Difference between revisions of "NONHSAT018318"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGATTTCATTCCGAGCCACCACTCTGAAGTAGTACTTCCTGCCTGGGAGCAGCCCCGTCACTGTGTACTTGTTGCTGAAGACACGCTCGGCTGCCGTGTACCAGGTGGCTGTGCTTGCATCCCGCTTCATGATGATGTAGTGAGCCTCACCGTCCTCCTGCACATCTGGGCTGTGGTTCCAGCCATCTGCCAAGTCCGATGGAAGATAAGATGGGGCAAGTCTCAGGCAGCTGGTgtcttggagtcggaaaactatttctgaagtctgctctgccatttactagcctcgtgacctggggtaagttacttatctgagacttctttcctcaattgcaaaatagagctgacaatgactatttcgtagaaatagtgggtaaagagactggcatgtaGTTACTGTTCAGTAAAAATGAATCCATTCCTTCCTTGGGGGTTTAGAGCTTTATTTTAAAGCTTCCAGCTCTCTTTAAGCAGTCACCCCAATTTTTAATGGATTCATCTCCATTTGTCCCTCCTGCCCCTCCACCCATTTCTACTCTCTCTGCCGACCATACTCTGTATGATAAAGTCTTGCTCTGTGGTGTCAAAGAAATCTTCATGGCCCTAAGGCATGACTTTCCTGTGGTAGGAACTCAAGCGGCACTGGGGAGCTGTGCTTTGGAGAGTGTACAGGGATGGGTCTTGGAGGCCTCTGCCTTCTCTCCATACCTGCCACGCGCACATGGATGTCATAGCGTGCTTCTCCAAACTCATTCTGAAGCAAGATTCGGTACACCCCTGAGTCAGAGCGCTTGGTGCTATTAATGAGGAACTGGGAGTGGTTTTTGCTCTTGGTAATTGTCTCTCGGCCCTTGGTGGGAACGCCATCTTTCTGCCAGATCACGTCAGGTGGTGGTGAGCCCTGAGTAGTGACAGGAGATGGCACAACTGGTCACACAGATGATATTTGGGGGCAGGCCTTCCTCCATTGTCGAGGAGTTTCCTGCCAGGCTGTCGCACTAGGGGTCTGGTGAGGGGCAGAGTCAGAGTCAGAGTCAGAGACTGTGATGGCTACAATAGCCATCTTGGTTATGTGGACAGTGTATGGAGGTCAGGGTCAGGGACAACTCACAGAGAAGGCTGCATGGATGCAGAGGGCTGTCCCAGCGCGAACCACCATGTGACTCTTCAGCCGGGCACTGAGGTCAAACTTGGGTGCAGCTGAGATGGAGGAGACAGAGGTGGAGGCATGGATCTGtctttcaagaagactctgctttaagcctcctcatcaaagccttcccaacctctcctcctttatgcccccactacaggccatacagacatctagctgccctgcaaccctgtgaagcatttatttgttttctcatctgtctccttctactagtacgcaagaccctggaaggcaagtccttgtgtcttgtttctataaccctaacacctcc</dnaseq>| | sequence = <dnaseq>CGATTTCATTCCGAGCCACCACTCTGAAGTAGTACTTCCTGCCTGGGAGCAGCCCCGTCACTGTGTACTTGTTGCTGAAGACACGCTCGGCTGCCGTGTACCAGGTGGCTGTGCTTGCATCCCGCTTCATGATGATGTAGTGAGCCTCACCGTCCTCCTGCACATCTGGGCTGTGGTTCCAGCCATCTGCCAAGTCCGATGGAAGATAAGATGGGGCAAGTCTCAGGCAGCTGGTgtcttggagtcggaaaactatttctgaagtctgctctgccatttactagcctcgtgacctggggtaagttacttatctgagacttctttcctcaattgcaaaatagagctgacaatgactatttcgtagaaatagtgggtaaagagactggcatgtaGTTACTGTTCAGTAAAAATGAATCCATTCCTTCCTTGGGGGTTTAGAGCTTTATTTTAAAGCTTCCAGCTCTCTTTAAGCAGTCACCCCAATTTTTAATGGATTCATCTCCATTTGTCCCTCCTGCCCCTCCACCCATTTCTACTCTCTCTGCCGACCATACTCTGTATGATAAAGTCTTGCTCTGTGGTGTCAAAGAAATCTTCATGGCCCTAAGGCATGACTTTCCTGTGGTAGGAACTCAAGCGGCACTGGGGAGCTGTGCTTTGGAGAGTGTACAGGGATGGGTCTTGGAGGCCTCTGCCTTCTCTCCATACCTGCCACGCGCACATGGATGTCATAGCGTGCTTCTCCAAACTCATTCTGAAGCAAGATTCGGTACACCCCTGAGTCAGAGCGCTTGGTGCTATTAATGAGGAACTGGGAGTGGTTTTTGCTCTTGGTAATTGTCTCTCGGCCCTTGGTGGGAACGCCATCTTTCTGCCAGATCACGTCAGGTGGTGGTGAGCCCTGAGTAGTGACAGGAGATGGCACAACTGGTCACACAGATGATATTTGGGGGCAGGCCTTCCTCCATTGTCGAGGAGTTTCCTGCCAGGCTGTCGCACTAGGGGTCTGGTGAGGGGCAGAGTCAGAGTCAGAGTCAGAGACTGTGATGGCTACAATAGCCATCTTGGTTATGTGGACAGTGTATGGAGGTCAGGGTCAGGGACAACTCACAGAGAAGGCTGCATGGATGCAGAGGGCTGTCCCAGCGCGAACCACCATGTGACTCTTCAGCCGGGCACTGAGGTCAAACTTGGGTGCAGCTGAGATGGAGGAGACAGAGGTGGAGGCATGGATCTGtctttcaagaagactctgctttaagcctcctcatcaaagccttcccaacctctcctcctttatgcccccactacaggccatacagacatctagctgccctgcaaccctgtgaagcatttatttgttttctcatctgtctccttctactagtacgcaagaccctggaaggcaagtccttgtgtcttgtttctataaccctaacacctcc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG007815]][[Category:Transcripts]] |
