Difference between revisions of "NONHSAT039542"
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sequence = <dnaseq>AAGAACTGTCCTTGGGTTTATGCTCTGTTATTGTCTGGGCAACATTTCATGATGTGCCTATGTGTGTTTTTAATTATTGTTTGCTTAAAATGTCCCAAGTTGGAGCTGGTTGGAAAGTCATGAGCTAGTTTGACCCATGCCTTATAAGATTTAAGTAGGCAAATAGAAATTTATTAATATCTGAAATGGTGAAATAACCTACAACATCTACTGACTAGATGTTTTTGTAATGTAGTCACATCTTTCTCTTGATCCCTCCTGTCTTCCAGTTTGTCTTCTTTATTAGCCACCAAACCCAGTTATGTTCTTTTATTCTTTTTTAAGTCTCTTTTCCCCCTTCCCCATCCTCTTTGTCTCACAGGAACAACTTGATACAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAA</dnaseq>| | sequence = <dnaseq>AAGAACTGTCCTTGGGTTTATGCTCTGTTATTGTCTGGGCAACATTTCATGATGTGCCTATGTGTGTTTTTAATTATTGTTTGCTTAAAATGTCCCAAGTTGGAGCTGGTTGGAAAGTCATGAGCTAGTTTGACCCATGCCTTATAAGATTTAAGTAGGCAAATAGAAATTTATTAATATCTGAAATGGTGAAATAACCTACAACATCTACTGACTAGATGTTTTTGTAATGTAGTCACATCTTTCTCTTGATCCCTCCTGTCTTCCAGTTTGTCTTCTTTATTAGCCACCAAACCCAGTTATGTTCTTTTATTCTTTTTTAAGTCTCTTTTCCCCCTTCCCCATCCTCTTTGTCTCACAGGAACAACTTGATACAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG015832]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG015832]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:45, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT039542 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
588 nt |
| Genomic location |
chr14+:97028795..97031443 |
| Exon number |
2 |
| Exons |
97028795..97029230,97031292..97031443 |
| Genome context |
|
| Sequence |
000001 AAGAACTGTC CTTGGGTTTA TGCTCTGTTA TTGTCTGGGC AACATTTCAT GATGTGCCTA TGTGTGTTTT TAATTATTGT 000080
000081 TTGCTTAAAA TGTCCCAAGT TGGAGCTGGT TGGAAAGTCA TGAGCTAGTT TGACCCATGC CTTATAAGAT TTAAGTAGGC 000160 000161 AAATAGAAAT TTATTAATAT CTGAAATGGT GAAATAACCT ACAACATCTA CTGACTAGAT GTTTTTGTAA TGTAGTCACA 000240 000241 TCTTTCTCTT GATCCCTCCT GTCTTCCAGT TTGTCTTCTT TATTAGCCAC CAAACCCAGT TATGTTCTTT TATTCTTTTT 000320 000321 TAAGTCTCTT TTCCCCCTTC CCCATCCTCT TTGTCTCACA GGAACAACTT GATACAGAGA CAAGTACAAC TCAATCAGAA 000400 000401 ACTATTCAGA CAGCGGCTTC TCTGTTGGCC TCTCAGAAAA CATCCAGTAC AGACCTTTCT GATATCCCTG CTCTCCCTGC 000480 000481 AAATCCTATT CCTGTTATCA AGAATTCAAT AAAACTGAGA TTGAATCGGT AAAAACAACC TCAGGGGTCC ATAAACAATA 000560 000561 TCTGCCAACT CAACCTGTTG TCTTCAAA |
Predicted Small Protein
| Name | NONHSAT039542_smProtein_59:127 |
| Length | 23 |
| Molecular weight | 2496.0657 |
| Aromaticity | 0.136363636364 |
| Instability index | 65.1363636364 |
| Isoelectric point | 8.84149169922 |
| Runs | 6 |
| Runs residual | 0.0363636363636 |
| Runs probability | 0.0330035918272 |
| Amino acid sequence | MCVFNYCLLKMSQVGAGWKVMS |
| Secondary structure | LEEEEHHHHHHHHLLLLLEELL |
| PRMN | - |
| PiMo | - |
