Difference between revisions of "NONHSAT029454"

From LncRNAWiki
Jump to: navigation, search
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>ACAGGAATGCCTTATCACCACCTTCCAGGAAGCCTACTTTGTTTCAGAAAGTTTTGAAGAAGCCAAAGAAAAGATGAGATGGGATTTTTCTACTTACCCATATGCATGATGGAATATGGTGACTTTATAACTTCTGAGGTACAGATTGGCAATATGGCCCGTACAAGCACTGTTTGGGGTGCTGTTGTTACAGAAACACAACTGATGTCTCCTAGGGGTGGTAAGACAACAGGATAAGTGAATTCTTTATCTAACAGGTAATAACTCAAATGCTTCGTCAAAGGCTGGTTTTCCAGGCCTGTTGGAGACAGACCACTTGGATAAGAAACAGTCAAGAGACTTTATCATCTGTTTCTCCCATGTCCAACtgctgtggaatgaactgggtgcctccagaattcccaactgaagccctaacttgcagtgtgactgtatttggaaataggacctgcaggaagtaattaagcctaagtgaggtcataagggtagggcgctaatccgataagtctggtgccttatgagaagaggaagagacaccagagctgtctttctaccatgtgaggacacagcgagGCTTGTTggtgttgattacatggctctaggaactgtctgagaatcaaggaatttctacaactgttctcgaaaaagctgtcatcttttgtagcctcaagactaatttagatggaaatcagatggaaagcctgatgctgcagtttgttgaattataaggtaggttgaatttacagttttaccatttgtttttcaaaaaattg</dnaseq>|
 
sequence = <dnaseq>ACAGGAATGCCTTATCACCACCTTCCAGGAAGCCTACTTTGTTTCAGAAAGTTTTGAAGAAGCCAAAGAAAAGATGAGATGGGATTTTTCTACTTACCCATATGCATGATGGAATATGGTGACTTTATAACTTCTGAGGTACAGATTGGCAATATGGCCCGTACAAGCACTGTTTGGGGTGCTGTTGTTACAGAAACACAACTGATGTCTCCTAGGGGTGGTAAGACAACAGGATAAGTGAATTCTTTATCTAACAGGTAATAACTCAAATGCTTCGTCAAAGGCTGGTTTTCCAGGCCTGTTGGAGACAGACCACTTGGATAAGAAACAGTCAAGAGACTTTATCATCTGTTTCTCCCATGTCCAACtgctgtggaatgaactgggtgcctccagaattcccaactgaagccctaacttgcagtgtgactgtatttggaaataggacctgcaggaagtaattaagcctaagtgaggtcataagggtagggcgctaatccgataagtctggtgccttatgagaagaggaagagacaccagagctgtctttctaccatgtgaggacacagcgagGCTTGTTggtgttgattacatggctctaggaactgtctgagaatcaaggaatttctacaactgttctcgaaaaagctgtcatcttttgtagcctcaagactaatttagatggaaatcagatggaaagcctgatgctgcagtttgttgaattataaggtaggttgaatttacagttttaccatttgtttttcaaaaaattg</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG011683]]
+
[[Category:Sense]][[Category:NONHSAG011683]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 21:06, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT029454

Source

NONCODE4.0

Same with

,

Classification

sense

Length

773 nt

Genomic location

chr12+:72425094..72556932

Exon number

6

Exons

72425094..72425171,72436605..72436664,72441336..72441437,72467373..72467499,72469260..72469488,72556756..72556932

Genome context

Sequence
000001 ACAGGAATGC CTTATCACCA CCTTCCAGGA AGCCTACTTT GTTTCAGAAA GTTTTGAAGA AGCCAAAGAA AAGATGAGAT 000080
000081 GGGATTTTTC TACTTACCCA TATGCATGAT GGAATATGGT GACTTTATAA CTTCTGAGGT ACAGATTGGC AATATGGCCC 000160
000161 GTACAAGCAC TGTTTGGGGT GCTGTTGTTA CAGAAACACA ACTGATGTCT CCTAGGGGTG GTAAGACAAC AGGATAAGTG 000240
000241 AATTCTTTAT CTAACAGGTA ATAACTCAAA TGCTTCGTCA AAGGCTGGTT TTCCAGGCCT GTTGGAGACA GACCACTTGG 000320
000321 ATAAGAAACA GTCAAGAGAC TTTATCATCT GTTTCTCCCA TGTCCAACtg ctgtggaatg aactgggtgc ctccagaatt 000400
000401 cccaactgaa gccctaactt gcagtgtgac tgtatttgga aataggacct gcaggaagta attaagccta agtgaggtca 000480
000481 taagggtagg gcgctaatcc gataagtctg gtgccttatg agaagaggaa gagacaccag agctgtcttt ctaccatgtg 000560
000561 aggacacagc gagGCTTGTT ggtgttgatt acatggctct aggaactgtc tgagaatcaa ggaatttcta caactgttct 000640
000641 cgaaaaagct gtcatctttt gtagcctcaa gactaattta gatggaaatc agatggaaag cctgatgctg cagtttgttg 000720
000721 aattataagg taggttgaat ttacagtttt accatttgtt tttcaaaaaa ttg
[back to top]

Predicted Small Protein

Name NONHSAT029454_smProtein_269:460
Length 64
Molecular weight 7285.3779
Aromaticity 0.0952380952381
Instability index 60.0841269841
Isoelectric point 9.13299560547
Runs 12
Runs residual 0.0455134434726
Runs probability 0.0261511511511
Amino acid sequence MLRQRLVFQACWRQTTWIRNSQETLSSVSPMSNCCGMNWVPPEFPTEALTCSVTVFGNRT
CRK
Secondary structure LLLEEEHHHHHHLLLEEEELLLEEEEEELLLLLLLLLLLLLLLLLLLLEEEEEEEEELEE
EEL
PRMN -
PiMo -