Difference between revisions of "NONHSAT023880"
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sequence = <dnaseq>GTGCGTCAGAGTGAGCCCGGATGGGGCGGCGGGCTTCGGGAGCGCCCGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGATTTACAACCCTGAAGAATCTCCCTATCCCTATTTTGTCCCCCTGCAGTAATAAATCCCATTATGGAGATCTCGAAACTTTATAAAGGGATATAGTTTGAATTCTATGGAGTGTAATTTTGTGTATGAATTATATTTTTAAAACATTGAAGAGTTTTCAGAAAGAAGAATGTCTACATATTCAACTTTCCCCGCCGGGGTGCCTGTCTCAGAAAGGAGTCTTGCTCGTGCTGGTTTTTATTATACTGGTGTGAATGACAAGGTCAAATGCTTCTGTTGTGGCCTGATGCTGGATAACTGGAAACTAGGAGACAGTCCTATTCAAAAGCATAAACAGCTATATCCTAGCTGTAGCTTTATTCAGAATCTGGTTTCAGCTAGTCTGGGATCCACCTCTAAGAAT</dnaseq>| | sequence = <dnaseq>GTGCGTCAGAGTGAGCCCGGATGGGGCGGCGGGCTTCGGGAGCGCCCGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGATTTACAACCCTGAAGAATCTCCCTATCCCTATTTTGTCCCCCTGCAGTAATAAATCCCATTATGGAGATCTCGAAACTTTATAAAGGGATATAGTTTGAATTCTATGGAGTGTAATTTTGTGTATGAATTATATTTTTAAAACATTGAAGAGTTTTCAGAAAGAAGAATGTCTACATATTCAACTTTCCCCGCCGGGGTGCCTGTCTCAGAAAGGAGTCTTGCTCGTGCTGGTTTTTATTATACTGGTGTGAATGACAAGGTCAAATGCTTCTGTTGTGGCCTGATGCTGGATAACTGGAAACTAGGAGACAGTCCTATTCAAAAGCATAAACAGCTATATCCTAGCTGTAGCTTTATTCAGAATCTGGTTTCAGCTAGTCTGGGATCCACCTCTAAGAAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG009472]] | + | [[Category:Sense]][[Category:NONHSAG009472]][[Category:Transcripts]] |
Latest revision as of 20:43, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023880 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
562 nt |
Genomic location |
chr11+:102217948..102220966 |
Exon number |
3 |
Exons |
102217948..102218107,102219329..102219495,102220732..102220966 |
Genome context |
|
Sequence |
000001 GTGCGTCAGA GTGAGCCCGG ATGGGGCGGC GGGCTTCGGG AGCGCCCGGG CTGATCCGAG CCGAGCGGGC CGTATCTCCT 000080
000081 TGTCGGCGCC GCTGATTCCC GGCTCTGCGG AGGCCTCTAG GCAGCCGCGC AGCTTCCGTG TTTGCTGCGC CCGCACTGCG 000160 000161 ATTTACAACC CTGAAGAATC TCCCTATCCC TATTTTGTCC CCCTGCAGTA ATAAATCCCA TTATGGAGAT CTCGAAACTT 000240 000241 TATAAAGGGA TATAGTTTGA ATTCTATGGA GTGTAATTTT GTGTATGAAT TATATTTTTA AAACATTGAA GAGTTTTCAG 000320 000321 AAAGAAGAAT GTCTACATAT TCAACTTTCC CCGCCGGGGT GCCTGTCTCA GAAAGGAGTC TTGCTCGTGC TGGTTTTTAT 000400 000401 TATACTGGTG TGAATGACAA GGTCAAATGC TTCTGTTGTG GCCTGATGCT GGATAACTGG AAACTAGGAG ACAGTCCTAT 000480 000481 TCAAAAGCAT AAACAGCTAT ATCCTAGCTG TAGCTTTATT CAGAATCTGG TTTCAGCTAG TCTGGGATCC ACCTCTAAGA 000560 000561 AT |
Predicted Small Protein
Name | NONHSAT023880_smProtein_284:412 |
Length | 43 |
Molecular weight | 4791.8224 |
Aromaticity | 0.0952380952381 |
Instability index | 64.2166666667 |
Isoelectric point | 8.76947021484 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.0286462933522 |
Amino acid sequence | MNYIFKTLKSFQKEECLHIQLSPPGCLSQKGVLLVLVFIILV |
Secondary structure | LLHHHHHHHHHHHHHHHEEEELLLLLLLLLLEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i????????????????????????????????????????? |