Difference between revisions of "NONHSAT040745"

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sequence = <dnaseq>GCGGAGAGCAGAGAGGCGGAAAACCCGGGCTGGATTTCTGGTGGCTTTTGTTCCCGCAAATTTACGTGGAGCATTGTTTTTGGGCGAAAACGGGGCCTTCGGCCTTCCTGCTTTATTCCTGAGCGGTGTAAGAGGGAGGTAGTGGGTATCTTCGAGAAACGGCCGCCGCggggtccggagccccgggttccaatcccgggtcggccactgctaagctgtgtgaccttggGATATGATCCAAGGTGCTGAAAACTTCCTAACAAAACTCTTCAGCCGAATCTGGcacgcctatggttccagctactgggtagactgaggcaggaggatcgcttgaggccaagagttcaaggccaacctgggcaacatggtgagacccccccctcccccccagtctctccaaaacaaacaaaCCCCACATTCTCCAGTCTTAGGTCTTCAAGGATGAACAGACATTGCAGAAAGGCACGGTTGGGAACAGAAAAAAATGATCTCCACTCCCCCAGCCCCCTCCACACCTTGGGCACATTTCCCTGGAGCCGCCCGAGTGTTCTTTGTCAGTGTAGGAAGAAGCAAAAATCTAAATGGAGTCAGGATGGCCTCCCACATGGGCACAAGGACAAGGCTGGGGACAGTTGGGTCTCCTCATCTTATTTCCCAGGTCTAGGCTGATTTCTATTAATAATTAAATTAATCGTTGTTCTCCTGGACCTCACTTCTTAATGTGATTCCAGGAAACTGGCCACATTCCAAAATTCATAATCTAAGGTAGTGAAATAACGTGAGCATCAAGACAGTTTggctgggctcagaggctcacatctgtaatcccagtactttgggaggccgagggtagatcccttgagcccaggagttcgagaccagcctgggcaacatggcgaaatcccatctctacaaaaaatacaaaaattagccagatgtggtggcatgtgcctgtagtcccagttacttgggagactgcggtggaaggattgcctgagcccaggaaagggaggttgcggtgaatggggatcccaccactgcactccagcctgggtgacagcgtaagactctgtctcaaaaacaaaagaTTCATTTCTTATTGATAAAGCAAGCTCCTTGGAGAAAGATCTTGGAACCTCATTGGGAGTGGAGGTGGGGCTTCTTCAATCCAGCCGAGCTGGCTGTGAAACCCCcagggtttggtaccaagtgagctccagtcccagctgtggctgactgtgtgaacttggctatgcattcaagggcctctgagcctcagtttcctcatctgtagaagagagCCAGGAACCCGTCATCCTGGCTAGCAGTGGAAGTCAAAGGTGCTCATGGAAAGAATGTCCTTGCTGGCTGGAACAAGGGAGGCCTGAGCTGTGGAAGTCCTTGGATCAAGGTCCTCCCCACTTCCCGCTGCCTTTTTGGTCCTTCTTGCGTGCTCTTTGTGATTTAATGGCTTAGtaggttgaatcatgtccccccaaagtttatctctaccccaaatctcagaatgtgaccttatttggaaaaagagtctttgcagataattaaggtaagagtcaagataaaatcacactgaattatggtgagccctacatgcaatgagacagtccttacaagatacagaaaagaacacatagagacttcgggggaaaggagactatgtgcaaggatggcagagattggagccgaggggtgcctgggcctaccagaggctgcaagagacagggaggaccctcccctagagcctccagggggaacagccctgcccacaccttgactttggactcctggcctccagaactgtgagaggACCTAGGACCCTACGAGAGGAGGGATCTGGAGGCCAGGACAGGAGCAGGACAACACAAACAGAGGCCTCAGAAGAAGACTCAGAGTGGGACAGGGGTTCCTTAAGTGACGGGGGCTGGAAGTGCACAGAGAAGCCTGGTGCAGCAGGGAATTTTCTCTCCCTGGGGTGCTGCCAAGGTGTCTGTTGCTTGCCAGCTTTTCCAGCCATGACTGCAGACAAAGTCCACCTAGAGTCATA</dnaseq>|
 
