Difference between revisions of "NONHSAT023259"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GTAGCCACTTTTAAGTTTTATCAGCTAGTTCATGCTTGCGTTGAAAGAGTGGTCGTTTGCGCTGGGTCATCACTGTGTAGTATTGGGGATACTTAGTTCTGTAAACCAGAAATCTAAAATCAGTCACTGGAGTAAAGTCAAGGTGTCATTTGGATTGGTTGCTTCCAGAGGCTCTGCAGGGAGATTGTTTTTCTTGTCTTTTTCAGCTTTTAGAAGTTGCCTGCATTCCTTGGCCCCTTCCTCACATCATTCCAACCAACTTCCATCCTTACAATCGATTACTTTCCTGTAATAGCTACAGTCAAATGGGCAGCTGAAGATGATGATGATGATGATCTTGACACCGAGAAGCAGAAGACCAATGAAGATGACCAGACAGCAAAAAAGGATAAGTTAAAAGAAGGTAAAAGAAGGCCACTCGTACTTGCTGTCTCAGTATCTAAAGGTGGTCACCTTCCAGTAGAGAGGCCCACCCACTGCAGACCGTGCCACCGAAGGTGACATGCACTTTCTGCCACCCATCCAAAACCGTAACGTGAATCTGCAACAGGAGAGGAAAGAAGAACCAAAACTTCCAAGGCCTTGCATTTTTTCTTAAAAGCATTTTTTTTTTTTTTTTTGGAGATGGAGTCTCGCTCTGTTGCCTGGAGTGCGGTGGCGTAGTTTCGGCTCGCTGAAGCCTCTGCTTCCCGGGTTTAAGAGATTCTCTGCCTCGGCCTCCCAGGTAGCTGGGATTGCGGGCGCATGCCACCACGCCTGTCTAATTTTTGTATTTTTGGGGGAGACGGGGTTTCGCCGTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACTGCACCTAGCCAAAAGCATTTTTTAAAGAAAAATTGGTCTATATTTTTTGTTTCTACTTTATATCTTTGTACATATTTTTAGAGTGCAGGCATTTTTAATAATCTTGGATGACCAAAGCAGCTTTCAGAATGTTCTTTGCCCAACTTCTGACTTTACTTGTAGTGTGACCATGTTCATTAGAATCTCAAAGGAGGAAGAAAAGAAAAAACAAACTTGTAAAAAATGAAAAATAGATCTGGCGAGGTGATTCATGGCTGTAAGCCCAGCACTTTGAGAGGCTAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAATCCTGTCTCTACTAAATATACAAAGATTAGCCAGGTGTGGTGGTGGGTGCCTGTGGTCCCGGCTACTCAGGAGGCTGAGACAGGAGAATCTGGAGCCCCGGAGGCAGAGGTTGCAGTGAGCCGGGATCGCACCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTATCTGAAAAAAAGCAAAAATAGGCCAGGCATGGTGGCTCATGCCTTGATCCCAGCACTTTGGTAGGCCTAGGCAGGTGGATCGCTTGAGGTCAGGGGTTCGAGACCAGCTTGGCCAACATGGTGAAAACCTGTCTCTACTGAAAGTACAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTGATCCCGGCTACGCGGGAGGCTGAGGCATGAGAATTGCTTGGGCTCAGGAGGCGGAGGTTGCAGTGAGCAGCAGTCATGCCATTGCACTCCAGCCTGGTGACAGAGTGAGACTCTGTCTCAAAAATAAATAAATGCAAAAACAACAAATCTTATTTTTTCAGCCTGTTCGATGTATGTGTGAAACAATGTTGTCCAACAATAAACGGGAATCTTATTTTT</dnaseq>| | sequence = <dnaseq>GTAGCCACTTTTAAGTTTTATCAGCTAGTTCATGCTTGCGTTGAAAGAGTGGTCGTTTGCGCTGGGTCATCACTGTGTAGTATTGGGGATACTTAGTTCTGTAAACCAGAAATCTAAAATCAGTCACTGGAGTAAAGTCAAGGTGTCATTTGGATTGGTTGCTTCCAGAGGCTCTGCAGGGAGATTGTTTTTCTTGTCTTTTTCAGCTTTTAGAAGTTGCCTGCATTCCTTGGCCCCTTCCTCACATCATTCCAACCAACTTCCATCCTTACAATCGATTACTTTCCTGTAATAGCTACAGTCAAATGGGCAGCTGAAGATGATGATGATGATGATCTTGACACCGAGAAGCAGAAGACCAATGAAGATGACCAGACAGCAAAAAAGGATAAGTTAAAAGAAGGTAAAAGAAGGCCACTCGTACTTGCTGTCTCAGTATCTAAAGGTGGTCACCTTCCAGTAGAGAGGCCCACCCACTGCAGACCGTGCCACCGAAGGTGACATGCACTTTCTGCCACCCATCCAAAACCGTAACGTGAATCTGCAACAGGAGAGGAAAGAAGAACCAAAACTTCCAAGGCCTTGCATTTTTTCTTAAAAGCATTTTTTTTTTTTTTTTTGGAGATGGAGTCTCGCTCTGTTGCCTGGAGTGCGGTGGCGTAGTTTCGGCTCGCTGAAGCCTCTGCTTCCCGGGTTTAAGAGATTCTCTGCCTCGGCCTCCCAGGTAGCTGGGATTGCGGGCGCATGCCACCACGCCTGTCTAATTTTTGTATTTTTGGGGGAGACGGGGTTTCGCCGTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACTGCACCTAGCCAAAAGCATTTTTTAAAGAAAAATTGGTCTATATTTTTTGTTTCTACTTTATATCTTTGTACATATTTTTAGAGTGCAGGCATTTTTAATAATCTTGGATGACCAAAGCAGCTTTCAGAATGTTCTTTGCCCAACTTCTGACTTTACTTGTAGTGTGACCATGTTCATTAGAATCTCAAAGGAGGAAGAAAAGAAAAAACAAACTTGTAAAAAATGAAAAATAGATCTGGCGAGGTGATTCATGGCTGTAAGCCCAGCACTTTGAGAGGCTAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAATCCTGTCTCTACTAAATATACAAAGATTAGCCAGGTGTGGTGGTGGGTGCCTGTGGTCCCGGCTACTCAGGAGGCTGAGACAGGAGAATCTGGAGCCCCGGAGGCAGAGGTTGCAGTGAGCCGGGATCGCACCATTGCACTCCAGCCTGGGCGACAGAGTGAGACTATCTGAAAAAAAGCAAAAATAGGCCAGGCATGGTGGCTCATGCCTTGATCCCAGCACTTTGGTAGGCCTAGGCAGGTGGATCGCTTGAGGTCAGGGGTTCGAGACCAGCTTGGCCAACATGGTGAAAACCTGTCTCTACTGAAAGTACAAAAATTAGCCAGGCGTGGTGGTGGGTGCCTGTGATCCCGGCTACGCGGGAGGCTGAGGCATGAGAATTGCTTGGGCTCAGGAGGCGGAGGTTGCAGTGAGCAGCAGTCATGCCATTGCACTCCAGCCTGGTGACAGAGTGAGACTCTGTCTCAAAAATAAATAAATGCAAAAACAACAAATCTTATTTTTTCAGCCTGTTCGATGTATGTGTGAAACAATGTTGTCCAACAATAAACGGGAATCTTATTTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG009177]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:40, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023259 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1791 nt |
Genomic location |
chr11+:77850849..77854134 |
Exon number |
2 |
Exons |
77850849..77850944,77852442..77854134 |
Genome context |
|
Sequence |
000001 GTAGCCACTT TTAAGTTTTA TCAGCTAGTT CATGCTTGCG TTGAAAGAGT GGTCGTTTGC GCTGGGTCAT CACTGTGTAG 000080
000081 TATTGGGGAT ACTTAGTTCT GTAAACCAGA AATCTAAAAT CAGTCACTGG AGTAAAGTCA AGGTGTCATT TGGATTGGTT 000160 000161 GCTTCCAGAG GCTCTGCAGG GAGATTGTTT TTCTTGTCTT TTTCAGCTTT TAGAAGTTGC CTGCATTCCT TGGCCCCTTC 000240 000241 CTCACATCAT TCCAACCAAC TTCCATCCTT ACAATCGATT ACTTTCCTGT AATAGCTACA GTCAAATGGG CAGCTGAAGA 000320 000321 TGATGATGAT GATGATCTTG ACACCGAGAA GCAGAAGACC