Difference between revisions of "NONHSAT031812"

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sequence = <dnaseq>tgtgatcacaggcaactcaggaacagctctccagccccaggacttctgctggaaccgctgggagttggaagctttcttcccactgaggggcaaaccttctaggtatctgaagatgttgaagaccatttCCTGGAACAGCAGAGGTAAATGCCCAGAGGATGAGAACACATAGCCATTAGGAGAGCCTGAAAGTTCAGTGTGACTGAAAGATGAAGTTCAAGAGAAGGGACAAACTGCAAAACACAAGCTGGAGAGTTTTAGAGAGACTGTGGAATGGAATGACTCTCCAGAGCTGCAGATTGAAGGCATATTTTCATCTGACTTTGGTGATTATGTTTCCAATCTCTCTGGGAATAAGatctcaatggcgggaacaccttcatggcccctttatagctggatgatcatttcctgttctctccaccatggccacctggtccaagccaccatcttcatgcacctggatacctgccataacctcagctgacctttcctgtgtccattcttgttcctttgggcccagtctcctcg</dnaseq>|
 
sequence = <dnaseq>tgtgatcacaggcaactcaggaacagctctccagccccaggacttctgctggaaccgctgggagttggaagctttcttcccactgaggggcaaaccttctaggtatctgaagatgttgaagaccatttCCTGGAACAGCAGAGGTAAATGCCCAGAGGATGAGAACACATAGCCATTAGGAGAGCCTGAAAGTTCAGTGTGACTGAAAGATGAAGTTCAAGAGAAGGGACAAACTGCAAAACACAAGCTGGAGAGTTTTAGAGAGACTGTGGAATGGAATGACTCTCCAGAGCTGCAGATTGAAGGCATATTTTCATCTGACTTTGGTGATTATGTTTCCAATCTCTCTGGGAATAAGatctcaatggcgggaacaccttcatggcccctttatagctggatgatcatttcctgttctctccaccatggccacctggtccaagccaccatcttcatgcacctggatacctgccataacctcagctgacctttcctgtgtccattcttgttcctttgggcccagtctcctcg</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG012695]]
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[[Category:Intergenic]][[Category:NONHSAG012695]][[Category:Transcripts]]

Latest revision as of 21:15, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT031812

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

531 nt

Genomic location

chr12-:127214381..127221472

Exon number

4

Exons

127214381..127214512,127215309..127215349,127216857..127216953,127221212..127221472

Genome context

Sequence
000001 tgtgatcaca ggcaactcag gaacagctct ccagccccag gacttctgct ggaaccgctg ggagttggaa gctttcttcc 000080
000081 cactgagggg caaaccttct aggtatctga agatgttgaa gaccatttCC TGGAACAGCA GAGGTAAATG CCCAGAGGAT 000160
000161 GAGAACACAT AGCCATTAGG AGAGCCTGAA AGTTCAGTGT GACTGAAAGA TGAAGTTCAA GAGAAGGGAC AAACTGCAAA 000240
000241 ACACAAGCTG GAGAGTTTTA GAGAGACTGT GGAATGGAAT GACTCTCCAG AGCTGCAGAT TGAAGGCATA TTTTCATCTG 000320
000321 ACTTTGGTGA TTATGTTTCC AATCTCTCTG GGAATAAGat ctcaatggcg ggaacacctt catggcccct ttatagctgg 000400
000401 atgatcattt cctgttctct ccaccatggc cacctggtcc aagccaccat cttcatgcac ctggatacct gccataacct 000480
000481 cagctgacct ttcctgtgtc cattcttgtt cctttgggcc cagtctcctc g
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Predicted Small Protein

Name NONHSAT031812_smProtein_209:403
Length 65
Molecular weight 7714.0826
Aromaticity 0.125
Instability index 52.978125
Isoelectric point 11.3283081055
Runs 11
Runs residual 0.02328125
Runs probability 0.0767773120715
Amino acid sequence MKFKRRDKLQNTSWRVLERLWNGMTLQSCRLKAYFHLTLVIMFPISLGIRSQWREHLHGP
FIAG
Secondary structure LLLLLHHHHLLLHHHHHHHHHHLLLHHHHHHHHHHHLEEEEEEELLLLLHHHHHHHHLLL
LLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
LLLL
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