAACTGAAGCTGTCCAGCGTCATCCGGAATCTCTGGGCTGCCCATTGGATTTGCTCCATGGGATGCCTGTTTCATCCTGCTTTGGTTACCCACAGGACACCAGCTCCACAGTTTAGCCGCCTTCCACCTGAACGACCTGGAGCCACAGGACACAGAGTGACCATGCCCCCACACAGAAGGTGGAGCTGCAGAGCTGCTTAAAGACGCCCTTCACCTCCAGGGACCTACTCTCTTCAAGATGGCTGATGTGGCAGTCAGCAGTCTGGGCAGCAGTGGACCCACTGCTTTGAGGGCATCACAGCCACCATCTTCTGTGCAGGCTTGAGCATCTGTGGCCTGAGCTGAGGACAAGCTGAATCACACACACCAGAACATGAAGCTGTTTGGCAGCATCTATGTCAAGTGGTCATGGAAACGTCTGTCATCCTCTTCATCAAGAAGAAGGACCTAGGTGAGGAGAAGATCACACGCAGCCCCCACCATCTGCTTCCACAAGTACACAGGGGTCAGCAAGTCTGACGAGGCTGCCAGCTACATCAGAGTAAGTGAGAGGGCCTGAATAGCGCAAGAACACCAGGGAGATCCATGCACAAGTCACCTATGCTGTCACCG</dnaseq>| | sequence = <dnaseq>AGCTCTAGGAAGTAGGAAGCCATGGTTGTACCACACGCTCTCCCTTGATTAGACTAGAGATAGATACCTGCCCTAAGGACCTCAAAGCAGATCATCCAAGAGGATGGTTACTCAGAGGAGGAAGGTTGGCTGTGCAGGGCAGTCATCTACAGCCACACCCTCCAGGCCATCATGGCCATCGTCAAGGCCACAGGCAACCTACAGACTGACTTTGCCAACCCCTTCCATACGGATGATGCCAGGCAACAGTTTGCAATGTCTTACACAGTTGTGGGCCAGGGTGCACTCCCTGAGGACCTGTCCAGATGCCACCTGCAAACTGAAGCTGTCCAGCGTCATCCGGAATCTCTGGGCTGCCCATTGGATTTGCTCCATGGGATGCCTGTTTCATCCTGCTTTGGTTACCCACAGGACACCAGCTCCACAGTTTAGCCGCCTTCCACCTGAACGACCTGGAGCCACAGGACACAGAGTGACCATGCCCCCACACAGAAGGTGGAGCTGCAGAGCTGCTTAAAGACGCCCTTCACCTCCAGGGACCTACTCTCTTCAAGATGGCTGATGTGGCAGTCAGCAGTCTGGGCAGCAGTGGACCCACTGCTTTGAGGGCATCACAGCCACCATCTTCTGTGCAGGCTTGAGCATCTGTGGCCTGAGCTGAGGACAAGCTGAATCACACACACCAGAACATGAAGCTGTTTGGCAGCATCTATGTCAAGTGGTCATGGAAACGTCTGTCATCCTCTTCATCAAGAAGAAGGACCTAGGTGAGGAGAAGATCACACGCAGCCCCCACCATCTGCTTCCACAAGTACACAGGGGTCAGCAAGTCTGACGAGGCTGCCAGCTACATCAGAGTAAGTGAGAGGGCCTGAATAGCGCAAGAACACCAGGGAGATCCATGCACAAGTCACCTATGCTGTCACCG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG006307]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG006307]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:13, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT015053 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
928 nt |
| Genomic location |
chr10-:79828458..79829385 |
| Exon number |
1 |
| Exons |
79828458..79829385 |
| Genome context |
|
| Sequence |
000001 AGCTCTAGGA AGTAGGAAGC CATGGTTGTA CCACACGCTC TCCCTTGATT AGACTAGAGA TAGATACCTG CCCTAAGGAC 000080
000081 CTCAAAGCAG ATCATCCAAG AGGATGGTTA CTCAGAGGAG GAAGGTTGGC TGTGCAGGGC AGTCATCTAC AGCCACACCC 000160 000161 TCCAGGCCAT CATGGCCATC GTCAAGGCCA CAGGCAACCT ACAGACTGAC TTTGCCAACC CCTTCCATAC GGATGATGCC 000240 000241 AGGCAACAGT TTGCAATGTC TTACACAGTT GTGGGCCAGG GTGCACTCCC TGAGGACCTG TCCAGATGCC ACCTGCAAAC 000320 000321 TGAAGCTGTC CAGCGTCATC CGGAATCTCT GGGCTGCCCA TTGGATTTGC TCCATGGGAT GCCTGTTTCA TCCTGCTTTG 000400 000401 GTTACCCACA GGACACCAGC TCCACAGTTT AGCCGCCTTC CACCTGAACG ACCTGGAGCC ACAGGACACA GAGTGACCAT 000480 000481 GCCCCCACAC AGAAGGTGGA GCTGCAGAGC TGCTTAAAGA CGCCCTTCAC CTCCAGGGAC CTACTCTCTT CAAGATGGCT 000560 000561 GATGTGGCAG TCAGCAGTCT GGGCAGCAGT GGACCCACTG CTTTGAGGGC ATCACAGCCA CCATCTTCTG TGCAGGCTTG 000640 000641 AGCATCTGTG GCCTGAGCTG AGGACAAGCT GAATCACACA CACCAGAACA TGAAGCTGTT TGGCAGCATC TATGTCAAGT 000720 000721 GGTCATGGAA ACGTCTGTCA TCCTCTTCAT CAAGAAGAAG GACCTAGGTG AGGAGAAGAT CACACGCAGC CCCCACCATC 000800 000801 TGCTTCCACA AGTACACAGG GGTCAGCAAG TCTGACGAGG CTGCCAGCTA CATCAGAGTA AGTGAGAGGG CCTGAATAGC 000880 000881 GCAAGAACAC CAGGGAGATC CATGCACAAG TCACCTATGC TGTCACCG |
Predicted Small Protein
| Name | NONHSAT015053_smProtein_554:640 |
| Length | 29 |
| Molecular weight | 2671.9337 |
| Aromaticity | 0.0 |
| Instability index | 66.0464285714 |
| Isoelectric point | 5.58770751953 |
| Runs | 5 |
| Runs residual | 0.0246478873239 |
| Runs probability | 0.044850733086 |
| Amino acid sequence | MADVAVSSLGSSGPTALRASQPPSSVQA |
| Secondary structure | LLLEEELLLLLLLHHHLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