sequence = <dnaseq>GCGGAGAGCAGAGAGGCGGAAAACCCGGGCTGGATTTCTGGTGGCTTTTGTTCCCGCAAATTTACGTGGAGCATTGTTTTTGGGCGAAAACGGGGCCTTCGGCCTTCCTGCTTTATTCCTGAGCGGTGTAAGAGGGAGGTAGTGGGTATCTTCGAGAAACGGCCGCCGCggggtccggagccccgggttccaatcccgggtcggccactgctaagctgtgtgaccttggGATATGATCCAAGGTGCTGAAAACTTCCTAACAAAACTCTTCAGCCGAATCTGGcacgcctatggttccagctactgggtagactgaggcaggaggatcgcttgaggccaagagttcaaggccaacctgggcaacatggtgagacccccccctcccccccagtctctccaaaacaaacaaaCCCCACATTCTCCAGTCTTAGGTCTTCAAGGATGAACAGACATTGCAGAAAGGCACGGTTGGGAACAGAAAAAAATGATCTCCACTCCCCCAGCCCCCTCCACACCTTGGGCACATTTCCCTGGAGCCGCCCGAGTGTTCTTTGTCAGTGTAGGAAGAAGCAAAAATCTAAATGGAGTCAGGATGGCCTCCCACATGGGCACAAGGACAAGGCTGGGGACAGTTGGGTCTCCTCATCTTATTTCCCAGGTCTAGGCTGATTTCTATTAATAATTAAATTAATCGTTGTTCTCCTGGACCTCACTTCTTAATGTGATTCCAGGAAACTGGCCACATTCCAAAATTCATAATCTAAGGTAGTGAAATAACGTGAGCATCAAGACAGTTTggctgggctcagaggctcacatctgtaatcccagtactttgggaggccgagggtagatcccttgagcccaggagttcgagaccagcctgggcaacatggcgaaatcccatctctacaaaaaatacaaaaattagccagatgtggtggcatgtgcctgtagtcccagttacttgggagactgcggtggaaggattgcctgagcccaggaaagggaggttgcggtgaatggggatcccaccactgcactccagcctgggtgacagcgtaagactctgtctcaaaaacaaaagaTTCATTTCTTATTGATAAAGCAAGCTCCTTGGAGAAAGATCTTGGAACCTCATTGGGAGTGGAGGTGGGGCTTCTTCAATCCAGCCGAGCTGGCTGTGAAACCCCcagggtttggtaccaagtgagctccagtcccagctgtggctgactgtgtgaacttggctatgcattcaagggcctctgagcctcagtttcctcatctgtagaagagagCCAGGAACCCGTCATCCTGGCTAGCAGTGGAAGTCAAAGGTGCTCATGGAAAGAATGTCCTTGCTGGCTGGAACAAGGGAGGCCTGAGCTGTGGAAGTCCTTGGATCAAGGTCCTCCCCACTTCCCGCTGCCTTTTTGGTCCTTCTTGCGTGCTCTTTGTGATTTAATGGCTTAGtaggttgaatcatgtccccccaaagtttatctctaccccaaatctcagaatgtgaccttatttggaaaaagagtctttgcagataattaaggtaagagtcaagataaaatcacactgaattatggtgagccctacatgcaatgagacagtccttacaagatacagaaaagaacacatagagacttcgggggaaaggagactatgtgcaaggatggcagagattggagccgaggggtgcctgggcctaccagaggctgcaagagacagggaggaccctcccctagagcctccagggggaacagccctgcccacaccttgactttggactcctggcctccagaactgtgagaggACCTAGGACCCTACGAGAGGAGGGATCTGGAGGCCAGGACAGGAGCAGGACAACACAAACAGAGGCCTCAGAAGAAGACTCAGAGTGGGACAGGGGTTCCTTAAGTGACGGGGGCTGGAAGTGCACAGAGAAGCCTGGTGCAGCAGGGAATTTTCTCTCCCTGGGGTGCTGCCAAGGTGTCTGTTGCTTGCCAGCTTTTCCAGCCATGACTGCAGACAAAGTCCACCTAGAGTCATA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG016247]]
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[[Category:Intergenic]][[Category:NONHSAG016247]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 21:50, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT040745