AATGAAGATG ACCAGACAGC AAAAAAGGAT AAGTTAAAAG 000400 000401 AAGGTAAAAG AAGGCCACTC GTACTTGCTG TCTCAGTATC TAAAGGTGGT CACCTTCCAG TAGAGAGGCC CACCCACTGC 000480 000481 AGACCGTGCC ACCGAAGGTG ACATGCACTT TCTGCCACCC ATCCAAAACC GTAACGTGAA TCTGCAACAG GAGAGGAAAG 000560 000561 AAGAACCAAA ACTTCCAAGG CCTTGCATTT TTTCTTAAAA GCATTTTTTT TTTTTTTTTT GGAGATGGAG TCTCGCTCTG 000640 000641 TTGCCTGGAG TGCGGTGGCG TAGTTTCGGC TCGCTGAAGC CTCTGCTTCC CGGGTTTAAG AGATTCTCTG CCTCGGCCTC 000720 000721 CCAGGTAGCT GGGATTGCGG GCGCATGCCA CCACGCCTGT CTAATTTTTG TATTTTTGGG GGAGACGGGG TTTCGCCGTG 000800 000801 TTGGCCAGGC TGGTCTTGAA CTCCTGACCT CGTGATCCAC CTGCCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCCTGAG 000880 000881 CCACTGCACC TAGCCAAAAG CATTTTTTAA AGAAAAATTG GTCTATATTT TTTGTTTCTA CTTTATATCT TTGTACATAT 000960 000961 TTTTAGAGTG CAGGCATTTT TAATAATCTT GGATGACCAA AGCAGCTTTC AGAATGTTCT TTGCCCAACT TCTGACTTTA 001040 001041 CTTGTAGTGT GACCATGTTC ATTAGAATCT CAAAGGAGGA AGAAAAGAAA AAACAAACTT GTAAAAAATG AAAAATAGAT 001120 001121 CTGGCGAGGT GATTCATGGC TGTAAGCCCA GCACTTTGAG AGGCTAAGGC GGGTGGATCA CCTGAGGTCA GGAGTTCGAG 001200 001201 ACCAGCCTGG CCAACATGGT GAAATCCTGT CTCTACTAAA TATACAAAGA TTAGCCAGGT GTGGTGGTGG GTGCCTGTGG 001280 001281 TCCCGGCTAC TCAGGAGGCT GAGACAGGAG AATCTGGAGC CCCGGAGGCA GAGGTTGCAG TGAGCCGGGA TCGCACCATT 001360 001361 GCACTCCAGC CTGGGCGACA GAGTGAGACT ATCTGAAAAA AAGCAAAAAT AGGCCAGGCA TGGTGGCTCA TGCCTTGATC 001440 001441 CCAGCACTTT GGTAGGCCTA GGCAGGTGGA TCGCTTGAGG TCAGGGGTTC GAGACCAGCT TGGCCAACAT GGTGAAAACC 001520 001521 TGTCTCTACT GAAAGTACAA AAATTAGCCA GGCGTGGTGG TGGGTGCCTG TGATCCCGGC TACGCGGGAG GCTGAGGCAT 001600 001601 GAGAATTGCT TGGGCTCAGG AGGCGGAGGT TGCAGTGAGC AGCAGTCATG CCATTGCACT CCAGCCTGGT GACAGAGTGA 001680 001681 GACTCTGTCT CAAAAATAAA TAAATGCAAA AACAACAAAT CTTATTTTTT CAGCCTGTTC GATGTATGTG TGAAACAATG 001760 001761 TTGTCCAACA ATAAACGGGA ATCTTATTTT T |
Predicted Small Protein
Name | NONHSAT023259_smProtein_1598:1702 |
Length | 35 |
Molecular weight | 3749.3283 |
Aromaticity | 0.0294117647059 |
Instability index | 43.2294117647 |
Isoelectric point | 9.30059814453 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0408812173519 |
Amino acid sequence | MRIAWAQEAEVAVSSSHAIALQPGDRVRLCLKNK |
Secondary structure | LLHHHHHHHHHHLLLHHHHHLLLLLLEEEEEELL |
PRMN | - |
PiMo | - |