Difference between revisions of "NONHSAT018874"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>TCCCTTGCACCAAAAACAGAAAGGAAGGCCTATGAAAATCAGACCATGAAGTCTTATTTTTCATTCTTTGGTCTAGTAATTTAATTTCATTTTCCAGATTATTAATGCTGCAGTTTATTATATATTTGATGCTGAATTGCTGAATTTGACTTGTCCAAATGACATCAATCCTGCCTTTATCTCATTGCCAGAAGTAGTGAATATATTGCTTTTTATCCTGGTGAAAGGGAAGATTCAAAGTTGTTTGAAGGAGAGGGGCTGATCTGTGTGGTGGCAGTAGAACATATTCTGATTGATGTCCTCTAACCTTGCAAACTTGCCAGAGCATCCACCTAGTTCAACCCTAGTTCAGTTATCATGGTGGAAACCCATTATGGGCACTCTTAGCAACTATTGTGCCTATATATTAATAAGTCTACTGAATAACAATTAGTTCATCCCCTTACTTCTTCAGCCCTTACTTCCACATTGAAAGAAGTAAAAAGTAGAACTCACCAATTGCTATTTAAGCACATTTGCTAGTTTTGTAAAGTCTATAGACTTCTAAGAGGAATATATGAAACCTCAAGTAAATATATTAAAACATGCACAAAATAAATATATTTATGATATATACTTTTTATTGTAACTATCAAATTTTAATCAAAAAATTTGTAATGCTAGGGAAATCTCAGGTTTTACTAATGGAATTATGAAAAAATATTAATCTTAATACAATTTGTAAAATGCCTTAAAAGTTAGATGTTGAAATGGACTTCCAGGTCCTGTAGCTACTTCTATTGAAATTATCATCATAATGTTTTACAAAATGAGAAAAGTAATACAGTTTCTCTTTCCAGTTGCCCTGAAGCAGACTAACTGATGCTTGTAAAGATGTTTCTCAGCATAAATGGATTGTTAGAGAATGAACTTCAGTTAATTTTGACCTTAAAAAAAAGTCACGTAGATATGTATTTTCATCTGAAACATTTTCAAGAGTCTTGCAAACAAGTCACTCTAAAATAATTTATGACAATGTTTATGTGCTCAATTACATTTTGGTTTTTCAATACATATTCTTACCTTAAGTGAAAGTAGATTGTATCCCTGGTTTTCATTTTTCAGCACATTTTCAAGTTTTCTAAGAGAAGTACAAAATCATAATCTGTCACTACATAACATGTCACTACATGTTCAACATTTGTAAAACTCAATTTATTATAAATCCTGAGTTATTAGTAACTGTTATTTGAAAGCCATTTTAGTAATCATAGAAAGCACTAATATTAAGGAGTAAAAAATCAACAATTAATATCAGAAATAAACCATGAGCTCTTAGAAACTAGTGGGATACCATTAGGCATTCATAAGATATAATAATTCAAAAGTAAAAATTATATGCTTTGTAGCTCAAAAGTGCTTTCACCTATTTTCTCATTTGTGTAGCCTTGAAATAGTGGTAGATGAGTATTTCAAATTCAAGCATCAGATATTTCATAAATACTGCATATGCCTGTGTGTGGAATTATTGATGTTTTGAACCTATAAACAGGATAGAAAGGAAGAGATGGTCAGGAAACAATACTGGAGAAGAAAAAGAGGTAAATGGTAAAAGCAGAAAAAATGATTAGATTATGTTTATTTTAGAATAGATTCATTTAGTGAATATGAATTGAGGAACCTACTTAATGCCAGGCACTATTTGCAGCTCTGGATGTACAGCAATGAACAAAACTTTTAAGTCATGCCCACAAGATAAAGTGACCAACTCATCTCAGTTTGCACAGATGTTCCTGGTTTTAGTACTGAAAGCCCTGCATTCCAGAAACCCCTTAGTCGAGGGCAAATCAAGACGGTTGCTCACCATTATCAGAACCTCACTTTCTGGTAACTGTCATCTTGATTTCCAAATTCATATTAATATTTTTATCTCATTGTTAATGACAATGCAAGTTAGCACTGACCACAAGTAACCAATGGCTAGTATACCTGTTTCTAACTGGGGCAAAGTTATGACAAGAGCAAATTATAGTAATATCAAACTTCCTAGAATTATTTCTAGACAACACTCCTTGGAGTGCAACTGAAGTATCAAAAGTACAACTTGCCCTCAAGGAAGAGTTAGTGTCTGGGAATGTGAACGAACAATCATAACCACCATTTGCAAGACACCTACGTATATCATCTCTAGTTCTTACAAAGCCCTCTAAGGTAGTATCATCATCTCCGTTGCAAGGATAAAGACTTTGAGAGTAAACTCTCCCATACACAATAATGAGAAAGAAAACCCAAGGTAAAAGAAGAGAATTGGAGCTTTCAGATGGCTATAGCAAGTCTTGTATAAGCAATAGCATTTATTTTTCAGAACAGAAAACTATTAATGCTCTCAGTGTATTTTACTTCTTGTGTTCTATTGGATTATATTTTCCTGGAAACTGGCTTCTCTTTGGGGTCACATTTTGGTAATCAATGTTAGTCTTATTCTTGTTCAGTCAAGTTTACTAATGAAATGGATAGGACAGTACCTTTGAAGCACTGACTTGGTTAATGTGGCAATGTTTGAACTATTTTTATATTGACTATTATTGAATTTCGTAGAGGAACTTCAAATTGAAGACGTTATGGATCAGCCAGCATTCAAAGATGAAAATAAATCAAT</dnaseq>| | sequence = <dnaseq>TCCCTTGCACCAAAAACAGAAAGGAAGGCCTATGAAAATCAGACCATGAAGTCTTATTTTTCATTCTTTGGTCTAGTAATTTAATTTCATTTTCCAGATTATTAATGCTGCAGTTTATTATATATTTGATGCTGAATTGCTGAATTTGACTTGTCCAAATGACATCAATCCTGCCTTTATCTCATTGCCAGAAGTAGTGAATATATTGCTTTTTATCCTGGTGAAAGGGAAGATTCAAAGTTGTTTGAAGGAGAGGGGCTGATCTGTGTGGTGGCAGTAGAACATATTCTGATTGATGTCCTCTAACCTTGCAAACTTGCCAGAGCATCCACCTAGTTCAACCCTAGTTCAGTTATCATGGTGGAAACCCATTATGGGCACTCTTAGCAACTATTGTGCCTATATATTAATAAGTCTACTGAATAACAATTAGTTCATCCCCTTACTTCTTCAGCCCTTACTTCCACATTGAAAGAAGTAAAAAGTAGAACTCACCAATTGCTATTTAAGCACATTTGCTAGTTTTGTAAAGTCTATAGACTTCTAAGAGGAATATATGAAACCTCAAGTAAATATATTAAAACATGCACAAAATAAATATATTTATGATATATACTTTTTATTGTAACTATCAAATTTTAATCAAAAAATTTGTAATGCTAGGGAAATCTCAGGTTTTACTAATGGAATTATGAAAAAATATTAATCTTAATACAATTTGTAAAATGCCTTAAAAGTTAGATGTTGAAATGGACTTCCAGGTCCTGTAGCTACTTCTATTGAAATTATCATCATAATGTTTTACAAAATGAGAAAAGTAATACAGTTTCTCTTTCCAGTTGCCCTGAAGCAGACTAACTGATGCTTGTAAAGATGTTTCTCAGCATAAATGGATTGTTAGAGAATGAACTTCAGTTAATTTTGACCTTAAAAAAAAGTCACGTAGATATGTATTTTCATCTGAAACATTTTCAAGAGTCTTGCAAACAAGTCACTCTAAAATAATTTATGACAATGTTTATGTGCTCAATTACATTTTGGTTTTTCAATACATATTCTTACCTTAAGTGAAAGTAGATTGTATCCCTGGTTTTCATTTTTCAGCACATTTTCAAGTTTTCTAAGAGAAGTACAAAATCATAATCTGTCACTACATAACATGTCACTACATGTTCAACATTTGTAAAACTCAATTTATTATAAATCCTGAGTTATTAGTAACTGTTATTTGAAAGCCATTTTAGTAATCATAGAAAGCACTAATATTAAGGAGTAAAAAATCAACAATTAATATCAGAAATAAACCATGAGCTCTTAGAAACTAGTGGGATACCATTAGGCATTCATAAGATATAATAATTCAAAAGTAAAAATTATATGCTTTGTAGCTCAAAAGTGCTTTCACCTATTTTCTCATTTGTGTAGCCTTGAAATAGTGGTAGATGAGTATTTCAAATTCAAGCATCAGATATTTCATAAATACTGCATATGCCTGTGTGTGGAATTATTGATGTTTTGAACCTATAAACAGGATAGAAAGGAAGAGATGGTCAGGAAACAATACTGGAGAAGAAAAAGAGGTAAATGGTAAAAGCAGAAAAAATGATTAGATTATGTTTATTTTAGAATAGATTCATTTAGTGAATATGAATTGAGGAACCTACTTAATGCCAGGCACTATTTGCAGCTCTGGATGTACAGCAATGAACAAAACTTTTAAGTCATGCCCACAAGATAAAGTGACCAACTCATCTCAGTTTGCACAGATGTTCCTGGTTTTAGTACTGAAAGCCCTGCATTCCAGAAACCCCTTAGTCGAGGGCAAATCAAGACGGTTGCTCACCATTATCAGAACCTCACTTTCTGGTAACTGTCATCTTGATTTCCAAATTCATATTAATATTTTTATCTCATTGTTAATGACAATGCAAGTTAGCACTGACCACAAGTAACCAATGGCTAGTATACCTGTTTCTAACTGGGGCAAAGTTATGACAAGAGCAAATTATAGTAATATCAAACTTCCTAGAATTATTTCTAGACAACACTCCTTGGAGTGCAACTGAAGTATCAAAAGTACAACTTGCCCTCAAGGAAGAGTTAGTGTCTGGGAATGTGAACGAACAATCATAACCACCATTTGCAAGACACCTACGTATATCATCTCTAGTTCTTACAAAGCCCTCTAAGGTAGTATCATCATCTCCGTTGCAAGGATAAAGACTTTGAGAGTAAACTCTCCCATACACAATAATGAGAAAGAAAACCCAAGGTAAAAGAAGAGAATTGGAGCTTTCAGATGGCTATAGCAAGTCTTGTATAAGCAATAGCATTTATTTTTCAGAACAGAAAACTATTAATGCTCTCAGTGTATTTTACTTCTTGTGTTCTATTGGATTATATTTTCCTGGAAACTGGCTTCTCTTTGGGGTCACATTTTGGTAATCAATGTTAGTCTTATTCTTGTTCAGTCAAGTTTACTAATGAAATGGATAGGACAGTACCTTTGAAGCACTGACTTGGTTAATGTGGCAATGTTTGAACTATTTTTATATTGACTATTATTGAATTTCGTAGAGGAACTTCAAATTGAAGACGTTATGGATCAGCCAGCATTCAAAGATGAAAATAAATCAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG008096]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:30, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT018874 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2638 nt |
| Genomic location |
chr11-:40128794..40131431 |
| Exon number |
1 |
| Exons |
40128794..40131431 |
| Genome context |
|
| Sequence |
000001 TCCCTTGCAC CAAAAACAGA AAGGAAGGCC TATGAAAATC AGACCATGAA GTCTTATTTT TCATTCTTTG GTCTAGTAAT 000080
000081 TTAATTTCAT TTTCCAGATT ATTAATGCTG CAGTTTATTA TATATTTGAT GCTGAATTGC TGAATTTGAC TTGTCCAAAT 000160 000161 GACATCAATC CTGCCTTTAT CTCATTGCCA GAAGTAGTGA ATATATTGCT TTTTATCCTG GTGAAAGGGA AGATTCAAAG 000240 000241 TTGTTTGAAG GAGAGGGGCT GATCTGTGTG GTGGCAGTAG AACATATTCT GATTGATGTC CTCTAACCTT GCAAACTTGC 000320 000321 CAGAGCATCC ACCTAGTTCA ACCCTAGTTC AGTTATCATG GTGGAAACCC ATTATGGGCA CTCTTAGCAA CTATTGTGCC 000400 000401 TATATATTAA TAAGTCTACT GAATAACAAT TAGTTCATCC CCTTACTTCT TCAGCCCTTA CTTCCACATT GAAAGAAGTA 000480 000481 AAAAGTAGAA CTCACCAATT GCTATTTAAG CACATTTGCT AGTTTTGTAA AGTCTATAGA CTTCTAAGAG GAATATATGA 000560 000561 AACCTCAAGT AAATATATTA AAACATGCAC AAAATAAATA TATTTATGAT ATATACTTTT TATTGTAACT ATCAAATTTT 000640 000641 AATCAAAAAA TTTGTAATGC TAGGGAAATC TCAGGTTTTA CTAATGGAAT TATGAAAAAA TATTAATCTT AATACAATTT 000720 000721 GTAAAATGCC TTAAAAGTTA GATGTTGAAA TGGACTTCCA GGTCCTGTAG CTACTTCTAT TGAAATTATC ATCATAATGT 000800 000801 TTTACAAAAT GAGAAAAGTA ATACAGTTTC TCTTTCCAGT TGCCCTGAAG CAGACTAACT GATGCTTGTA AAGATGTTTC 000880 000881 TCAGCATAAA TGGATTGTTA GAGAATGAAC TTCAGTTAAT TTTGACCTTA AAAAAAAGTC ACGTAGATAT GTATTTTCAT 000960 000961 CTGAAACATT TTCAAGAGTC TTGCAAACAA GTCACTCTAA AATAATTTAT GACAATGTTT ATGTGCTCAA TTACATTTTG 001040 001041 GTTTTTCAAT ACATATTCTT ACCTTAAGTG AAAGTAGATT GTATCCCTGG TTTTCATTTT TCAGCACATT TTCAAGTTTT 001120 001121 CTAAGAGAAG TACAAAATCA TAATCTGTCA CTACATAACA TGTCACTACA TGTTCAACAT TTGTAAAACT CAATTTATTA 001200 001201 TAAATCCTGA GTTATTAGTA ACTGTTATTT GAAAGCCATT TTAGTAATCA TAGAAAGCAC TAATATTAAG GAGTAAAAAA 001280 001281 TCAACAATTA ATATCAGAAA TAAACCATGA GCTCTTAGAA ACTAGTGGGA TACCATTAGG CATTCATAAG ATATAATAAT 001360 001361 TCAAAAGTAA AAATTATATG CTTTGTAGCT CAAAAGTGCT TTCACCTATT TTCTCATTTG TGTAGCCTTG AAATAGTGGT 001440 001441 AGATGAGTAT TTCAAATTCA AGCATCAGAT ATTTCATAAA TACTGCATAT GCCTGTGTGT GGAATTATTG ATGTTTTGAA 001520 001521 CCTATAAACA GGATAGAAAG GAAGAGATGG TCAGGAAACA ATACTGGAGA AGAAAAAGAG GTAAATGGTA AAAGCAGAAA 001600 001601 AAATGATTAG ATTATGTTTA TTTTAGAATA GATTCATTTA GTGAATATGA ATTGAGGAAC CTACTTAATG CCAGGCACTA 001680 001681 TTTGCAGCTC TGGATGTACA GCAATGAACA AAACTTTTAA GTCATGCCCA CAAGATAAAG TGACCAACTC ATCTCAGTTT 001760 001761 GCACAGATGT TCCTGGTTTT AGTACTGAAA GCCCTGCATT CCAGAAACCC CTTAGTCGAG GGCAAATCAA GACGGTTGCT 001840 001841 CACCATTATC AGAACCTCAC TTTCTGGTAA CTGTCATCTT GATTTCCAAA TTCATATTAA TATTTTTATC TCATTGTTAA 001920 001921 TGACAATGCA AGTTAGCACT GACCACAAGT AACCAATGGC TAGTATACCT GTTTCTAACT GGGGCAAAGT TATGACAAGA 002000 002001 GCAAATTATA GTAATATCAA ACTTCCTAGA ATTATTTCTA GACAACACTC CTTGGAGTGC AACTGAAGTA TCAAAAGTAC 002080 002081 AACTTGCCCT CAAGGAAGAG TTAGTGTCTG GGAATGTGAA CGAACAATCA TAACCACCAT TTGCAAGACA CCTACGTATA 002160 002161 TCATCTCTAG TTCTTACAAA GCCCTCTAAG GTAGTATCAT CATCTCCGTT GCAAGGATAA AGACTTTGAG AGTAAACTCT 002240 002241 CCCATACACA ATAATGAGAA AGAAAACCCA AGGTAAAAGA AGAGAATTGG AGCTTTCAGA TGGCTATAGC AAGTCTTGTA 002320 002321 TAAGCAATAG CATTTATTTT TCAGAACAGA AAACTATTAA TGCTCTCAGT GTATTTTACT TCTTGTGTTC TATTGGATTA 002400 002401 TATTTTCCTG GAAACTGGCT TCTCTTTGGG GTCACATTTT GGTAATCAAT GTTAGTCTTA TTCTTGTTCA GTCAAGTTTA 002480 002481 CTAATGAAAT GGATAGGACA GTACCTTTGA AGCACTGACT TGGTTAATGT GGCAATGTTT GAACTATTTT TATATTGACT 002560 002561 ATTATTGAAT TTCGTAGAGG AACTTCAAAT TGAAGACGTT ATGGATCAGC CAGCATTCAA AGATGAAAAT AAATCAAT |
Predicted Small Protein
| Name | NONHSAT018874_smProtein_1667:1951 |
| Length | 95 |
| Molecular weight | 10482.2627 |
| Aromaticity | 0.0531914893617 |
| Instability index | 52.135106383 |
| Isoelectric point | 9.61895751953 |
| Runs | 15 |
| Runs residual | 0.0307585568918 |
| Runs probability | 0.0335983041865 |
| Amino acid sequence | MPGTICSSGCTAMNKTFKSCPQDKVTNSSQFAQMFLVLVLKALHSRNPLVEGKSRRLLTI IRTSLSGNCHLDFQIHINIFISLLMTMQVSTDHK |
| Secondary structure | LLLEEELLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLEEEEE EEEELLLLEEELLEEEHHHHHHHHHHHEEELLLL |
| PRMN | - |
| PiMo | - |
