Difference between revisions of "NONHSAT027140"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>acaactaactcagcaatggtgggcgcccctcccccagcctcgctgctgccttgcagtttgatctcggactgctgtgctagcaatgagcgagactccgtgggcatgggaccctccgagccaggtgcgagatataatctcctggtgtgccttgttttaagcccattggaaaagcacagtattagagtgggagagacctgattttccaggtgccgtctctcacccctttctttgactaggaaagggaattccctgaccccttgcacttcctgggtgaggcgatgcctcgccttgctttggctcgtgcacggtgcactgcacccactgacctgcgcctactgtctggcactccccagcgagatgaacctggtacctcagttggaaatgcagaaatcacccgttttctgcctcactcacgctgggagctgtagaccggagctgttcctattcggccatcttggcttctctcTGAGCTAATACTTTTAAAATATTTTGCACTCCACAGAGGAAGGTTTTATATGTAAGTCTGAGTTTTGTTTTTCTGAGTTGTTTTCAGTTGGTCCATGTGATTACATTTTTATACATGGtaaaaatttatatatttttttCCAAGtctttttctttttcttttcttttcttttttctttttatttttgagacggagttttgttcttgttgtccaggatggagtgcaatggcatgatctcagctcaccgcaacctctgcctcccggattcaagtgattctcctgcctcagcctcttgagtagctgggattacagGTCTAGTggcacttgaatctttagcacaacagggagcctctgtgcccagggttcagtggcttccaggaattcttcccagaataaacctcaacattctgcagtcttcatgggtgctggcgcaagttgcttttcaagttcttcatactctactgacctcagacttcttctcagcccgaggaaaacagcttcctcttcctcctggccattcaccaagacacaccattctcttctctccttgtccagggcgcttagcatggtcacttcCAAAGTTTGTGCATTTTCAAAAGAAAATGAAGACATCCTTCCATGCTGTTGCAAACATGCCCTGAGGCAAGAAATCACAAAGGCTCTTTGGAAAACAGGAATAAGTGACTGCAGGTATGACAGAAAGTGAAACAGAATAAATGAAAATTAACGCCCCACAGATGTATTTATCCACAAATTTTATCATAAGGTGACTTGTTGGTAGTCACATAAAAAGTAGAAAAAAACCCCTCTGAATCAAGTATTTTAAAGTATTCCTGGGTATCTTTCCTCTAAGTCTCAGATTATCCACACAGGGTCCACATAGTTTTAAGAATAGTTGGCATGCCTAGGCTTAACTCTGTGGGACAGTAAATTTTTTTAAAAAAAAGCTTTTGCCTGCTCTTGGAAGACAATATTGTGTTCAATATAGTGCAGTGCTCCACAGCTTGTAAAATCAACTATGTGGCACAAATCTGAAGACGTCTTCAAAAGATATATGGCAAGAAAGATATGTTGCCGGCTTTAGTCATCTTTGCCATTTCTCTTATGGAATTTCACTATAGTGGCTGGACATGTGCAACCCACATCCTGTCTGGCCTTAATGTGATTTTTCTACAAAAGGAGAGGAGGACAAAAGTAAAAGCAAAATATGCTTTACAATGAAAAATGCAACCCTCAGCCACTGGGATAAAATTACATTGACAGTGGGGGAGTTATTTTCTTCCTTCAAAGAACGATGTTTGATGTTCCAACTAGACTCTATGGTGATGAAGCTCATAATTTGGGAGCTGAATCAGATTCGAATTTAGAAAAGGGGTTTCAGACGTTGCTTAGCAGGGTGATTTTAGGGGTTAACATATGAATAGAGATTACATTATAACTCATCTGCCCTGTGTTTGTTGGACACAGCTTATATGACCTATTCCTGATGGTTGCTCATAGAAGGATATTTAAATTCTGTTGTAATTCTTCCTTATAAAATCTGTGACATTCTAATAGATAGAAAATGTTTAAATCTTGTCTAGTTTCTGCTTCGTTTCCTTCTTTATGTTGATTTCTTCCTATTTATCTCTTTTGTGCATCACACATATTTCACTATAAACTCGATTTTTGTGGGTGAAAGGCCAC</dnaseq>| | sequence = <dnaseq>acaactaactcagcaatggtgggcgcccctcccccagcctcgctgctgccttgcagtttgatctcggactgctgtgctagcaatgagcgagactccgtgggcatgggaccctccgagccaggtgcgagatataatctcctggtgtgccttgttttaagcccattggaaaagcacagtattagagtgggagagacctgattttccaggtgccgtctctcacccctttctttgactaggaaagggaattccctgaccccttgcacttcctgggtgaggcgatgcctcgccttgctttggctcgtgcacggtgcactgcacccactgacctgcgcctactgtctggcactccccagcgagatgaacctggtacctcagttggaaatgcagaaatcacccgttttctgcctcactcacgctgggagctgtagaccggagctgttcctattcggccatcttggcttctctcTGAGCTAATACTTTTAAAATATTTTGCACTCCACAGAGGAAGGTTTTATATGTAAGTCTGAGTTTTGTTTTTCTGAGTTGTTTTCAGTTGGTCCATGTGATTACATTTTTATACATGGtaaaaatttatatatttttttCCAAGtctttttctttttcttttcttttcttttttctttttatttttgagacggagttttgttcttgttgtccaggatggagtgcaatggcatgatctcagctcaccgcaacctctgcctcccggattcaagtgattctcctgcctcagcctcttgagtagctgggattacagGTCTAGTggcacttgaatctttagcacaacagggagcctctgtgcccagggttcagtggcttccaggaattcttcccagaataaacctcaacattctgcagtcttcatgggtgctggcgcaagttgcttttcaagttcttcatactctactgacctcagacttcttctcagcccgaggaaaacagcttcctcttcctcctggccattcaccaagacacaccattctcttctctccttgtccagggcgcttagcatggtcacttcCAAAGTTTGTGCATTTTCAAAAGAAAATGAAGACATCCTTCCATGCTGTTGCAAACATGCCCTGAGGCAAGAAATCACAAAGGCTCTTTGGAAAACAGGAATAAGTGACTGCAGGTATGACAGAAAGTGAAACAGAATAAATGAAAATTAACGCCCCACAGATGTATTTATCCACAAATTTTATCATAAGGTGACTTGTTGGTAGTCACATAAAAAGTAGAAAAAAACCCCTCTGAATCAAGTATTTTAAAGTATTCCTGGGTATCTTTCCTCTAAGTCTCAGATTATCCACACAGGGTCCACATAGTTTTAAGAATAGTTGGCATGCCTAGGCTTAACTCTGTGGGACAGTAAATTTTTTTAAAAAAAAGCTTTTGCCTGCTCTTGGAAGACAATATTGTGTTCAATATAGTGCAGTGCTCCACAGCTTGTAAAATCAACTATGTGGCACAAATCTGAAGACGTCTTCAAAAGATATATGGCAAGAAAGATATGTTGCCGGCTTTAGTCATCTTTGCCATTTCTCTTATGGAATTTCACTATAGTGGCTGGACATGTGCAACCCACATCCTGTCTGGCCTTAATGTGATTTTTCTACAAAAGGAGAGGAGGACAAAAGTAAAAGCAAAATATGCTTTACAATGAAAAATGCAACCCTCAGCCACTGGGATAAAATTACATTGACAGTGGGGGAGTTATTTTCTTCCTTCAAAGAACGATGTTTGATGTTCCAACTAGACTCTATGGTGATGAAGCTCATAATTTGGGAGCTGAATCAGATTCGAATTTAGAAAAGGGGTTTCAGACGTTGCTTAGCAGGGTGATTTTAGGGGTTAACATATGAATAGAGATTACATTATAACTCATCTGCCCTGTGTTTGTTGGACACAGCTTATATGACCTATTCCTGATGGTTGCTCATAGAAGGATATTTAAATTCTGTTGTAATTCTTCCTTATAAAATCTGTGACATTCTAATAGATAGAAAATGTTTAAATCTTGTCTAGTTTCTGCTTCGTTTCCTTCTTTATGTTGATTTCTTCCTATTTATCTCTTTTGTGCATCACACATATTTCACTATAAACTCGATTTTTGTGGGTGAAAGGCCAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG010598]][[Category:Transcripts]] |
Latest revision as of 20:55, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027140 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2152 nt |
Genomic location |
chr12+:16535761..16591695 |
Exon number |
2 |
Exons |
16535761..16536538,16590322..16591695 |
Genome context |
|
Sequence |
000001 acaactaact cagcaatggt gggcgcccct cccccagcct cgctgctgcc ttgcagtttg atctcggact gctgtgctag 000080
000081 caatgagcga gactccgtgg gcatgggacc ctccgagcca ggtgcgagat ataatctcct ggtgtgcctt gttttaagcc 000160 000161 cattggaaaa gcacagtatt agagtgggag agacctgatt ttccaggtgc cgtctctcac ccctttcttt gactaggaaa 000240 000241 gggaattccc tgaccccttg cacttcctgg gtgaggcgat gcctcgcctt gctttggctc gtgcacggtg cactgcaccc 000320 000321 actgacctgc gcctactgtc tggcactccc cagcgagatg aacctggtac ctcagttgga aatgcagaaa tcacccgttt 000400 000401 tctgcctcac tcacgctggg agctgtagac cggagctgtt cctattcggc catcttggct tctctcTGAG CTAATACTTT 