Difference between revisions of "NONHSAT028507"
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sequence = <dnaseq>AGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACA</dnaseq>| | sequence = <dnaseq>AGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG011264]] | + | [[Category:Intergenic]][[Category:NONHSAG011264]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:02, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT028507 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
918 nt |
| Genomic location |
chr12-:54356092..54368740 |
| Exon number |
6 |
| Exons |
54356092..54357908,54359748..54359871,54360060..54360161,54361053..54361178,54362401..54362540,54368682..54368740 |
| Genome context |
|
| Sequence |
000001 AGGCGAGAGC CGCGGCTGAC AGGGTCTGGG ACAGAAGGAA AGCCCTCCAG CCTCCAGGCC CTGCCTTCTG CCTGCACATT 000080
000081 CTGCCCTGAT TTCCGGAACC TGGAAGCCTA GGCAGGCAGT GGGGAACTCT GACTCGCCTG TGCTCTGGAG CTTGATCCGA 000160 000161 AAGCTTCCAC AGTGAGGACT GCTCCGTGGG GGTAAGAGAG CACCAGGCAC TGAGGCCTGG GAGTTCCACA GACCAACACC 000240 000241 CCTGCTCCTG GCGGCTCCCA CCCGGGACTT AGACCCTCAG GTCCCTAATA TCCCGGAGGT GCTCTCAATC AGAAAGGTCC 000320 000321 TGCTCCGCTT CGCAGTGGAA TGGAACGGAT TTAGAAGCCT GCAGTAGGGG AGTGGGGAGT GGAGAGAGGG AGCCCAGAGT 000400 000401 TACAGACGGC GGCGAGAGGA AGGAGGGGCG TCTTTATTTT TTTAAGGCCC CAAAGAGTCT GATGTTTACA AGACCAGAAA 000480 000481 TGCCACGGCC GCGTCCTGGC AGAGAAAAGG CTGAAATGGA GGACCGGCGC CTTCCTTATA AGCTCGTTGG GGCCTAAGCC 000560 000561 AGTACCGACC TGGTAGAAAA AGCAACCACG AAGCTAGAGA GAGAGCCAGA GGAGGGAAGA GAGCGCCAGA CGAAGGTGAA 000640 000641 AGCGAACCAC GCAGAGAAAT GCAGGCAAGG GAGCAAGGCG GCAGTTCCCG GAACAAACGT GGCAGAGGGC AAGACGGGCA 000720 000721 CTCACAGACA GAGGTTTATG TATTTTTATT TTTTAAAATC TGATTTGGTG TTCCATGAGG AAAAGGGAAA ATCTAGGGAA 000800 000801 CGGGAGTACA GAGAGAATAA TCCGGGTCCT AGCTCGCCAC ATGAACGCCC AGAGAACGCT GGAAAAACCT GAGCGGGTGC 000880 000881 CGGGGCAGCA CCCGGCTCGG GTCAGCCACT GCCCCACA |
Predicted Small Protein
| Name | NONHSAT028507_smProtein_737:871 |
| Length | 45 |
| Molecular weight | 5258.708 |
| Aromaticity | 0.136363636364 |
| Instability index | 49.2025 |
| Isoelectric point | 6.72015380859 |
| Runs | 7 |
| Runs residual | 0.00401069518717 |
| Runs probability | 0.0353294470942 |
| Amino acid sequence | MYFYFLKSDLVFHEEKGKSREREYRENNPGPSSPHERPENAGKT |
| Secondary structure | LEEEEELLLEEEELLLLLLHHHHHHLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
