Difference between revisions of "NONHSAT034477"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGAGAATGCGCGGGTCGAGTGCTGTAGTTCGATTTTTGCGTGTGTGCGTTGCTTGCGGCCTTTGTGCCTTTTTATTCTTTGCTTACCTTTATGATATAAAGACCTTATTTCTTACAAGGAGGAAAAGACCGCTGACTTCAGAAACAGCGGGAACCCCAGCTCGTCCCCGGTAATTCAAGAGGAAACGCTTGAGCAATTACTGATGTTGTAAACTGGGATCAGAAGACATACATGGTATCGTATCCCAGGCAAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAGAAGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTTACATGGTGAAACCCATCTCTACTGAACATACAAAAATTAGCTGGACATGATGGTTAGCTGCACCTCTACTCCACGTGTTCCTCCCTTCAGGTCCCAGGCTGATGGAGTAGCCTCTGTGTGTTTGGGATGTTGTCAGTCATAATGGTGGACACAAAAGAGATTATGACAAACCGTGTATTGTCTCCTACAATTTCTGCTCACAGAAGTGGACAACATCACTTCTTTCCACATTTCATTGACCAGAGCAAGTCATGTGACCAAGCCTGATTCAAAATAGGCTGGAGCAAGGAGGAGCAGCAAACATAACATTCCCAGTTTACAGCTGAGGAAATTAAGCTTCAAGTTGCCCAAGTTTATAGAATGAGTCAATGGCAGAGGTTGAACTCAGATGACAAAATTGGGGTCTGGACGTGTGCAAGGACTTTTCCAAAGTCAGCTGGAAAGGAGCTGCTTAGCTGAGAGGTTCTGGCTCCAGAGTCTCCTGTGAAGTTGCAGTCAAGATGTCTGCTGGGACCCCAGTCATTTGAAGCCCTGTCTGGGGCAGGAGAATCTAGGTCCAAAATGGCCGTTGCAGGAGTCCTTATCCACACCATGTGGGACCTCTTCATAGATGTTCGAGTGTCCTCATGGCATGGCCACTGGCTTTCCCCAAAGTAAGCAGTCCAAAAGAGGGTAAGACAGAGCCCACACTGTCTTTTATGAATTAGCCTTAGAAGTCTAACACGGTTACTTCCACCACATTCATTAGTCGTTAGGTACAGCTCACATTCATGGGGAGGAAAATCAGGGCCTGTCTTTAGATAGGAGATGTATCAAAGAATTTGTGGACATATTTTAAAATCACAGCACTACTCTTGATGTACTAAGTCAGTGACTCCCCCAGGAGTCTCACAGAGAATTGACTCCTTGCCCACCTATACTACCTTTGTGGGTAGAGACTCCAGTAGTGTGCTGGTTAATGTTCAACCAGTGGCTTTCTAGAAAACAAAATGTATGGATACATATATATGTTCTAAGTTTTACTGATATGAAGAATGTGTAGCACAGAATTTATAAATAATAAAATATACAGTATTATTTATTGTAAATTCCATAAAACCTGTTGTTTTTCACAAAAGGTTTTAGTTTATTTTTCCCAAATGCTTGTATTGGTAACATTTTCTGTATTACCTTTTTATGTCCAGACAATCAACAAAACTGAAAAAGCCCAGCCTTGTAGCATTTGCCAGTTATTGTGTAAATGTCCCCACTATGGTGGATTTCAGGTTACCACTATGATATCACAGAATGCAGAATTGGAAGGAGATTCACAGCAGCACCCCATTATACTATATTTTCACCATACAGATGCAGTCGATGTAAATTACCTGAGGAGCATAAATAATAATAAAATGAAGTTAAATAATTCGG</dnaseq>| | sequence = <dnaseq>GGAGAATGCGCGGGTCGAGTGCTGTAGTTCGATTTTTGCGTGTGTGCGTTGCTTGCGGCCTTTGTGCCTTTTTATTCTTTGCTTACCTTTATGATATAAAGACCTTATTTCTTACAAGGAGGAAAAGACCGCTGACTTCAGAAACAGCGGGAACCCCAGCTCGTCCCCGGTAATTCAAGAGGAAACGCTTGAGCAATTACTGATGTTGTAAACTGGGATCAGAAGACATACATGGTATCGTATCCCAGGCAAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAGAAGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCTTACATGGTGAAACCCATCTCTACTGAACATACAAAAATTAGCTGGACATGATGGTTAGCTGCACCTCTACTCCACGTGTTCCTCCCTTCAGGTCCCAGGCTGATGGAGTAGCCTCTGTGTGTTTGGGATGTTGTCAGTCATAATGGTGGACACAAAAGAGATTATGACAAACCGTGTATTGTCTCCTACAATTTCTGCTCACAGAAGTGGACAACATCACTTCTTTCCACATTTCATTGACCAGAGCAAGTCATGTGACCAAGCCTGATTCAAAATAGGCTGGAGCAAGGAGGAGCAGCAAACATAACATTCCCAGTTTACAGCTGAGGAAATTAAGCTTCAAGTTGCCCAAGTTTATAGAATGAGTCAATGGCAGAGGTTGAACTCAGATGACAAAATTGGGGTCTGGACGTGTGCAAGGACTTTTCCAAAGTCAGCTGGAAAGGAGCTGCTTAGCTGAGAGGTTCTGGCTCCAGAGTCTCCTGTGAAGTTGCAGTCAAGATGTCTGCTGGGACCCCAGTCATTTGAAGCCCTGTCTGGGGCAGGAGAATCTAGGTCCAAAATGGCCGTTGCAGGAGTCCTTATCCACACCATGTGGGACCTCTTCATAGATGTTCGAGTGTCCTCATGGCATGGCCACTGGCTTTCCCCAAAGTAAGCAGTCCAAAAGAGGGTAAGACAGAGCCCACACTGTCTTTTATGAATTAGCCTTAGAAGTCTAACACGGTTACTTCCACCACATTCATTAGTCGTTAGGTACAGCTCACATTCATGGGGAGGAAAATCAGGGCCTGTCTTTAGATAGGAGATGTATCAAAGAATTTGTGGACATATTTTAAAATCACAGCACTACTCTTGATGTACTAAGTCAGTGACTCCCCCAGGAGTCTCACAGAGAATTGACTCCTTGCCCACCTATACTACCTTTGTGGGTAGAGACTCCAGTAGTGTGCTGGTTAATGTTCAACCAGTGGCTTTCTAGAAAACAAAATGTATGGATACATATATATGTTCTAAGTTTTACTGATATGAAGAATGTGTAGCACAGAATTTATAAATAATAAAATATACAGTATTATTTATTGTAAATTCCATAAAACCTGTTGTTTTTCACAAAAGGTTTTAGTTTATTTTTCCCAAATGCTTGTATTGGTAACATTTTCTGTATTACCTTTTTATGTCCAGACAATCAACAAAACTGAAAAAGCCCAGCCTTGTAGCATTTGCCAGTTATTGTGTAAATGTCCCCACTATGGTGGATTTCAGGTTACCACTATGATATCACAGAATGCAGAATTGGAAGGAGATTCACAGCAGCACCCCATTATACTATATTTTCACCATACAGATGCAGTCGATGTAAATTACCTGAGGAGCATAAATAATAATAAAATGAAGTTAAATAATTCGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG013847]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:27, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT034477 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1753 nt |
| Genomic location |
chr13+:79980444..79997090 |
| Exon number |
6 |
| Exons |
79980444..79980612,79986817..79987042,79989246..79989499,79991970..79992051,79994895..79994950,79996122..79997090 |
| Genome context |
|
| Sequence |
000001 GGAGAATGCG CGGGTCGAGT GCTGTAGTTC GATTTTTGCG TGTGTGCGTT GCTTGCGGCC TTTGTGCCTT TTTATTCTTT 000080
000081 GCTTACCTTT ATGATATAAA GACCTTATTT CTTACAAGGA GGAAAAGACC GCTGACTTCA GAAACAGCGG GAACCCCAGC 000160 000161 TCGTCCCCGG TAATTCAAGA GGAAACGCTT GAGCAATTAC TGATGTTGTA AACTGGGATC AGAAGACATA CATGGTATCG 000240 000241 TATCCCAGGC AAGGCACAGT GGCTCACACC TGTAATCCCA GCACTTTGGG AGGCTGAAGA AGGCAGATCA CTTGAGGTCA 000320 000321 GGAGTTCGAG ACCAGCCTGG CTTACATGGT GAAACCCATC TCTACTGAAC