Difference between revisions of "NONHSAT015607"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(2 intermediate revisions by 2 users not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>GCGATTGACCGAGGCCTGGCTTTTGAACTTGTCTATAGCCCTGCTATCAAAGACTCCACAATGAGAAGGTATACAATTTCCAGTGCCCTCAATTTGATGCAAATCTGCAAAGGAAAGAATGTAATTATATCTAGTGCTGCAGAAAGGCCTTTAGAAATAAGAGGGCCATATGACGTGGCAAATCTAGGCTTGCTGTTTGGGCTCTCTGAAAGTGACGCCAAGGCTGCGGTGTCCACCAACTGCCGAGCAGCGCTTCTCCATGGAGAAACTAGAAAAACTGCTTTTGGAATTATCTCTACAGTGAAGAAACCTCGGCCATCAGAAGGAGATGAAGATTGTCTTCCAGCTTCCAAGAAAGCCAAGTggtctcactctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaacctttgcctcttgggctcaagccatcctcccacctcagcctcccaagaactagaattcaacaaagacaacttttgatctctcatcagagagatcatactcccaagaacaggctttgacccttctttaaaagaggattgtcctgggctgatgagagtcactttacctgaagatacctgggaagttttgtctcctctgaggttggcccatggccagtgactgatgcaggacattacagcctggcccactggcctcggtggtacaatttatgctcctgagcaccccatgggattacgctgtgtgtggatttctcctgaaaccacatatttgcctcttctgccctgttctgttttttctcattcccttatagaggactctcagtaagtcacttacacaagaatcctaatttgaaatgctgcttccaggagacctgacttaGAAAATTGGACAAATAAAGTTGATTTTTTTAAATGTCCAGTAACATGAAGATGCTGAACTTTCCTAGTCATTTAGGGGGAAATCACCACAAATATATCTGGCTGATCAGGTTGAAAGTTAAAAGAAAAAAAGATTTATAAAGTGGGTATTTTCAAGATGGTGTGGAGGGAGATACAATTTGATGCAAGTCTTATACTTTTGATGTCAATTTATTCTTCAGAAATAACTGGTTAATTATAAAGGGTGGatggataaggatattcactgcaacaatgtcttaaatgtgaaaatggaaacaacctaaatacccaataataacaggattaaataattcattgtacattaaaagaatactgtctataaagatgtctagaataagTTGTTCAGTTGAAGTTGTAAAGCTAAATACACAATACCCATAATGTGCACAGAAATAATCAGAATGTCATGAAACCAGGA</dnaseq>| | sequence = <dnaseq>GCGATTGACCGAGGCCTGGCTTTTGAACTTGTCTATAGCCCTGCTATCAAAGACTCCACAATGAGAAGGTATACAATTTCCAGTGCCCTCAATTTGATGCAAATCTGCAAAGGAAAGAATGTAATTATATCTAGTGCTGCAGAAAGGCCTTTAGAAATAAGAGGGCCATATGACGTGGCAAATCTAGGCTTGCTGTTTGGGCTCTCTGAAAGTGACGCCAAGGCTGCGGTGTCCACCAACTGCCGAGCAGCGCTTCTCCATGGAGAAACTAGAAAAACTGCTTTTGGAATTATCTCTACAGTGAAGAAACCTCGGCCATCAGAAGGAGATGAAGATTGTCTTCCAGCTTCCAAGAAAGCCAAGTggtctcactctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaacctttgcctcttgggctcaagccatcctcccacctcagcctcccaagaactagaattcaacaaagacaacttttgatctctcatcagagagatcatactcccaagaacaggctttgacccttctttaaaagaggattgtcctgggctgatgagagtcactttacctgaagatacctgggaagttttgtctcctctgaggttggcccatggccagtgactgatgcaggacattacagcctggcccactggcctcggtggtacaatttatgctcctgagcaccccatgggattacgctgtgtgtggatttctcctgaaaccacatatttgcctcttctgccctgttctgttttttctcattcccttatagaggactctcagtaagtcacttacacaagaatcctaatttgaaatgctgcttccaggagacctgacttaGAAAATTGGACAAATAAAGTTGATTTTTTTAAATGTCCAGTAACATGAAGATGCTGAACTTTCCTAGTCATTTAGGGGGAAATCACCACAAATATATCTGGCTGATCAGGTTGAAAGTTAAAAGAAAAAAAGATTTATAAAGTGGGTATTTTCAAGATGGTGTGGAGGGAGATACAATTTGATGCAAGTCTTATACTTTTGATGTCAATTTATTCTTCAGAAATAACTGGTTAATTATAAAGGGTGGatggataaggatattcactgcaacaatgtcttaaatgtgaaaatggaaacaacctaaatacccaataataacaggattaaataattcattgtacattaaaagaatactgtctataaagatgtctagaataagTTGTTCAGTTGAAGTTGTAAAGCTAAATACACAATACCCATAATGTGCACAGAAATAATCAGAATGTCATGAAACCAGGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG006509]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:15, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT015607 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1315 nt |
Genomic location |
chr10+:92654532..92665822 |
Exon number |
8 |
Exons |
92654532..92654648,92655211..92655240,92655637..92655674,92656070..92656149,92660327..92660425,92662000..92662101,92662949..92663033,92665059..92665822 |
Genome context |
|
Sequence |
000001 GCGATTGACC GAGGCCTGGC TTTTGAACTT GTCTATAGCC CTGCTATCAA AGACTCCACA ATGAGAAGGT ATACAATTTC 000080
000081 CAGTGCCCTC AATTTGATGC AAATCTGCAA AGGAAAGAAT GTAATTATAT CTAGTGCTGC AGAAAGGCCT TTAGAAATAA 000160 000161 GAGGGCCATA TGACGTGGCA AATCTAGGCT TGCTGTTTGG GCTCTCTGAA AGTGACGCCA AGGCTGCGGT GTCCACCAAC 000240 000241 TGCCGAGCAG CGCTTCTCCA TGGAGAAACT AGAAAAACTG CTTTTGGAAT TATCTCTACA GTGAAGAAAC CTCGGCCATC 000320 000321 AGAAGGAGAT GAAGATTGTC TTCCAGCTTC CAAGAAAGCC AAGTggtctc actctgtcac ccaggctgga gtgcagtggc 000400 000401 acaatctcgg ctcactgcaa cctttgcctc ttgggctcaa gccatcctcc cacctcagcc tcccaagaac tagaattcaa 000480 000481 caaagacaac ttttgatctc tcatcagaga gatcatactc ccaagaacag gctttgaccc ttctttaaaa gaggattgtc 000560 000561 ctgggctgat gagagtcact ttacctgaag atacctggga agttttgtct cctctgaggt tggcccatgg ccagtgactg 000640 000641 atgcaggaca ttacagcctg gcccactggc ctcggtggta caatttatgc tcctgagcac cccatgggat tacgctgtgt 000720 000721 gtggatttct cctgaaacca catatttgcc tcttctgccc tgttctgttt tttctcattc ccttatagag gactctcagt 000800 000801 aagtcactta cacaagaatc ctaatttgaa atgctgcttc caggagacct gacttaGAAA ATTGGACAAA TAAAGTTGAT 000880 000881 TTTTTTAAAT GTCCAGTAAC ATGAAGATGC TGAACTTTCC TAGTCATTTA GGGGGAAATC ACCACAAATA TATCTGGCTG 000960 000961 ATCAGGTTGA AAGTTAAAAG AAAAAAAGAT TTATAAAGTG GGTATTTTCA AGATGGTGTG GAGGGAGATA CAATTTGATG 001040 001041 CAAGTCTTAT ACTTTTGATG TCAATTTATT CTTCAGAAAT AACTGGTTAA TTATAAAGGG TGGatggata aggatattca 001120 001121 ctgcaacaat gtcttaaatg tgaaaatgga aacaacctaa atacccaata ataacaggat taaataattc attgtacatt 001200 001201 aaaagaatac tgtctataaa gatgtctaga ataagTTGTT CAGTTGAAGT TGTAAAGCTA AATACACAAT ACCCATAATG 001280 001281 TGCACAGAAA TAATCAGAAT GTCATGAAAC CAGGA |
Predicted Small Protein
Name | NONHSAT015607_smProtein_686:787 |
Length | 34 |
Molecular weight | 3811.7265 |
Aromaticity | 0.181818181818 |
Instability index | 41.0939393939 |
Isoelectric point | 6.48406982422 |
Runs | 7 |
Runs residual | 0.0279973649539 |
Runs probability | 0.0555934085346 |
Amino acid sequence | MLLSTPWDYAVCGFLLKPHICLFCPVLFFLIPL |
Secondary structure | LLLLLLLHHHHHHHHLLLLLEEELLLLEEEELL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTi |