Difference between revisions of "NONHSAT023880"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>GTGCGTCAGAGTGAGCCCGGATGGGGCGGCGGGCTTCGGGAGCGCCCGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGATTTACAACCCTGAAGAATCTCCCTATCCCTATTTTGTCCCCCTGCAGTAATAAATCCCATTATGGAGATCTCGAAACTTTATAAAGGGATATAGTTTGAATTCTATGGAGTGTAATTTTGTGTATGAATTATATTTTTAAAACATTGAAGAGTTTTCAGAAAGAAGAATGTCTACATATTCAACTTTCCCCGCCGGGGTGCCTGTCTCAGAAAGGAGTCTTGCTCGTGCTGGTTTTTATTATACTGGTGTGAATGACAAGGTCAAATGCTTCTGTTGTGGCCTGATGCTGGATAACTGGAAACTAGGAGACAGTCCTATTCAAAAGCATAAACAGCTATATCCTAGCTGTAGCTTTATTCAGAATCTGGTTTCAGCTAGTCTGGGATCCACCTCTAAGAAT</dnaseq>|
 
sequence = <dnaseq>GTGCGTCAGAGTGAGCCCGGATGGGGCGGCGGGCTTCGGGAGCGCCCGGGCTGATCCGAGCCGAGCGGGCCGTATCTCCTTGTCGGCGCCGCTGATTCCCGGCTCTGCGGAGGCCTCTAGGCAGCCGCGCAGCTTCCGTGTTTGCTGCGCCCGCACTGCGATTTACAACCCTGAAGAATCTCCCTATCCCTATTTTGTCCCCCTGCAGTAATAAATCCCATTATGGAGATCTCGAAACTTTATAAAGGGATATAGTTTGAATTCTATGGAGTGTAATTTTGTGTATGAATTATATTTTTAAAACATTGAAGAGTTTTCAGAAAGAAGAATGTCTACATATTCAACTTTCCCCGCCGGGGTGCCTGTCTCAGAAAGGAGTCTTGCTCGTGCTGGTTTTTATTATACTGGTGTGAATGACAAGGTCAAATGCTTCTGTTGTGGCCTGATGCTGGATAACTGGAAACTAGGAGACAGTCCTATTCAAAAGCATAAACAGCTATATCCTAGCTGTAGCTTTATTCAGAATCTGGTTTCAGCTAGTCTGGGATCCACCTCTAAGAAT</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG009472]]
+
[[Category:Sense]][[Category:NONHSAG009472]][[Category:Transcripts]]

Latest revision as of 20:43, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023880

Source

NONCODE4.0

Same with

,

Classification

sense

Length

562 nt

Genomic location

chr11+:102217948..102220966

Exon number

3

Exons

102217948..102218107,102219329..102219495,102220732..102220966

Genome context

Sequence
000001 GTGCGTCAGA GTGAGCCCGG ATGGGGCGGC GGGCTTCGGG AGCGCCCGGG CTGATCCGAG CCGAGCGGGC CGTATCTCCT 000080
000081 TGTCGGCGCC GCTGATTCCC GGCTCTGCGG AGGCCTCTAG GCAGCCGCGC AGCTTCCGTG TTTGCTGCGC CCGCACTGCG 000160
000161 ATTTACAACC CTGAAGAATC TCCCTATCCC TATTTTGTCC CCCTGCAGTA ATAAATCCCA TTATGGAGAT CTCGAAACTT 000240
000241 TATAAAGGGA TATAGTTTGA ATTCTATGGA GTGTAATTTT GTGTATGAAT TATATTTTTA AAACATTGAA GAGTTTTCAG 000320
000321 AAAGAAGAAT GTCTACATAT TCAACTTTCC CCGCCGGGGT GCCTGTCTCA GAAAGGAGTC TTGCTCGTGC TGGTTTTTAT 000400
000401 TATACTGGTG TGAATGACAA GGTCAAATGC TTCTGTTGTG GCCTGATGCT GGATAACTGG AAACTAGGAG ACAGTCCTAT 000480
000481 TCAAAAGCAT AAACAGCTAT ATCCTAGCTG TAGCTTTATT CAGAATCTGG TTTCAGCTAG TCTGGGATCC ACCTCTAAGA 000560
000561 AT
[back to top]

Predicted Small Protein

Name NONHSAT023880_smProtein_284:412
Length 43
Molecular weight 4791.8224
Aromaticity 0.0952380952381
Instability index 64.2166666667
Isoelectric point 8.76947021484
Runs 6
Runs residual 0.0333031946956
Runs probability 0.0286462933522
Amino acid sequence MNYIFKTLKSFQKEECLHIQLSPPGCLSQKGVLLVLVFIILV
Secondary structure LLHHHHHHHHHHHHHHHEEEELLLLLLLLLLEEEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i?????????????????????????????????????????