Difference between revisions of "NONHSAT028086"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGGCACATAGGCGGATGCGGCTCCCTATATACAACTCGGTCACCATGGGGATGGGCCGGGGCCTTTTCCTGTTGGTCCAGACCCCCAATCTGCCCAGAGAAGCCATGACAGGAGACTGGTGATTGGTGCAAGCGACGTGGGATGAGGTAATCTCTCCCCCACCCCTTTTTCTCTAGCATCCGTAGACTGTTTGCATCCTTTAGACAAAGAGACCGTGCAGAAGCAGTCGGCCGAGCATCCATTATGGGGCGGGGTTGGGGAGGGGCGGAAGGAGAAGAAAGGGGACTGGGGTTAGAAGACTTTCTGTTGCTTAAACCTCAAACTGCAGTTAAAATTATCTATGTGAGGTTTTTTCCCCCTACCCTTAATAACAATTTATGTTTAGATTAAATATTTAAAGGAAAATGACTGCCAGCCCCTCCCTCGTAGTATATTAAACTCGACTACATTTTGTTAGGGTTCAACATCTCTAATTGCTTTAAACGTAAAGTGGGAGGGAAAATCGGCATGATGCTCGAAATGGCCTGGGTATATGTGATTTTTTTAATTTAAAAAAAGATTTAGCCATACGGTCATTCCAAATGGTTTCTCAGGTTCAACTAACTTATTTTCAGAGCTTCTTCTGCAGGCACACGCACACCCGAATAGCTAAACAAAACTGGAAGATGGAAAGAATAACCATATTAAATAAAGAAGCGAACAAATAGTTCTAACATGGCAATAATCAAGAGCAAGTGAACGTAGAGTAGTTATAATGGTTTACTAGAGGTATTCTTTTATGAGAAGTCTATGTAACACATTTTGTATGGTACATTGTCCTTTGGAATGAATCATCTTTCCTGATAGAAAATTGGGAAAATACAAGGAGAAATAATTGAGCTCAGAAGTTAGTACTACATGTGTGCAGTTACATATCTGAATTGGACTTTTGTCTGGAAAGTAACAAGCAAAATAATAGTAATAACCAATACACCAAATTAAAAAGAAGAAGAGAATAATATAATGTAAAAAGAATTTTGCAATGTCGCCTCCATCCACAGACAACTGTGAAACATCAGCTCAATAAACGCATTTCCTTTTTATGTAGTTCTTATGTCAATTTGGTAAATATCCTCCTGCGAGTGGGCTTCTAACTGTGGGAATTTTAGCCGGCCTCACACCCTTGCTGTTCAGCTAGAGACTCTGGTGGTTGCTCAGTTGTCCCTTGGGACAAAAAGGCTTTGCTTTCACCCCTAGGAAATAAATTGGAGTAAAATTATCTTGATATTTAGGAAGCCTCCATTCTCAGCAACGATCCGGAGTAAGTCACTGGACTTCGTACCACTGGATGTTGGTGATGAAATTTCAGAGGTAAA</dnaseq>| | sequence = <dnaseq>CGGCACATAGGCGGATGCGGCTCCCTATATACAACTCGGTCACCATGGGGATGGGCCGGGGCCTTTTCCTGTTGGTCCAGACCCCCAATCTGCCCAGAGAAGCCATGACAGGAGACTGGTGATTGGTGCAAGCGACGTGGGATGAGGTAATCTCTCCCCCACCCCTTTTTCTCTAGCATCCGTAGACTGTTTGCATCCTTTAGACAAAGAGACCGTGCAGAAGCAGTCGGCCGAGCATCCATTATGGGGCGGGGTTGGGGAGGGGCGGAAGGAGAAGAAAGGGGACTGGGGTTAGAAGACTTTCTGTTGCTTAAACCTCAAACTGCAGTTAAAATTATCTATGTGAGGTTTTTTCCCCCTACCCTTAATAACAATTTATGTTTAGATTAAATATTTAAAGGAAAATGACTGCCAGCCCCTCCCTCGTAGTATATTAAACTCGACTACATTTTGTTAGGGTTCAACATCTCTAATTGCTTTAAACGTAAAGTGGGAGGGAAAATCGGCATGATGCTCGAAATGGCCTGGGTATATGTGATTTTTTTAATTTAAAAAAAGATTTAGCCATACGGTCATTCCAAATGGTTTCTCAGGTTCAACTAACTTATTTTCAGAGCTTCTTCTGCAGGCACACGCACACCCGAATAGCTAAACAAAACTGGAAGATGGAAAGAATAACCATATTAAATAAAGAAGCGAACAAATAGTTCTAACATGGCAATAATCAAGAGCAAGTGAACGTAGAGTAGTTATAATGGTTTACTAGAGGTATTCTTTTATGAGAAGTCTATGTAACACATTTTGTATGGTACATTGTCCTTTGGAATGAATCATCTTTCCTGATAGAAAATTGGGAAAATACAAGGAGAAATAATTGAGCTCAGAAGTTAGTACTACATGTGTGCAGTTACATATCTGAATTGGACTTTTGTCTGGAAAGTAACAAGCAAAATAATAGTAATAACCAATACACCAAATTAAAAAGAAGAAGAGAATAATATAATGTAAAAAGAATTTTGCAATGTCGCCTCCATCCACAGACAACTGTGAAACATCAGCTCAATAAACGCATTTCCTTTTTATGTAGTTCTTATGTCAATTTGGTAAATATCCTCCTGCGAGTGGGCTTCTAACTGTGGGAATTTTAGCCGGCCTCACACCCTTGCTGTTCAGCTAGAGACTCTGGTGGTTGCTCAGTTGTCCCTTGGGACAAAAAGGCTTTGCTTTCACCCCTAGGAAATAAATTGGAGTAAAATTATCTTGATATTTAGGAAGCCTCCATTCTCAGCAACGATCCGGAGTAAGTCACTGGACTTCGTACCACTGGATGTTGGTGATGAAATTTCAGAGGTAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG011087]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:59, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT028086 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1355 nt |
