Difference between revisions of "NONHSAT035074"
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sequence = <dnaseq>ggtgaggaaacagacgcacacagaggtgaagcagcttccccaaaggcgcatggctaagagtggTTATttgtctccttgtcacgctgttttgagggaaggattcctacactaggattatgaagatcgccaaacagatgacgctggatcccagaaaagtggggcagaatgcagtttagttgtcacatatgctcacagcctagggaagaagacagcggacagcccacagggccacgcgatggttcaagaacagagtgaacagccagggcctgtgaaagGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGTATCTCTGAAGAGTTCTAGACTGAGCTACATCAGTAGACCTCTGCATTTAAAGGGAGCAATTCTCATCCGAGGATCCTGATTCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAACTGCATGCCTGAGAGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGGCTTATTGTTGTGTGGGGTAAAGCATGAGATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCGAGTGTGCTGGGTTCTGCAGatattatctattttaaattaacgctccgtaaaaggaatttaaagttttctgaaaagaaaccaatgaatgaagctaatagtaataatgcaaacacaagcaagctgccaagtaagccatttttctattacggagcccttcatcagtcatattattaaagaaaaaacaaCAATACTAGTAATAATGATCACCTATTCAAGACCAAGAGGTTGATCCTCCAAAATTCAAACAAGGAAAAATCTCTCCCAATCTCTCCTTTCCTCCATCCCTTTTCTTTACTTCTCATCCCATATATAATATTATATAATGCATACGTAATAAAAGacattcactattatta</dnaseq>| | sequence = <dnaseq>ggtgaggaaacagacgcacacagaggtgaagcagcttccccaaaggcgcatggctaagagtggTTATttgtctccttgtcacgctgttttgagggaaggattcctacactaggattatgaagatcgccaaacagatgacgctggatcccagaaaagtggggcagaatgcagtttagttgtcacatatgctcacagcctagggaagaagacagcggacagcccacagggccacgcgatggttcaagaacagagtgaacagccagggcctgtgaaagGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGTATCTCTGAAGAGTTCTAGACTGAGCTACATCAGTAGACCTCTGCATTTAAAGGGAGCAATTCTCATCCGAGGATCCTGATTCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAACTGCATGCCTGAGAGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGGCTTATTGTTGTGTGGGGTAAAGCATGAGATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCGAGTGTGCTGGGTTCTGCAGatattatctattttaaattaacgctccgtaaaaggaatttaaagttttctgaaaagaaaccaatgaatgaagctaatagtaataatgcaaacacaagcaagctgccaagtaagccatttttctattacggagcccttcatcagtcatattattaaagaaaaaacaaCAATACTAGTAATAATGATCACCTATTCAAGACCAAGAGGTTGATCCTCCAAAATTCAAACAAGGAAAAATCTCTCCCAATCTCTCCTTTCCTCCATCCCTTTTCTTTACTTCTCATCCCATATATAATATTATATAATGCATACGTAATAAAAGacattcactattatta</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG014135]] | + | [[Category:Intergenic]][[Category:NONHSAG014135]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:29, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT035074 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1223 nt |
| Genomic location |
chr13+:107306228..107324528 |
| Exon number |
3 |
| Exons |
107306228..107306502,107320994..107321276,107323864..107324528 |
| Genome context |
|
| Sequence |
000001 ggtgaggaaa cagacgcaca cagaggtgaa gcagcttccc caaaggcgca tggctaagag tggTTATttg tctccttgtc 000080
000081 acgctgtttt gagggaagga ttcctacact aggattatga agatcgccaa acagatgacg ctggatccca gaaaagtggg 000160 000161 gcagaatgca gtttagttgt cacatatgct cacagcctag ggaagaagac agcggacagc ccacagggcc acgcgatggt 000240 000241 tcaagaacag agtgaacagc cagggcctgt gaaagGGAGG AATCTCCCAG TGTTTGTGCC ATGTTTTGAT CTGACTGAAA 000320 000321 GCCATAAACA TAGCCGAAGC CTGGGCCATC CACAGAAGAC CCAATGTTCT CTTTTTCCAA GTGGGCATTT TGTATCTCTG 000400 000401 AAGAGTTCTA GACTGAGCTA CATCAGTAGA CCTCTGCATT TAAAGGGAGC AATTCTCATC CGAGGATCCT GATTCTTCTA 000480 000481 CTGTAGTGCA ATTTCACCAC TCTCTCCAAA TGTCTCCAAG CAAATTCAAA GCAGCTGAAA ATAACTGCAT GCCTGAGAGG 000560 000561 ACCACGAAGC TTCAGGCCAG CCCTGTCCCG AAGTCTTCTG TGCTTCATGT CGAGTGGTCT GCAGTGGACT GTGTCTGCTT 000640 000641 GAAGCGATGC TCCGGAGGGC TTATTGTTGT GTGGGGTAAA GCATGAGATC ACTGAAAAAT GAGAGAAATC GAGCATACGA 000720 000721 AATGTGAAGC ATATCTGTTG ACACCATGCG CTCCCTTTGC TTGCACTGGA TGGCGCATGG TTTCCGTGCG CAGTGCCTGA 000800 000801 GGTGTGGGGC AGGCGAGGCC CATGCAGCCT GGCTCCTTTC CAGAAGGTTG CTGTTCATTA CAGCTCGAGT GTGCTGGGTT 000880 000881 CTGCAGatat tatctatttt aaattaacgc tccgtaaaag gaatttaaag ttttctgaaa agaaaccaat gaatgaagct 000960 000961 aatagtaata atgcaaacac aagcaagctg ccaagtaagc catttttcta ttacggagcc cttcatcagt catattatta 001040 001041 aagaaaaaac aaCAATACTA GTAATAATGA TCACCTATTC AAGACCAAGA GGTTGATCCT CCAAAATTCA AACAAGGAAA 001120 001121 AATCTCTCCC AATCTCTCCT TTCCTCCATC CCTTTTCTTT ACTTCTCATC CCATATATAA TATTATATAA TGCATACGTA 001200 001201 ATAAAAGaca ttcactatta tta |
Predicted Small Protein
| Name | NONHSAT035074_smProtein_509:685 |
| Length | 59 |
| Molecular weight | 6276.3389 |
| Aromaticity | 0.051724137931 |
| Instability index | 61.5068965517 |
| Isoelectric point | 9.12872314453 |
| Runs | 7 |
| Runs residual | 0.035903751421 |
| Runs probability | 0.0385974209503 |
| Amino acid sequence | MSPSKFKAAENNCMPERTTKLQASPVPKSSVLHVEWSAVDCVCLKRCSGGLIVVWGKA |
| Secondary structure | LLHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELLLLEEEEEEEL |
| PRMN | - |
| PiMo | - |
