Difference between revisions of "NONHSAT030796"
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sequence = <dnaseq>GAGTGCTGTCTAGAAGGTTTTGGAGTGTGGATGCTGGTCCAAGAAAGAAGATGTGCCCTGGCCTGCTGGAAAGATTGTGAATTCTAGAGATAGAGCCGTTAGCATCCATCTCCTCCCTGTAACTCTTAGGAAATGCATCAAGGACCATTATAGAAAGGATCCCCTGACCTAAGGATGAAATCGACCTAGGGTTAATCATGACAGCTGCATCAGTTGTATTGGATGCAAGTCAACTCTGGAGTCCTCATCCCTTGAATGGACTTGTCAGCTACCTCCCCAGGAGGAGTTCAGAAGCTTCTGTTGGCCATCACTTGAGTAGATGACAAGCTGTAAGGTATCTGCTGCTAACGTGGCTGCTTCTCCGAGAGCACATTGAGGTCCAGACAGATCCAAACCTTGGCCCTAAAAAATGTGTGCTGTAAAGTTACTTGATGtatatttattataattatttatGGTTGCATTTAACAAACTTTTCATTCAATCTGATGCTATTTACACCATGCTGTGTAAAGGAAGCTCACTAAAGGAAAAAAGTCACACCAATAAATAACCTTCATCTAA</dnaseq>| | sequence = <dnaseq>GAGTGCTGTCTAGAAGGTTTTGGAGTGTGGATGCTGGTCCAAGAAAGAAGATGTGCCCTGGCCTGCTGGAAAGATTGTGAATTCTAGAGATAGAGCCGTTAGCATCCATCTCCTCCCTGTAACTCTTAGGAAATGCATCAAGGACCATTATAGAAAGGATCCCCTGACCTAAGGATGAAATCGACCTAGGGTTAATCATGACAGCTGCATCAGTTGTATTGGATGCAAGTCAACTCTGGAGTCCTCATCCCTTGAATGGACTTGTCAGCTACCTCCCCAGGAGGAGTTCAGAAGCTTCTGTTGGCCATCACTTGAGTAGATGACAAGCTGTAAGGTATCTGCTGCTAACGTGGCTGCTTCTCCGAGAGCACATTGAGGTCCAGACAGATCCAAACCTTGGCCCTAAAAAATGTGTGCTGTAAAGTTACTTGATGtatatttattataattatttatGGTTGCATTTAACAAACTTTTCATTCAATCTGATGCTATTTACACCATGCTGTGTAAAGGAAGCTCACTAAAGGAAAAAAGTCACACCAATAAATAACCTTCATCTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG012331]] | + | [[Category:Sense]][[Category:NONHSAG012331]][[Category:Transcripts]] |
Latest revision as of 21:12, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT030796 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
564 nt |
| Genomic location |
chr12-:112598126..112598906 |
| Exon number |
2 |
| Exons |
112598126..112598448,112598666..112598906 |
| Genome context |
|
| Sequence |
000001 GAGTGCTGTC TAGAAGGTTT TGGAGTGTGG ATGCTGGTCC AAGAAAGAAG ATGTGCCCTG GCCTGCTGGA AAGATTGTGA 000080
000081 ATTCTAGAGA TAGAGCCGTT AGCATCCATC TCCTCCCTGT AACTCTTAGG AAATGCATCA AGGACCATTA TAGAAAGGAT 000160 000161 CCCCTGACCT AAGGATGAAA TCGACCTAGG GTTAATCATG ACAGCTGCAT CAGTTGTATT GGATGCAAGT CAACTCTGGA 000240 000241 GTCCTCATCC CTTGAATGGA CTTGTCAGCT ACCTCCCCAG GAGGAGTTCA GAAGCTTCTG TTGGCCATCA CTTGAGTAGA 000320 000321 TGACAAGCTG TAAGGTATCT GCTGCTAACG TGGCTGCTTC TCCGAGAGCA CATTGAGGTC CAGACAGATC CAAACCTTGG 000400 000401 CCCTAAAAAA TGTGTGCTGT AAAGTTACTT GATGtatatt tattataatt atttatGGTT GCATTTAACA AACTTTTCAT 000480 000481 TCAATCTGAT GCTATTTACA CCATGCTGTG TAAAGGAAGC TCACTAAAGG AAAAAAGTCA CACCAATAAA TAACCTTCAT 000560 000561 CTAA |
Predicted Small Protein
| Name | NONHSAT030796_smProtein_197:322 |
| Length | 42 |
| Molecular weight | 4427.9543 |
| Aromaticity | 0.0487804878049 |
| Instability index | 65.443902439 |
| Isoelectric point | 8.55157470703 |
| Runs | 9 |
| Runs residual | 0.0435433188688 |
| Runs probability | 0.0340438477693 |
| Amino acid sequence | MTAASVVLDASQLWSPHPLNGLVSYLPRRSSEASVGHHLSR |
| Secondary structure | LLLLEEELLHHHLLLLLLLLLLEEELLLLLLLHHHLLLLLL |
| PRMN | - |
| PiMo | - |
