Difference between revisions of "NONHSAT026069"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>AGGAAAGGGCCCTGACAAGAGGATGGGACTGCAGTTGTGGCTGCCAGgttggagtgcagtggcacgatctcggctcagtgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctccctagtagctgggattacaggtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAGCATGTATCCCCAAATAAACAATATTTTATTTATTGATTGATTGATAAACAGACATGTTTAATGATAGCTTGCTTTTCACAGAGGTGACTTCGGAGACTTCTAATCTATAATCCAGGAGTATATAACCATGCAGCACAGACCAATTAGTCACATGTAAAATAAACTAGATTCTTACCAC</dnaseq>|
 
sequence = <dnaseq>AGGAAAGGGCCCTGACAAGAGGATGGGACTGCAGTTGTGGCTGCCAGgttggagtgcagtggcacgatctcggctcagtgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctccctagtagctgggattacaggtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAGCATGTATCCCCAAATAAACAATATTTTATTTATTGATTGATTGATAAACAGACATGTTTAATGATAGCTTGCTTTTCACAGAGGTGACTTCGGAGACTTCTAATCTATAATCCAGGAGTATATAACCATGCAGCACAGACCAATTAGTCACATGTAAAATAAACTAGATTCTTACCAC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG010301]][[Category:Transcripts]]

Latest revision as of 20:51, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT026069

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

821 nt

Genomic location

chr12-:6548167..6560681

Exon number

3

Exons

6548167..6548842,6557806..6557903,6560635..6560681

Genome context

Sequence
000001 AGGAAAGGGC CCTGACAAGA GGATGGGACT GCAGTTGTGG CTGCCAGgtt ggagtgcagt ggcacgatct cggctcagtg 000080
000081 caacctccgc ctcctgagtt caagtgattc tcctgcctca gcctccctag tagctgggat tacaggtaga cccagtgtaa 000160
000161 tcacaagcat ccttgtaagt ggcaaagagg cagaggagac agcgccagag aggcagctgc atgagaagga tcaagatgtt 000240
000241 gctgactttg aagttggaag aagaaggcca tgagcctcag tatgtgggcg gcttctagaa gctggaaggg gcaaggagat 000320
000321 ggatttgacc cttcagcctc caggggcagc tgtacctgcc atcactgatt gtagcctggt gaggcctgtt ttagacttct 000400
000401 gacctgtaga gctgtaacat aatacatttg ggttgttttc aaccactaag tttgtggtaa tttgttgtag cagctgtaga 000480
000481 aaatgaatac atatgaatcc tctggcattt gtttgagatt tgctctatgg cctagtatgt ggttgtaaat gttccatctg 000560
000561 tgcctgaaaa aatgtatatt TCTAATTCAG TAGTCTCTGC TTTTTTTTTT TATTTTGTAC CCCATCAATA AAATGATTTT 000640
000641 CAGCATGTAT CCCCAAATAA ACAATATTTT ATTTATTGAT TGATTGATAA ACAGACATGT TTAATGATAG CTTGCTTTTC 000720
000721 ACAGAGGTGA CTTCGGAGAC TTCTAATCTA TAATCCAGGA GTATATAACC ATGCAGCACA GACCAATTAG TCACATGTAA 000800
000801 AATAAACTAG ATTCTTACCA C
[back to top]

Predicted Small Protein

Name NONHSAT026069_smProtein_269:367
Length 33
Molecular weight 3441.7697
Aromaticity 0.09375
Instability index 79.621875
Isoelectric point 7.86859130859
Runs 5
Runs residual 0.0353954081633
Runs probability 0.0231937820173
Amino acid sequence MSLSMWAASRSWKGQGDGFDPSASRGSCTCHH
Secondary structure LLLLHHHHHHHHLLLLLLLLLLLLLLLEELLL
PRMN -
PiMo -