Difference between revisions of "NONHSAT021359"

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sequence = <dnaseq>ATGAGACAGAATAACAGTAGTACAGAATTTGTTCTCCTGGGCTTTTCTCAGGATCCTGATGTGCAAAATGCGCTATTTGTCATGTTTTTACTGACATACATTGTGACAATGGTGGGGAACCTACTCATTGTGGTGACTATTATTGCCAGCCCTTCCTTGGGCTCCCCAATGTACTTTTTCCTTGCCCACCTGTCATTTATAGATGCTGTGTATTCCACCACCATTTCTCCTGTATTGATTGTAGACTTACTCTGTGACAAAAAGACGATTTCCTTCTGAGCTTGCATGGGACAACTGTTTATAGACCACTTATTTGGTGGTTCTGAGGTCTTCCTTCTGGTGGTGATGGCCTGTGATCGCTGTGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCGACAGGTTTGCATTCTTCTCTTGGTGTTGGCTGTGACTGGAGGTTTTGTGCATCCTGTATTTCAAGTTGTTGTTGTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACATATACCCTTTATTTGGAACTGGCATGCACTGACACCTACTTTATAGGCCTCACTGTGGTTTTCAATGGTGGAGCAATGCGTATGGTCATCCTCACCCTTCTACTAGTCTTCTATGGAGTCATCCTAAACTCCCTTAAAACTTACAGTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCTCCCATTTTACCGTGGTTATCTTGTTTTTTGCTTCCTGTATTTTCATATATGTTAGACCTGTTTCAAATTTTCTGTTGATAAATTCATGACTGTGTTTTATACGGTTATCACACCCATGTTGAATCCTTTTATATGCATGTTGAGAAATTCAGAGATGAGAAATGCTATAGAAAAACTCCTGTGTAAA</dnaseq>|
 
sequence = <dnaseq>ATGAGACAGAATAACAGTAGTACAGAATTTGTTCTCCTGGGCTTTTCTCAGGATCCTGATGTGCAAAATGCGCTATTTGTCATGTTTTTACTGACATACATTGTGACAATGGTGGGGAACCTACTCATTGTGGTGACTATTATTGCCAGCCCTTCCTTGGGCTCCCCAATGTACTTTTTCCTTGCCCACCTGTCATTTATAGATGCTGTGTATTCCACCACCATTTCTCCTGTATTGATTGTAGACTTACTCTGTGACAAAAAGACGATTTCCTTCTGAGCTTGCATGGGACAACTGTTTATAGACCACTTATTTGGTGGTTCTGAGGTCTTCCTTCTGGTGGTGATGGCCTGTGATCGCTGTGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCGACAGGTTTGCATTCTTCTCTTGGTGTTGGCTGTGACTGGAGGTTTTGTGCATCCTGTATTTCAAGTTGTTGTTGTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTGACATATACCCTTTATTTGGAACTGGCATGCACTGACACCTACTTTATAGGCCTCACTGTGGTTTTCAATGGTGGAGCAATGCGTATGGTCATCCTCACCCTTCTACTAGTCTTCTATGGAGTCATCCTAAACTCCCTTAAAACTTACAGTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCTCCCATTTTACCGTGGTTATCTTGTTTTTTGCTTCCTGTATTTTCATATATGTTAGACCTGTTTCAAATTTTCTGTTGATAAATTCATGACTGTGTTTTATACGGTTATCACACCCATGTTGAATCCTTTTATATGCATGTTGAGAAATTCAGAGATGAGAAATGCTATAGAAAAACTCCTGTGTAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG008313]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:32, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT021359

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

906 nt

Genomic location

chr11+:55086036..55086941

Exon number

1

Exons

55086036..55086941

Genome context

Sequence
000001 ATGAGACAGA ATAACAGTAG TACAGAATTT GTTCTCCTGG GCTTTTCTCA GGATCCTGAT GTGCAAAATG CGCTATTTGT 000080
000081 CATGTTTTTA CTGACATACA TTGTGACAAT GGTGGGGAAC CTACTCATTG TGGTGACTAT TATTGCCAGC CCTTCCTTGG 000160
000161 GCTCCCCAAT GTACTTTTTC CTTGCCCACC TGTCATTTAT AGATGCTGTG TATTCCACCA CCATTTCTCC TGTATTGATT 000240
000241 GTAGACTTAC TCTGTGACAA AAAGACGATT TCCTTCTGAG CTTGCATGGG ACAACTGTTT ATAGACCACT TATTTGGTGG 000320
000321 TTCTGAGGTC TTCCTTCTGG TGGTGATGGC CTGTGATCGC TGTGTGGCCA TCTGTAAGCC ACTGCACTAT TTGACCATCA 000400
000401 TGAATCGACA GGTTTGCATT CTTCTCTTGG TGTTGGCTGT GACTGGAGGT TTTGTGCATC CTGTATTTCA AGTTGTTGTT 000480
000481 GTGTACAGTC TCCCTTTCTG TGGCCCCAAT GTCATTGACC ACTTTTTCTG TGACATATAC CCTTTATTTG GAACTGGCAT 000560
000561 GCACTGACAC CTACTTTATA GGCCTCACTG TGGTTTTCAA TGGTGGAGCA ATGCGTATGG TCATCCTCAC CCTTCTACTA 000640
000641 GTCTTCTATG GAGTCATCCT AAACTCCCTT AAAACTTACA GTCAGGAAGG GAGGCATAAA GCCCTGTCTA CCTGCAGCTC 000720
000721 CCATTTTACC GTGGTTATCT TGTTTTTTGC TTCCTGTATT TTCATATATG TTAGACCTGT TTCAAATTTT CTGTTGATAA 000800
000801 ATTCATGACT GTGTTTTATA CGGTTATCAC ACCCATGTTG AATCCTTTTA TATGCATGTT GAGAAATTCA GAGATGAGAA 000880
000881 ATGCTATAGA AAAACTCCTG TGTAAA
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Predicted Small Protein

Name NONHSAT021359_smProtein_851:904
Length 18
Molecular weight 2166.5253
Aromaticity 0.117647058824
Instability index 44.4882352941
Isoelectric point 9.10101318359
Runs 5
Runs residual 0.00735294117647
Runs probability 0.0266560678326
Amino acid sequence MHVEKFRDEKCYRKTPV
Secondary structure LLLEEELLHHHHLLLLL
PRMN -
PiMo -