Difference between revisions of "NONHSAT021792"

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sequence = <dnaseq>CCATGGTTGCACGATTAGGTAGGGGCTCCGGGCGCTTTGCCCACCCCCGAGCTGGAGGGGACTGGCGGGAAGCGGCGGTTGGCTGCAGGGCGCTCCGCCGGGCGTGGGGTGTAGCCGTGTCGGTGAGCGAGCTCTGCTCGAGGCGGAGAGGAGAAACTCGGGAAGCAATTGTGGCTACTCTAAGGCTACTGGTTTCGAGTCAGGCCGTGCGACCTTAGGCAAGTCGCACATTCTCTCCGTGCAGCTGCCTAGCAGTGTGGATTCAGTATCACCGTGTGTGTAAAGCTCTTTCTAAGAATCGTAAGGAACCACCAGCTGCTGCATCCCATGGCCAGGGGTGGCGTCCAGGTGGCAGAGCAGCTAGGAACGCAAGGCCTGAACCTGGGGCCAGACACCCTGCTCTCCCGGCCATGGTCAACGACCCTCCAGTACCTGCCTTACTGTGGGCCCAGGAGGACCGACTGTGATTCCTCCACCACCTCACTCTGCTCCTTCCCTGTTGCCAATGTCTCGCTGACTAAGGGTGGACGTGATCGGGTGCTGATGTATGGACAGCCGTATCGTGTTACCTTAGAGCTTGAGCTGCCAGAGTCCCCTGTGAATCAAGATTTGGGCATGTTCTTGGTCACCATTTCCTGCTACACCAGAGGTGGCCGAATCATCTCCACTTCTTCGCGTTCGGTAAGTGTTG</dnaseq>|
 
sequence = <dnaseq>CCATGGTTGCACGATTAGGTAGGGGCTCCGGGCGCTTTGCCCACCCCCGAGCTGGAGGGGACTGGCGGGAAGCGGCGGTTGGCTGCAGGGCGCTCCGCCGGGCGTGGGGTGTAGCCGTGTCGGTGAGCGAGCTCTGCTCGAGGCGGAGAGGAGAAACTCGGGAAGCAATTGTGGCTACTCTAAGGCTACTGGTTTCGAGTCAGGCCGTGCGACCTTAGGCAAGTCGCACATTCTCTCCGTGCAGCTGCCTAGCAGTGTGGATTCAGTATCACCGTGTGTGTAAAGCTCTTTCTAAGAATCGTAAGGAACCACCAGCTGCTGCATCCCATGGCCAGGGGTGGCGTCCAGGTGGCAGAGCAGCTAGGAACGCAAGGCCTGAACCTGGGGCCAGACACCCTGCTCTCCCGGCCATGGTCAACGACCCTCCAGTACCTGCCTTACTGTGGGCCCAGGAGGACCGACTGTGATTCCTCCACCACCTCACTCTGCTCCTTCCCTGTTGCCAATGTCTCGCTGACTAAGGGTGGACGTGATCGGGTGCTGATGTATGGACAGCCGTATCGTGTTACCTTAGAGCTTGAGCTGCCAGAGTCCCCTGTGAATCAAGATTTGGGCATGTTCTTGGTCACCATTTCCTGCTACACCAGAGGTGGCCGAATCATCTCCACTTCTTCGCGTTCGGTAAGTGTTG</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG008535]][[Category:Transcripts]]

Latest revision as of 20:34, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT021792

Source

NONCODE4.0

Same with

,

Classification

sense

Length

691 nt

Genomic location

chr11-:62462030..62473692

Exon number

4

Exons

62462030..62462183,62469940..62470021,62472940..62473089,62473388..62473692

Genome context

Sequence
000001 CCATGGTTGC ACGATTAGGT AGGGGCTCCG GGCGCTTTGC CCACCCCCGA GCTGGAGGGG ACTGGCGGGA AGCGGCGGTT 000080
000081 GGCTGCAGGG CGCTCCGCCG GGCGTGGGGT GTAGCCGTGT CGGTGAGCGA GCTCTGCTCG AGGCGGAGAG GAGAAACTCG 000160
000161 GGAAGCAATT GTGGCTACTC TAAGGCTACT GGTTTCGAGT CAGGCCGTGC GACCTTAGGC AAGTCGCACA TTCTCTCCGT 000240
000241 GCAGCTGCCT AGCAGTGTGG ATTCAGTATC ACCGTGTGTG TAAAGCTCTT TCTAAGAATC GTAAGGAACC ACCAGCTGCT 000320
000321 GCATCCCATG GCCAGGGGTG GCGTCCAGGT GGCAGAGCAG CTAGGAACGC AAGGCCTGAA CCTGGGGCCA GACACCCTGC 000400
000401 TCTCCCGGCC ATGGTCAACG ACCCTCCAGT ACCTGCCTTA CTGTGGGCCC AGGAGGACCG ACTGTGATTC CTCCACCACC 000480
000481 TCACTCTGCT CCTTCCCTGT TGCCAATGTC TCGCTGACTA AGGGTGGACG TGATCGGGTG CTGATGTATG GACAGCCGTA 000560
000561 TCGTGTTACC TTAGAGCTTG AGCTGCCAGA GTCCCCTGTG AATCAAGATT TGGGCATGTT CTTGGTCACC ATTTCCTGCT 000640
000641 ACACCAGAGG TGGCCGAATC ATCTCCACTT CTTCGCGTTC GGTAAGTGTT G
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Predicted Small Protein

Name NONHSAT021792_smProtein_2:217
Length 72
Molecular weight 7700.8229
Aromaticity 0.0422535211268
Instability index 44.8197183099
Isoelectric point 11.8754272461
Runs 12
Runs residual 0.0204595997035
Runs probability 0.0468924807161
Amino acid sequence MVARLGRGSGRFAHPRAGGDWREAAVGCRALRRAWGVAVSVSELCSRRRGETREAIVATL
RLLVSSQAVRP
Secondary structure LEEEELLLLLEELLLLLLLLHHHHHHHHHHHHHHLLEEEEEHHHHLLLLLLHHHHHHHHH
HHHHHHLLLLL
PRMN -
PiMo -