ATACAAAAAT TAGCTGGACA TGATGGTTAG 000400 000401 CTGCACCTCT ACTCCACGTG TTCCTCCCTT CAGGTCCCAG GCTGATGGAG TAGCCTCTGT GTGTTTGGGA TGTTGTCAGT 000480 000481 CATAATGGTG GACACAAAAG AGATTATGAC AAACCGTGTA TTGTCTCCTA CAATTTCTGC TCACAGAAGT GGACAACATC 000560 000561 ACTTCTTTCC ACATTTCATT GACCAGAGCA AGTCATGTGA CCAAGCCTGA TTCAAAATAG GCTGGAGCAA GGAGGAGCAG 000640 000641 CAAACATAAC ATTCCCAGTT TACAGCTGAG GAAATTAAGC TTCAAGTTGC CCAAGTTTAT AGAATGAGTC AATGGCAGAG 000720 000721 GTTGAACTCA GATGACAAAA TTGGGGTCTG GACGTGTGCA AGGACTTTTC CAAAGTCAGC TGGAAAGGAG CTGCTTAGCT 000800 000801 GAGAGGTTCT GGCTCCAGAG TCTCCTGTGA AGTTGCAGTC AAGATGTCTG CTGGGACCCC AGTCATTTGA AGCCCTGTCT 000880 000881 GGGGCAGGAG AATCTAGGTC CAAAATGGCC GTTGCAGGAG TCCTTATCCA CACCATGTGG GACCTCTTCA TAGATGTTCG 000960 000961 AGTGTCCTCA TGGCATGGCC ACTGGCTTTC CCCAAAGTAA GCAGTCCAAA AGAGGGTAAG ACAGAGCCCA CACTGTCTTT 001040 001041 TATGAATTAG CCTTAGAAGT CTAACACGGT TACTTCCACC ACATTCATTA GTCGTTAGGT ACAGCTCACA TTCATGGGGA 001120 001121 GGAAAATCAG GGCCTGTCTT TAGATAGGAG ATGTATCAAA GAATTTGTGG ACATATTTTA AAATCACAGC ACTACTCTTG 001200 001201 ATGTACTAAG TCAGTGACTC CCCCAGGAGT CTCACAGAGA ATTGACTCCT TGCCCACCTA TACTACCTTT GTGGGTAGAG 001280 001281 ACTCCAGTAG TGTGCTGGTT AATGTTCAAC CAGTGGCTTT CTAGAAAACA AAATGTATGG ATACATATAT ATGTTCTAAG 001360 001361 TTTTACTGAT ATGAAGAATG TGTAGCACAG AATTTATAAA TAATAAAATA TACAGTATTA TTTATTGTAA ATTCCATAAA 001440 001441 ACCTGTTGTT TTTCACAAAA GGTTTTAGTT TATTTTTCCC AAATGCTTGT ATTGGTAACA TTTTCTGTAT TACCTTTTTA 001520 001521 TGTCCAGACA ATCAACAAAA CTGAAAAAGC CCAGCCTTGT AGCATTTGCC AGTTATTGTG TAAATGTCCC CACTATGGTG 001600 001601 GATTTCAGGT TACCACTATG ATATCACAGA ATGCAGAATT GGAAGGAGAT TCACAGCAGC ACCCCATTAT ACTATATTTT 001680 001681 CACCATACAG ATGCAGTCGA TGTAAATTAC CTGAGGAGCA TAAATAATAA TAAAATGAAG TTAAATAATT CGG |
Predicted Small Protein
| Name | NONHSAT034477_smProtein_5:172 |
| Length | 56 |
| Molecular weight | 6228.3901 |
| Aromaticity | 0.127272727273 |
| Instability index | 50.7218181818 |
| Isoelectric point | 10.8535766602 |
| Runs | 6 |
| Runs residual | 0.0424242424242 |
| Runs probability | 0.0241859506566 |
| Amino acid sequence | MRGSSAVVRFLRVCVACGLCAFLFFAYLYDIKTLFLTRRKRPLTSETAGTPARPR |
| Secondary structure | LLLLHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHEEELLLLLLLLLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii |
