Difference between revisions of "NONHSAT035050"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GCTGCAGTGAATTCTACAAAGAGGCTATGGGAAAGAAACCTGGAAAGTACCCTTGGCTGTGTACATTTGAGTAAAGAGAGCACTATAAAATCAAAAACCAATGAAATGGTTTCCAGAACACAGAACTATTAAGCTTAAGAAAAGGACAGAAGGAACTGAAGAGAGAGGAACTGTTTTGGAGCATCACACTTCCACCTCAGAAGAAATAAGGAAGGAAGGAGGAGGGTGTTCCCACGGCTCTTCAACCAGGCCGGCTCTTCAGCCTACATCCCCATCTCATCAAGTAAAAGGGATTTTTCAACTGGACCAACCAGATGGTTTAACAGTGCACTCCCACACCATTCAACTACGCAAGGGAGATACACTTAACATATGCAGTCGTATAACACCTACTAACATTTTCAAACATTAAACCTTTAAAAAAGAGTTCTAAAGAAATAGAAGCTTGAAGTATCATCTCTCAAGTATATAGACACTACTTCATGGTGTGGTAATATATGCATATAGAAGCTAGTAAACACCTCCAGGAGATGCAAAAGGAATTAGAACTGCCACAAGGTGCAAGCAAAACCTTGAGTTCTGTTTTTCCTCTTCTAATCCTTCACCCATCTGAGCTAAAGTCTAGACCTAAGGAGGCTACTAATTCAGGGATCGAGTAATCTGCCAAGCAAGAGTTTATTCAAGCACAGTTTGAAATAAAGGTTTCAAATGCATAGCCTGTCGATACTTTGGAAGGATTCTCATCATAACGAGTATGCAATTTGCTATAAAGAAGAATGCCCATtacggactaaatgtttatgtcctcctaaaattcatatgttgaaggcctaactctcaatgtgatgattatgtggagatggtgcctttgggaggtaactgggcttagatgtgggcgtgagggtggggcctcatggtgaaatttgtgcccttgtaagaaaaacacaccacaggttttcattcttcctctgccacatgaggccacagtaagaatgtgaccatctgctagccaggaggaaagtcctcactggaacccgcccataataacactccagtctggggcttttcagcctccagaaccatgag</dnaseq>| | sequence = <dnaseq>GCTGCAGTGAATTCTACAAAGAGGCTATGGGAAAGAAACCTGGAAAGTACCCTTGGCTGTGTACATTTGAGTAAAGAGAGCACTATAAAATCAAAAACCAATGAAATGGTTTCCAGAACACAGAACTATTAAGCTTAAGAAAAGGACAGAAGGAACTGAAGAGAGAGGAACTGTTTTGGAGCATCACACTTCCACCTCAGAAGAAATAAGGAAGGAAGGAGGAGGGTGTTCCCACGGCTCTTCAACCAGGCCGGCTCTTCAGCCTACATCCCCATCTCATCAAGTAAAAGGGATTTTTCAACTGGACCAACCAGATGGTTTAACAGTGCACTCCCACACCATTCAACTACGCAAGGGAGATACACTTAACATATGCAGTCGTATAACACCTACTAACATTTTCAAACATTAAACCTTTAAAAAAGAGTTCTAAAGAAATAGAAGCTTGAAGTATCATCTCTCAAGTATATAGACACTACTTCATGGTGTGGTAATATATGCATATAGAAGCTAGTAAACACCTCCAGGAGATGCAAAAGGAATTAGAACTGCCACAAGGTGCAAGCAAAACCTTGAGTTCTGTTTTTCCTCTTCTAATCCTTCACCCATCTGAGCTAAAGTCTAGACCTAAGGAGGCTACTAATTCAGGGATCGAGTAATCTGCCAAGCAAGAGTTTATTCAAGCACAGTTTGAAATAAAGGTTTCAAATGCATAGCCTGTCGATACTTTGGAAGGATTCTCATCATAACGAGTATGCAATTTGCTATAAAGAAGAATGCCCATtacggactaaatgtttatgtcctcctaaaattcatatgttgaaggcctaactctcaatgtgatgattatgtggagatggtgcctttgggaggtaactgggcttagatgtgggcgtgagggtggggcctcatggtgaaatttgtgcccttgtaagaaaaacacaccacaggttttcattcttcctctgccacatgaggccacagtaagaatgtgaccatctgctagccaggaggaaagtcctcactggaacccgcccataataacactccagtctggggcttttcagcctccagaaccatgag</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG014129]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:29, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT035050 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1086 nt |
