Difference between revisions of "NONHSAT028961"

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sequence = <dnaseq>cgatctcttgacctcatgatccacccacatcagactcccaaagtgctaggattacaggcgtgagccgctgcacctggcatttctttttttttaaaaaaagagacaaggtcttgcttgcccaggctgatctagaactcctgggctcaagcagtcctctcacctcagcatcccaaagtgctggaattGTTGGCCTTTATTCCCTATACTTCCTATTTTGAGCCACTAAGCAGTAACCATTCAACTAAGATATCTTTGAAAATGACTGCTACCTTATATCCCTTCTCACCTTAGGCCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGCCCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCATGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCT</dnaseq>|
 
sequence = <dnaseq>cgatctcttgacctcatgatccacccacatcagactcccaaagtgctaggattacaggcgtgagccgctgcacctggcatttctttttttttaaaaaaagagacaaggtcttgcttgcccaggctgatctagaactcctgggctcaagcagtcctctcacctcagcatcccaaagtgctggaattGTTGGCCTTTATTCCCTATACTTCCTATTTTGAGCCACTAAGCAGTAACCATTCAACTAAGATATCTTTGAAAATGACTGCTACCTTATATCCCTTCTCACCTTAGGCCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGCCCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCATGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCT</dnaseq>|
 
}}
 
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[[Category:Sense]][[Category:NONHSAG011450]]
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[[Category:Sense]][[Category:NONHSAG011450]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 21:04, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT028961

Source

NONCODE4.0

Same with

,

Classification

sense

Length

685 nt

Genomic location

chr12-:58142194..58143578

Exon number

3

Exons

58142194..58142400,58142965..58143100,58143237..58143578

Genome context

Sequence
000001 cgatctcttg acctcatgat ccacccacat cagactccca aagtgctagg attacaggcg tgagccgctg cacctggcat 000080
000081 ttcttttttt ttaaaaaaag agacaaggtc ttgcttgccc aggctgatct agaactcctg ggctcaagca gtcctctcac 000160
000161 ctcagcatcc caaagtgctg gaattGTTGG CCTTTATTCC CTATACTTCC TATTTTGAGC CACTAAGCAG TAACCATTCA 000240
000241 ACTAAGATAT CTTTGAAAAT GACTGCTACC TTATATCCCT TCTCACCTTA GGCCTCTCTT CTGTGGAAAC TCTGAAGCCG 000320
000321 ACCAGTTGGG CAAAATCTTT GACCTGATTG GGCTGCCTCC AGAGGATGAC TGGCCTCGAG ATGTATCCCT GCCCCGTGGA 000400
000401 GCCTTTCCCC CCAGAGGGCC CCGCCCAGTG CAGTCGGTGG TACCTGAGAT GGAGGAGTCG GGAGCACAGC TGCTGCTGGA 000480
000481 AATGCTGACT TTTAACCCAC ACAAGCGAAT CTCTGCCTTT CGAGCTCTGC AGCACTCTTA TCTACATAAG GATGAAGGTA 000560
000561 ATCCGGAGTG AGCAATGGAG TGGCTGCCAT GGAAGGAAGA AAAGCTGCCA TTTCCCTTCT GGACACTGAG AGGGCAATCT 000640
000641 TTGCCTTTAT CTCTGAGGCT ATGGAGGGTC CTCCTCCATC TTTCT
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Predicted Small Protein

Name NONHSAT028961_smProtein_365:487
Length 41
Molecular weight 4818.565
Aromaticity 0.15
Instability index 116.4475
Isoelectric point 7.62664794922
Runs 8
Runs residual 0.0219758064516
Runs probability 0.0340818759936
Amino acid sequence MTGLEMYPCPVEPFPPEGPAQCSRWYLRWRSREHSCCWKC
Secondary structure LLLLEELLLLLLLLLLLLLLHHHHHHEELLLLLLLEEELL
PRMN -
PiMo -