| Genomic location |
chr12+:49582863..49584217 |
| Exon number |
1 |
| Exons |
49582863..49584217 |
| Genome context |
|
| Sequence |
000001 CGGCACATAG GCGGATGCGG CTCCCTATAT ACAACTCGGT CACCATGGGG ATGGGCCGGG GCCTTTTCCT GTTGGTCCAG 000080
000081 ACCCCCAATC TGCCCAGAGA AGCCATGACA GGAGACTGGT GATTGGTGCA AGCGACGTGG GATGAGGTAA TCTCTCCCCC 000160 000161 ACCCCTTTTT CTCTAGCATC CGTAGACTGT TTGCATCCTT TAGACAAAGA GACCGTGCAG AAGCAGTCGG CCGAGCATCC 000240 000241 ATTATGGGGC GGGGTTGGGG AGGGGCGGAA GGAGAAGAAA GGGGACTGGG GTTAGAAGAC TTTCTGTTGC TTAAACCTCA 000320 000321 AACTGCAGTT AAAATTATCT ATGTGAGGTT TTTTCCCCCT ACCCTTAATA ACAATTTATG TTTAGATTAA ATATTTAAAG 000400 000401 GAAAATGACT GCCAGCCCCT CCCTCGTAGT ATATTAAACT CGACTACATT TTGTTAGGGT TCAACATCTC TAATTGCTTT 000480 000481 AAACGTAAAG TGGGAGGGAA AATCGGCATG ATGCTCGAAA TGGCCTGGGT ATATGTGATT TTTTTAATTT AAAAAAAGAT 000560 000561 TTAGCCATAC GGTCATTCCA AATGGTTTCT CAGGTTCAAC TAACTTATTT TCAGAGCTTC TTCTGCAGGC ACACGCACAC 000640 000641 CCGAATAGCT AAACAAAACT GGAAGATGGA AAGAATAACC ATATTAAATA AAGAAGCGAA CAAATAGTTC TAACATGGCA 000720 000721 ATAATCAAGA GCAAGTGAAC GTAGAGTAGT TATAATGGTT TACTAGAGGT ATTCTTTTAT GAGAAGTCTA TGTAACACAT 000800 000801 TTTGTATGGT ACATTGTCCT TTGGAATGAA TCATCTTTCC TGATAGAAAA TTGGGAAAAT ACAAGGAGAA ATAATTGAGC 000880 000881 TCAGAAGTTA GTACTACATG TGTGCAGTTA CATATCTGAA TTGGACTTTT GTCTGGAAAG TAACAAGCAA AATAATAGTA 000960 000961 ATAACCAATA CACCAAATTA AAAAGAAGAA GAGAATAATA TAATGTAAAA AGAATTTTGC AATGTCGCCT CCATCCACAG 001040 001041 ACAACTGTGA AACATCAGCT CAATAAACGC ATTTCCTTTT TATGTAGTTC TTATGTCAAT TTGGTAAATA TCCTCCTGCG 001120 001121 AGTGGGCTTC TAACTGTGGG AATTTTAGCC GGCCTCACAC CCTTGCTGTT CAGCTAGAGA CTCTGGTGGT TGCTCAGTTG 001200 001201 TCCCTTGGGA CAAAAAGGCT TTGCTTTCAC CCCTAGGAAA TAAATTGGAG TAAAATTATC TTGATATTTA GGAAGCCTCC 001280 001281 ATTCTCAGCA ACGATCCGGA GTAAGTCACT GGACTTCGTA CCACTGGATG TTGGTGATGA AATTTCAGAG GTAAA |
Predicted Small Protein
| Name | NONHSAT028086_smProtein_581:706 |
| Length | 42 |
| Molecular weight | 5027.8082 |
| Aromaticity | 0.121951219512 |
| Instability index | 51.787804878 |
| Isoelectric point | 10.182434082 |
| Runs | 8 |
| Runs residual | 0.0191530749663 |
| Runs probability | 0.0472972972974 |
| Amino acid sequence | MVSQVQLTYFQSFFCRHTHTRIAKQNWKMERITILNKEANK |
| Secondary structure | LLLEEEEHHHHHHLLLLLHHHHHHHHHHHHHEEEHHHHHLL |
| PRMN | - |
| PiMo | - |
