Difference between revisions of "NONHSAT028844"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCACAAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGTAAGATTTGAAAAGGATTTCAGGATCTTATGAAGCACCTTTATACAGAGTGGAACTGtttatttccataggtttttggggaacaggtggtattttggttatacaagtaagttctctagtggtgatttttgagattttggtgcacctgtcacccaagcagtatacactgaacccaatTCTTAGTAGTGGTAGAATCCCGTTGAAAGTAACAGAAGTAGCTAGGTTggtggctcacacctgttatcccagcacactggaaggccaaggcagatggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaataccaaaaatatatagcagggcatggtggtaacgctcctgtaatcccagctactaaggtggctgaggcacggcaattgcttgaacctgggagacggacattacattgagccgagattgcaccactgcactccagcctgggcgacagagcaaga</dnaseq>| | sequence = <dnaseq>GTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCACAAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGTAAGATTTGAAAAGGATTTCAGGATCTTATGAAGCACCTTTATACAGAGTGGAACTGtttatttccataggtttttggggaacaggtggtattttggttatacaagtaagttctctagtggtgatttttgagattttggtgcacctgtcacccaagcagtatacactgaacccaatTCTTAGTAGTGGTAGAATCCCGTTGAAAGTAACAGAAGTAGCTAGGTTggtggctcacacctgttatcccagcacactggaaggccaaggcagatggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaataccaaaaatatatagcagggcatggtggtaacgctcctgtaatcccagctactaaggtggctgaggcacggcaattgcttgaacctgggagacggacattacattgagccgagattgcaccactgcactccagcctgggcgacagagcaaga</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG011394]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:03, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT028844 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
768 nt |
| Genomic location |
chr12-:57107653..57119085 |
| Exon number |
4 |
| Exons |
57107653..57108223,57108386..57108471,57118236..57118307,57119047..57119085 |
| Genome context |
|
| Sequence |
000001 GTCTTTCTGC CGCCATCTTG GTTCCGCGTT CCCTGCACAA AATGCCCGGC GAAGCCACAG AAACCGTCCC TGCTACAGAG 000080
000081 CAGGAGTTGC CGCAGCCCCA GGCTGAGACA GGGTCTGGAA CAGAATCTGA CAGTGATGAA TCAGTACCAG AGCTTGAAGA 000160 000161 ACAGGATTCC ACCCAGGCAA CCACACAACA AGCCCAGCTG GCGGCAGCAG CTGAAATTGA TGAAGAACCA GTCAGTAAAG 000240 000241 CAAAACAGAG TCGGAGTGAA AAGAAGGCAC GGAAGGTAAG ATTTGAAAAG GATTTCAGGA TCTTATGAAG CACCTTTATA 000320 000321 CAGAGTGGAA CTGtttattt ccataggttt ttggggaaca ggtggtattt tggttataca agtaagttct ctagtggtga 000400 000401 tttttgagat tttggtgcac ctgtcaccca agcagtatac actgaaccca atTCTTAGTA GTGGTAGAAT CCCGTTGAAA 000480 000481 GTAACAGAAG TAGCTAGGTT ggtggctcac acctgttatc ccagcacact ggaaggccaa ggcagatgga tcacttgagg 000560 000561 tcaggagttc aagaccagcc tggccaacat ggcgaaaccc catctctact aaaaatacca aaaatatata gcagggcatg 000640 000641 gtggtaacgc tcctgtaatc ccagctacta aggtggctga ggcacggcaa ttgcttgaac ctgggagacg gacattacat 000720 000721 tgagccgaga ttgcaccact gcactccagc ctgggcgaca gagcaaga |
Predicted Small Protein
| Name | NONHSAT028844_smProtein_41:307 |
| Length | 89 |
| Molecular weight | 9619.2665 |
| Aromaticity | 0.0227272727273 |
| Instability index | 85.3306818182 |
| Isoelectric point | 4.36444091797 |
| Runs | 11 |
| Runs residual | 0.00636363636364 |
| Runs probability | 0.016107016107 |
| Amino acid sequence | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID EEPVSKAKQSRSEKKARKVRFEKDFRIL |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLHHHHHHHHHHHHHHHHL LLLLLHHHLLHHHHHHHHHHHHHLLEEL |
| PRMN | - |
| PiMo | - |