Latest revision as of 20:28, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1445 nt |
Genomic location |
chr11+:18728515..18730087 |
Exon number |
2 |
Exons |
18728515..18728696,18728825..18730087 |
Genome context |
|
Sequence |
000001 CGATTTCATT CCGAGCCACC ACTCTGAAGT AGTACTTCCT GCCTGGGAGC AGCCCCGTCA CTGTGTACTT GTTGCTGAAG 000080
000081 ACACGCTCGG CTGCCGTGTA CCAGGTGGCT GTGCTTGCAT CCCGCTTCAT GATGATGTAG TGAGCCTCAC CGTCCTCCTG 000160 000161 CACATCTGGG CTGTGGTTCC AGCCATCTGC CAAGTCCGAT GGAAGATAAG ATGGGGCAAG TCTCAGGCAG CTGGTgtctt 000240 000241 ggagtcggaa aactatttct gaagtctgct ctgccattta ctagcctcgt gacctggggt aagttactta tctgagactt 000320 000321 ctttcctcaa ttgcaaaata gagctgacaa tgactatttc gtagaaatag tgggtaaaga gactggcatg taGTTACTGT 000400 000401 TCAGTAAAAA TGAATCCATT CCTTCCTTGG GGGTTTAGAG CTTTATTTTA AAGCTTCCAG CTCTCTTTAA GCAGTCACCC 000480 000481 CAATTTTTAA TGGATTCATC TCCATTTGTC CCTCCTGCCC CTCCACCCAT TTCTACTCTC TCTGCCGACC ATACTCTGTA 000560 000561 TGATAAAGTC TTGCTCTGTG GTGTCAAAGA AATCTTCATG GCCCTAAGGC ATGACTTTCC TGTGGTAGGA ACTCAAGCGG 000640 000641 CACTGGGGAG CTGTGCTTTG GAGAGTGTAC AGGGATGGGT CTTGGAGGCC TCTGCCTTCT CTCCATACCT GCCACGCGCA 000720 000721 CATGGATGTC ATAGCGTGCT TCTCCAAACT CATTCTGAAG CAAGATTCGG TACACCCCTG AGTCAGAGCG CTTGGTGCTA 000800 000801 TTAATGAGGA ACTGGGAGTG GTTTTTGCTC TTGGTAATTG TCTCTCGGCC CTTGGTGGGA ACGCCATCTT TCTGCCAGAT 000880 000881 CACGTCAGGT GGTGGTGAGC CCTGAGTAGT GACAGGAGAT GGCACAACTG GTCACACAGA TGATATTTGG GGGCAGGCCT 000960 000961 TCCTCCATTG TCGAGGAGTT TCCTGCCAGG CTGTCGCACT AGGGGTCTGG TGAGGGGCAG AGTCAGAGTC AGAGTCAGAG 001040 001041 ACTGTGATGG CTACAATAGC CATCTTGGTT ATGTGGACAG TGTATGGAGG TCAGGGTCAG GGACAACTCA CAGAGAAGGC 001120 001121 TGCATGGATG CAGAGGGCTG TCCCAGCGCG AACCACCATG TGACTCTTCA GCCGGGCACT GAGGTCAAAC TTGGGTGCAG 001200 001201 CTGAGATGGA GGAGACAGAG GTGGAGGCAT GGATCTGtct ttcaagaaga ctctgcttta agcctcctca tcaaagcctt 001280 001281 cccaacctct cctcctttat gcccccacta caggccatac agacatctag ctgccctgca accctgtgaa gcatttattt 001360 001361 gttttctcat ctgtctcctt ctactagtac gcaagaccct ggaaggcaag tccttgtgtc ttgtttctat aaccctaaca 001440 001441 cctcc |
Predicted Small Protein
Name | NONHSAT018318_smProtein_1205:1348 |
Length | 48 |
Molecular weight | 5289.1149 |
Aromaticity | 0.063829787234 |
Instability index | 97.6574468085 |
Isoelectric point | 5.54827880859 |
Runs | 6 |
Runs residual | 0.0386170212766 |
Runs probability | 0.0378466701996 |
Amino acid sequence | MEETEVEAWICLSRRLCFKPPHQSLPNLSSFMPPLQAIQTSSCPATL |
Secondary structure | LLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHEELLLLLLLL |
PRMN | - |
PiMo | - |