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2065 nt

Genomic location

chr15-:22541116..22545386

Exon number

4

Exons

22541116..22541176,22541564..22541739,22542919..22544517,22545158..22545386

Genome context

Sequence
000001 GCGGAGAGCA GAGAGGCGGA AAACCCGGGC TGGATTTCTG GTGGCTTTTG TTCCCGCAAA TTTACGTGGA GCATTGTTTT 000080
000081 TGGGCGAAAA CGGGGCCTTC GGCCTTCCTG CTTTATTCCT GAGCGGTGTA AGAGGGAGGT AGTGGGTATC TTCGAGAAAC 000160
000161 GGCCGCCGCg gggtccggag ccccgggttc caatcccggg tcggccactg ctaagctgtg tgaccttggG ATATGATCCA 000240
000241 AGGTGCTGAA AACTTCCTAA CAAAACTCTT CAGCCGAATC TGGcacgcct atggttccag ctactgggta gactgaggca 000320
000321 ggaggatcgc ttgaggccaa gagttcaagg ccaacctggg caacatggtg agaccccccc ctccccccca gtctctccaa 000400
000401 aacaaacaaa CCCCACATTC TCCAGTCTTA GGTCTTCAAG GATGAACAGA CATTGCAGAA AGGCACGGTT GGGAACAGAA 000480
000481 AAAAATGATC TCCACTCCCC CAGCCCCCTC CACACCTTGG GCACATTTCC CTGGAGCCGC CCGAGTGTTC TTTGTCAGTG 000560
000561 TAGGAAGAAG CAAAAATCTA AATGGAGTCA GGATGGCCTC CCACATGGGC ACAAGGACAA GGCTGGGGAC AGTTGGGTCT 000640
000641 CCTCATCTTA TTTCCCAGGT CTAGGCTGAT TTCTATTAAT AATTAAATTA ATCGTTGTTC TCCTGGACCT CACTTCTTAA 000720
000721 TGTGATTCCA GGAAACTGGC CACATTCCAA AATTCATAAT CTAAGGTAGT GAAATAACGT GAGCATCAAG ACAGTTTggc 000800
000801 tgggctcaga ggctcacatc tgtaatccca gtactttggg aggccgaggg tagatccctt gagcccagga gttcgagacc 000880
000881 agcctgggca acatggcgaa atcccatctc tacaaaaaat acaaaaatta gccagatgtg gtggcatgtg cctgtagtcc 000960
000961 cagttacttg ggagactgcg gtggaaggat tgcctgagcc caggaaaggg aggttgcggt gaatggggat cccaccactg 001040
001041 cactccagcc tgggtgacag cgtaagactc tgtctcaaaa acaaaagaTT CATTTCTTAT TGATAAAGCA AGCTCCTTGG 001120
001121 AGAAAGATCT TGGAACCTCA TTGGGAGTGG AGGTGGGGCT TCTTCAATCC AGCCGAGCTG GCTGTGAAAC CCCcagggtt 001200
001201 tggtaccaag tgagctccag tcccagctgt ggctgactgt gtgaacttgg ctatgcattc aagggcctct gagcctcagt 001280
001281 ttcctcatct gtagaagaga gCCAGGAACC CGTCATCCTG GCTAGCAGTG GAAGTCAAAG GTGCTCATGG AAAGAATGTC 001360
001361 CTTGCTGGCT GGAACAAGGG AGGCCTGAGC TGTGGAAGTC CTTGGATCAA GGTCCTCCCC ACTTCCCGCT GCCTTTTTGG 001440
001441 TCCTTCTTGC GTGCTCTTTG TGATTTAATG GCTTAGtagg ttgaatcatg tccccccaaa gtttatctct accccaaatc 001520
001521 tcagaatgtg accttatttg gaaaaagagt ctttgcagat aattaaggta agagtcaaga taaaatcaca ctgaattatg 001600
001601 gtgagcccta catgcaatga gacagtcctt acaagataca gaaaagaaca catagagact tcgggggaaa ggagactatg 001680
001681 tgcaaggatg gcagagattg gagccgaggg gtgcctgggc ctaccagagg ctgcaagaga cagggaggac cctcccctag 001760
001761 agcctccagg gggaacagcc ctgcccacac cttgactttg gactcctggc ctccagaact gtgagaggAC CTAGGACCCT 001840
001841 ACGAGAGGAG GGATCTGGAG GCCAGGACAG GAGCAGGACA ACACAAACAG AGGCCTCAGA AGAAGACTCA GAGTGGGACA 001920
001921 GGGGTTCCTT AAGTGACGGG GGCTGGAAGT GCACAGAGAA GCCTGGTGCA GCAGGGAATT TTCTCTCCCT GGGGTGCTGC 002000
002001 CAAGGTGTCT GTTGCTTGCC AGCTTTTCCA GCCATGACTG CAGACAAAGT CCACCTAGAG TCATA
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Predicted Small Protein

Name NONHSAT040745_smProtein_581:685
Length 35
Molecular weight 3824.3696
Aromaticity 0.117647058824
Instability index 44.1029411765
Isoelectric point 9.34967041016
Runs 6
Runs residual 0.00967982129561
Runs probability 0.0488576812108
Amino acid sequence MESGWPPTWAQGQGWGQLGLLILFPRSRLISINN
Secondary structure LLLLLLLLLLLLLLHHHHHEEEELLLLLEEEELL
PRMN -
PiMo -