000480 000481 TAAAATATTT TGCACTCCAC AGAGGAAGGT TTTATATGTA AGTCTGAGTT TTGTTTTTCT GAGTTGTTTT CAGTTGGTCC 000560 000561 ATGTGATTAC ATTTTTATAC ATGGtaaaaa tttatatatt tttttCCAAG tctttttctt tttcttttct tttctttttt 000640 000641 ctttttattt ttgagacgga gttttgttct tgttgtccag gatggagtgc aatggcatga tctcagctca ccgcaacctc 000720 000721 tgcctcccgg attcaagtga ttctcctgcc tcagcctctt gagtagctgg gattacagGT CTAGTggcac ttgaatcttt 000800 000801 agcacaacag ggagcctctg tgcccagggt tcagtggctt ccaggaattc ttcccagaat aaacctcaac attctgcagt 000880 000881 cttcatgggt gctggcgcaa gttgcttttc aagttcttca tactctactg acctcagact tcttctcagc ccgaggaaaa 000960 000961 cagcttcctc ttcctcctgg ccattcacca agacacacca ttctcttctc tccttgtcca gggcgcttag catggtcact 001040 001041 tcCAAAGTTT GTGCATTTTC AAAAGAAAAT GAAGACATCC TTCCATGCTG TTGCAAACAT GCCCTGAGGC AAGAAATCAC 001120 001121 AAAGGCTCTT TGGAAAACAG GAATAAGTGA CTGCAGGTAT GACAGAAAGT GAAACAGAAT AAATGAAAAT TAACGCCCCA 001200 001201 CAGATGTATT TATCCACAAA TTTTATCATA AGGTGACTTG TTGGTAGTCA CATAAAAAGT AGAAAAAAAC CCCTCTGAAT 001280 001281 CAAGTATTTT AAAGTATTCC TGGGTATCTT TCCTCTAAGT CTCAGATTAT CCACACAGGG TCCACATAGT TTTAAGAATA 001360 001361 GTTGGCATGC CTAGGCTTAA CTCTGTGGGA CAGTAAATTT TTTTAAAAAA AAGCTTTTGC CTGCTCTTGG AAGACAATAT 001440 001441 TGTGTTCAAT ATAGTGCAGT GCTCCACAGC TTGTAAAATC AACTATGTGG CACAAATCTG AAGACGTCTT CAAAAGATAT 001520 001521 ATGGCAAGAA AGATATGTTG CCGGCTTTAG TCATCTTTGC CATTTCTCTT ATGGAATTTC ACTATAGTGG CTGGACATGT 001600 001601 GCAACCCACA TCCTGTCTGG CCTTAATGTG ATTTTTCTAC AAAAGGAGAG GAGGACAAAA GTAAAAGCAA AATATGCTTT 001680 001681 ACAATGAAAA ATGCAACCCT CAGCCACTGG GATAAAATTA CATTGACAGT GGGGGAGTTA TTTTCTTCCT TCAAAGAACG 001760 001761 ATGTTTGATG TTCCAACTAG ACTCTATGGT GATGAAGCTC ATAATTTGGG AGCTGAATCA GATTCGAATT TAGAAAAGGG 001840 001841 GTTTCAGACG TTGCTTAGCA GGGTGATTTT AGGGGTTAAC ATATGAATAG AGATTACATT ATAACTCATC TGCCCTGTGT 001920 001921 TTGTTGGACA CAGCTTATAT GACCTATTCC TGATGGTTGC TCATAGAAGG ATATTTAAAT TCTGTTGTAA TTCTTCCTTA 002000 002001 TAAAATCTGT GACATTCTAA TAGATAGAAA ATGTTTAAAT CTTGTCTAGT TTCTGCTTCG TTTCCTTCTT TATGTTGATT 002080 002081 TCTTCCTATT TATCTCTTTT GTGCATCACA CATATTTCAC TATAAACTCG ATTTTTGTGG GTGAAAGGCC AC |
Predicted Small Protein
Name | NONHSAT027140_smProtein_884:1171 |
Length | 96 |
Molecular weight | 10521.0181 |
Aromaticity | 0.0736842105263 |
Instability index | 46.8378947368 |
Isoelectric point | 9.35247802734 |
Runs | 10 |
Runs residual | 0.0237878159967 |
Runs probability | 0.045627980922 |
Amino acid sequence | MGAGASCFSSSSYSTDLRLLLSPRKTASSSSWPFTKTHHSLLSLSRALSMVTSKVCAFSK ENEDILPCCCKHALRQEITKALWKTGISDCRYDRK |
Secondary structure | LLLLEEELLLLLLLLLHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHEEELLL LLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |