Difference between revisions of "NONHSAT023402"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>AACTGCAGGGCCAGCTGGAGTATGAACGACTACGTAGAGAAAAATTAGAATGTCAGCTTGATGAATATCGAGCAGAAGTTGATCAACTCAGGGAAACACTGGAAAAAATTCAAGTCCCAAACTTTGTGGCTATGGAAGACAGCGCTTCTTGTGAGTCAAACAAAGAGAAGAGGCGAGTAAAAAAAAAGGTTTCTTCTGGAGGGGTGTTTGTGAGAAGatttacaattgggcaagtcactttacctagggcagagtggataaggggatgaagagtgacgacagtgttatgctactggagcttccttcacatggaggaaaGACGCATTCCCTCTTAATATTTTAGAATATTTTAAATCTTAACAAACCAATAatttacttgtttatgtctctctccttaagattgtcaattcaatgagaatgaaaccatgttcatctctgtgcacacagggactagcatgctgtttggcatatagcaggcagtcatattggttaactgaacaaatGCAGTATACTTTGTTACAGTGGACTTTAATATATATGGTAACTTATTAATTGACTCAGTGAAAATTAATCTATAATATACTAAGAACTCTCTTAGGCAATAGAGATAAAAATGAATCAGAATGTAACAGGATAATGTCAAGGTTTTTCTTTTGAAAACAAACCAGCAGTTAGATTTTTGAGGAAAATATAGTTGGAAAGCCTGACTCTCACTCACTGGACCATATGGACCAATCTCTTGACTGCTCTATACTGCAGATTCCCTGTTTATAGCTAAACAAATGACAAGGCTATTTTGAATAATGATTGTCAAACTTTTATAGCTATTACCAAGGCATTATGAACTCAAAATGT</dnaseq>|
 
sequence = <dnaseq>AACTGCAGGGCCAGCTGGAGTATGAACGACTACGTAGAGAAAAATTAGAATGTCAGCTTGATGAATATCGAGCAGAAGTTGATCAACTCAGGGAAACACTGGAAAAAATTCAAGTCCCAAACTTTGTGGCTATGGAAGACAGCGCTTCTTGTGAGTCAAACAAAGAGAAGAGGCGAGTAAAAAAAAAGGTTTCTTCTGGAGGGGTGTTTGTGAGAAGatttacaattgggcaagtcactttacctagggcagagtggataaggggatgaagagtgacgacagtgttatgctactggagcttccttcacatggaggaaaGACGCATTCCCTCTTAATATTTTAGAATATTTTAAATCTTAACAAACCAATAatttacttgtttatgtctctctccttaagattgtcaattcaatgagaatgaaaccatgttcatctctgtgcacacagggactagcatgctgtttggcatatagcaggcagtcatattggttaactgaacaaatGCAGTATACTTTGTTACAGTGGACTTTAATATATATGGTAACTTATTAATTGACTCAGTGAAAATTAATCTATAATATACTAAGAACTCTCTTAGGCAATAGAGATAAAAATGAATCAGAATGTAACAGGATAATGTCAAGGTTTTTCTTTTGAAAACAAACCAGCAGTTAGATTTTTGAGGAAAATATAGTTGGAAAGCCTGACTCTCACTCACTGGACCATATGGACCAATCTCTTGACTGCTCTATACTGCAGATTCCCTGTTTATAGCTAAACAAATGACAAGGCTATTTTGAATAATGATTGTCAAACTTTTATAGCTATTACCAAGGCATTATGAACTCAAAATGT</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG009232]]
+
[[Category:Sense]][[Category:NONHSAG009232]][[Category:Transcripts]]

Latest revision as of 20:41, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023402

Source

NONCODE4.0

Same with

,

Classification

sense

Length

855 nt

Genomic location

chr11+:82958996..82971736

Exon number

3

Exons

82958996..82959129,82966887..82966969,82971099..82971736

Genome context

Sequence
000001 AACTGCAGGG CCAGCTGGAG TATGAACGAC TACGTAGAGA AAAATTAGAA TGTCAGCTTG ATGAATATCG AGCAGAAGTT 000080
000081 GATCAACTCA GGGAAACACT GGAAAAAATT CAAGTCCCAA ACTTTGTGGC TATGGAAGAC AGCGCTTCTT GTGAGTCAAA 000160
000161 CAAAGAGAAG AGGCGAGTAA AAAAAAAGGT TTCTTCTGGA GGGGTGTTTG TGAGAAGatt tacaattggg caagtcactt 000240
000241 tacctagggc agagtggata aggggatgaa gagtgacgac agtgttatgc tactggagct tccttcacat ggaggaaaGA 000320
000321 CGCATTCCCT CTTAATATTT TAGAATATTT TAAATCTTAA CAAACCAATA atttacttgt ttatgtctct ctccttaaga 000400
000401 ttgtcaattc aatgagaatg aaaccatgtt catctctgtg cacacaggga ctagcatgct gtttggcata tagcaggcag 000480
000481 tcatattggt taactgaaca aatGCAGTAT ACTTTGTTAC AGTGGACTTT AATATATATG GTAACTTATT AATTGACTCA 000560
000561 GTGAAAATTA ATCTATAATA TACTAAGAAC TCTCTTAGGC AATAGAGATA AAAATGAATC AGAATGTAAC AGGATAATGT 000640
000641 CAAGGTTTTT CTTTTGAAAA CAAACCAGCA GTTAGATTTT TGAGGAAAAT ATAGTTGGAA AGCCTGACTC TCACTCACTG 000720
000721 GACCATATGG ACCAATCTCT TGACTGCTCT ATACTGCAGA TTCCCTGTTT ATAGCTAAAC AAATGACAAG GCTATTTTGA 000800
000801 ATAATGATTG TCAAACTTTT ATAGCTATTA CCAAGGCATT ATGAACTCAA AATGT
[back to top]

Predicted Small Protein

Name NONHSAT023402_smProtein_131:268
Length 46
Molecular weight 5124.8609
Aromaticity 0.0666666666667
Instability index 66.1377777778
Isoelectric point 10.5188598633
Runs 8
Runs residual 0.0155303030303
Runs probability 0.029367602897
Amino acid sequence MEDSASCESNKEKRRVKKKVSSGGVFVRRFTIGQVTLPRAEWIRG
Secondary structure LLLLLLLLLLHHHHEEEEEELLLLEEEEEEEEEEEELLLLEEEEL
PRMN -
PiMo -