| Genomic location |
chr13+:106359220..106414120 |
| Exon number |
3 |
| Exons |
106359220..106359266,106359449..106359978,106413612..106414120 |
| Genome context |
|
| Sequence |
000001 GCTGCAGTGA ATTCTACAAA GAGGCTATGG GAAAGAAACC TGGAAAGTAC CCTTGGCTGT GTACATTTGA GTAAAGAGAG 000080
000081 CACTATAAAA TCAAAAACCA ATGAAATGGT TTCCAGAACA CAGAACTATT AAGCTTAAGA AAAGGACAGA AGGAACTGAA 000160 000161 GAGAGAGGAA CTGTTTTGGA GCATCACACT TCCACCTCAG AAGAAATAAG GAAGGAAGGA GGAGGGTGTT CCCACGGCTC 000240 000241 TTCAACCAGG CCGGCTCTTC AGCCTACATC CCCATCTCAT CAAGTAAAAG GGATTTTTCA ACTGGACCAA CCAGATGGTT 000320 000321 TAACAGTGCA CTCCCACACC ATTCAACTAC GCAAGGGAGA TACACTTAAC ATATGCAGTC GTATAACACC TACTAACATT 000400 000401 TTCAAACATT AAACCTTTAA AAAAGAGTTC TAAAGAAATA GAAGCTTGAA GTATCATCTC TCAAGTATAT AGACACTACT 000480 000481 TCATGGTGTG GTAATATATG CATATAGAAG CTAGTAAACA CCTCCAGGAG ATGCAAAAGG AATTAGAACT GCCACAAGGT 000560 000561 GCAAGCAAAA CCTTGAGTTC TGTTTTTCCT CTTCTAATCC TTCACCCATC TGAGCTAAAG TCTAGACCTA AGGAGGCTAC 000640 000641 TAATTCAGGG ATCGAGTAAT CTGCCAAGCA AGAGTTTATT CAAGCACAGT TTGAAATAAA GGTTTCAAAT GCATAGCCTG 000720 000721 TCGATACTTT GGAAGGATTC TCATCATAAC GAGTATGCAA TTTGCTATAA AGAAGAATGC CCATtacgga ctaaatgttt 000800 000801 atgtcctcct aaaattcata tgttgaaggc ctaactctca atgtgatgat tatgtggaga tggtgccttt gggaggtaac 000880 000881 tgggcttaga tgtgggcgtg agggtggggc ctcatggtga aatttgtgcc cttgtaagaa aaacacacca caggttttca 000960 000961 ttcttcctct gccacatgag gccacagtaa gaatgtgacc atctgctagc caggaggaaa gtcctcactg gaacccgccc 001040 001041 ataataacac tccagtctgg ggcttttcag cctccagaac catgag |
Predicted Small Protein
| Name | NONHSAT035050_smProtein_497:658 |
| Length | 54 |
| Molecular weight | 5909.745 |
| Aromaticity | 0.0188679245283 |
| Instability index | 78.3735849057 |
| Isoelectric point | 6.26666259766 |
| Runs | 9 |
| Runs residual | 0.00954901058444 |
| Runs probability | 0.0426210524251 |
| Amino acid sequence | MHIEASKHLQEMQKELELPQGASKTLSSVFPLLILHPSELKSRPKEATNSGIE |
| Secondary structure | LLHHHHHHHHHHHHHHLLLLLLLLHHHHHLLLEEELLLLLLLLLLHHHLLLLL |
| PRMN | - |
| PiMo | - |
