Difference between revisions of "NONHSAT040745"
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sequence = <dnaseq>GCGGAGAGCAGAGAGGCGGAAAACCCGGGCTGGATTTCTGGTGGCTTTTGTTCCCGCAAATTTACGTGGAGCATTGTTTTTGGGCGAAAACGGGGCCTTCGGCCTTCCTGCTTTATTCCTGAGCGGTGTAAGAGGGAGGTAGTGGGTATCTTCGAGAAACGGCCGCCGCggggtccggagccccgggttccaatcccgggtcggccactgctaagctgtgtgaccttggGATATGATCCAAGGTGCTGAAAACTTCCTAACAAAACTCTTCAGCCGAATCTGGcacgcctatggttccagctactgggtagactgaggcaggaggatcgcttgaggccaagagttcaaggccaacctgggcaacatggtgagacccccccctcccccccagtctctccaaaacaaacaaaCCCCACATTCTCCAGTCTTAGGTCTTCAAGGATGAACAGACATTGCAGAAAGGCACGGTTGGGAACAGAAAAAAATGATCTCCACTCCCCCAGCCCCCTCCACACCTTGGGCACATTTCCCTGGAGCCGCCCGAGTGTTCTTTGTCAGTGTAGGAAGAAGCAAAAATCTAAATGGAGTCAGGATGGCCTCCCACATGGGCACAAGGACAAGGCTGGGGACAGTTGGGTCTCCTCATCTTATTTCCCAGGTCTAGGCTGATTTCTATTAATAATTAAATTAATCGTTGTTCTCCTGGACCTCACTTCTTAATGTGATTCCAGGAAACTGGCCACATTCCAAAATTCATAATCTAAGGTAGTGAAATAACGTGAGCATCAAGACAGTTTggctgggctcagaggctcacatctgtaatcccagtactttgggaggccgagggtagatcccttgagcccaggagttcgagaccagcctgggcaacatggcgaaatcccatctctacaaaaaatacaaaaattagccagatgtggtggcatgtgcctgtagtcccagttacttgggagactgcggtggaaggattgcctgagcccaggaaagggaggttgcggtgaatggggatcccaccactgcactccagcctgggtgacagcgtaagactctgtctcaaaaacaaaagaTTCATTTCTTATTGATAAAGCAAGCTCCTTGGAGAAAGATCTTGGAACCTCATTGGGAGTGGAGGTGGGGCTTCTTCAATCCAGCCGAGCTGGCTGTGAAACCCCcagggtttggtaccaagtgagctccagtcccagctgtggctgactgtgtgaacttggctatgcattcaagggcctctgagcctcagtttcctcatctgtagaagagagCCAGGAACCCGTCATCCTGGCTAGCAGTGGAAGTCAAAGGTGCTCATGGAAAGAATGTCCTTGCTGGCTGGAACAAGGGAGGCCTGAGCTGTGGAAGTCCTTGGATCAAGGTCCTCCCCACTTCCCGCTGCCTTTTTGGTCCTTCTTGCGTGCTCTTTGTGATTTAATGGCTTAGtaggttgaatcatgtccccccaaagtttatctctaccccaaatctcagaatgtgaccttatttggaaaaagagtctttgcagataattaaggtaagagtcaagataaaatcacactgaattatggtgagccctacatgcaatgagacagtccttacaagatacagaaaagaacacatagagacttcgggggaaaggagactatgtgcaaggatggcagagattggagccgaggggtgcctgggcctaccagaggctgcaagagacagggaggaccctcccctagagcctccagggggaacagccctgcccacaccttgactttggactcctggcctccagaactgtgagaggACCTAGGACCCTACGAGAGGAGGGATCTGGAGGCCAGGACAGGAGCAGGACAACACAAACAGAGGCCTCAGAAGAAGACTCAGAGTGGGACAGGGGTTCCTTAAGTGACGGGGGCTGGAAGTGCACAGAGAAGCCTGGTGCAGCAGGGAATTTTCTCTCCCTGGGGTGCTGCCAAGGTGTCTGTTGCTTGCCAGCTTTTCCAGCCATGACTGCAGACAAAGTCCACCTAGAGTCATA</dnaseq>| | sequence = <dnaseq>GCGGAGAGCAGAGAGGCGGAAAACCCGGGCTGGATTTCTGGTGGCTTTTGTTCCCGCAAATTTACGTGGAGCATTGTTTTTGGGCGAAAACGGGGCCTTCGGCCTTCCTGCTTTATTCCTGAGCGGTGTAAGAGGGAGGTAGTGGGTATCTTCGAGAAACGGCCGCCGCggggtccggagccccgggttccaatcccgggtcggccactgctaagctgtgtgaccttggGATATGATCCAAGGTGCTGAAAACTTCCTAACAAAACTCTTCAGCCGAATCTGGcacgcctatggttccagctactgggtagactgaggcaggaggatcgcttgaggccaagagttcaaggccaacctgggcaacatggtgagacccccccctcccccccagtctctccaaaacaaacaaaCCCCACATTCTCCAGTCTTAGGTCTTCAAGGATGAACAGACATTGCAGAAAGGCACGGTTGGGAACAGAAAAAAATGATCTCCACTCCCCCAGCCCCCTCCACACCTTGGGCACATTTCCCTGGAGCCGCCCGAGTGTTCTTTGTCAGTGTAGGAAGAAGCAAAAATCTAAATGGAGTCAGGATGGCCTCCCACATGGGCACAAGGACAAGGCTGGGGACAGTTGGGTCTCCTCATCTTATTTCCCAGGTCTAGGCTGATTTCTATTAATAATTAAATTAATCGTTGTTCTCCTGGACCTCACTTCTTAATGTGATTCCAGGAAACTGGCCACATTCCAAAATTCATAATCTAAGGTAGTGAAATAACGTGAGCATCAAGACAGTTTggctgggctcagaggctcacatctgtaatcccagtactttgggaggccgagggtagatcccttgagcccaggagttcgagaccagcctgggcaacatggcgaaatcccatctctacaaaaaatacaaaaattagccagatgtggtggcatgtgcctgtagtcccagttacttgggagactgcggtggaaggattgcctgagcccaggaaagggaggttgcggtgaatggggatcccaccactgcactccagcctgggtgacagcgtaagactctgtctcaaaaacaaaagaTTCATTTCTTATTGATAAAGCAAGCTCCTTGGAGAAAGATCTTGGAACCTCATTGGGAGTGGAGGTGGGGCTTCTTCAATCCAGCCGAGCTGGCTGTGAAACCCCcagggtttggtaccaagtgagctccagtcccagctgtggctgactgtgtgaacttggctatgcattcaagggcctctgagcctcagtttcctcatctgtagaagagagCCAGGAACCCGTCATCCTGGCTAGCAGTGGAAGTCAAAGGTGCTCATGGAAAGAATGTCCTTGCTGGCTGGAACAAGGGAGGCCTGAGCTGTGGAAGTCCTTGGATCAAGGTCCTCCCCACTTCCCGCTGCCTTTTTGGTCCTTCTTGCGTGCTCTTTGTGATTTAATGGCTTAGtaggttgaatcatgtccccccaaagtttatctctaccccaaatctcagaatgtgaccttatttggaaaaagagtctttgcagataattaaggtaagagtcaagataaaatcacactgaattatggtgagccctacatgcaatgagacagtccttacaagatacagaaaagaacacatagagacttcgggggaaaggagactatgtgcaaggatggcagagattggagccgaggggtgcctgggcctaccagaggctgcaagagacagggaggaccctcccctagagcctccagggggaacagccctgcccacaccttgactttggactcctggcctccagaactgtgagaggACCTAGGACCCTACGAGAGGAGGGATCTGGAGGCCAGGACAGGAGCAGGACAACACAAACAGAGGCCTCAGAAGAAGACTCAGAGTGGGACAGGGGTTCCTTAAGTGACGGGGGCTGGAAGTGCACAGAGAAGCCTGGTGCAGCAGGGAATTTTCTCTCCCTGGGGTGCTGCCAAGGTGTCTGTTGCTTGCCAGCTTTTCCAGCCATGACTGCAGACAAAGTCCACCTAGAGTCATA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG016247]] | + | [[Category:Intergenic]][[Category:NONHSAG016247]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:50, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040745 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2065 nt |
Genomic location |
chr15-:22541116..22545386 |
Exon number |
4 |
Exons |
22541116..22541176,22541564..22541739,22542919..22544517,22545158..22545386 |
Genome context |
|
Sequence |
000001 GCGGAGAGCA GAGAGGCGGA AAACCCGGGC TGGATTTCTG GTGGCTTTTG TTCCCGCAAA TTTACGTGGA GCATTGTTTT 000080
000081 TGGGCGAAAA CGGGGCCTTC GGCCTTCCTG CTTTATTCCT GAGCGGTGTA AGAGGGAGGT AGTGGGTATC TTCGAGAAAC 000160 000161 GGCCGCCGCg gggtccggag ccccgggttc caatcccggg tcggccactg ctaagctgtg tgaccttggG ATATGATCCA 000240 000241 AGGTGCTGAA AACTTCCTAA CAAAACTCTT CAGCCGAATC TGGcacgcct atggttccag ctactgggta gactgaggca 000320 000321 ggaggatcgc ttgaggccaa gagttcaagg ccaacctggg caacatggtg agaccccccc ctccccccca gtctctccaa 000400 000401 aacaaacaaa CCCCACATTC TCCAGTCTTA GGTCTTCAAG GATGAACAGA CATTGCAGAA AGGCACGGTT GGGAACAGAA 000480 000481 AAAAATGATC TCCACTCCCC CAGCCCCCTC CACACCTTGG GCACATTTCC CTGGAGCCGC CCGAGTGTTC TTTGTCAGTG 000560 000561 TAGGAAGAAG CAAAAATCTA AATGGAGTCA GGATGGCCTC CCACATGGGC ACAAGGACAA GGCTGGGGAC AGTTGGGTCT 000640 000641 CCTCATCTTA TTTCCCAGGT CTAGGCTGAT TTCTATTAAT AATTAAATTA ATCGTTGTTC TCCTGGACCT CACTTCTTAA 000720 000721 TGTGATTCCA GGAAACTGGC CACATTCCAA AATTCATAAT CTAAGGTAGT GAAATAACGT GAGCATCAAG ACAGTTTggc 000800 000801 tgggctcaga ggctcacatc tgtaatccca gtactttggg aggccgaggg tagatccctt gagcccagga gttcgagacc 000880 000881 agcctgggca acatggcgaa atcccatctc tacaaaaaat acaaaaatta gccagatgtg gtggcatgtg cctgtagtcc 000960 000961 cagttacttg ggagactgcg gtggaaggat tgcctgagcc caggaaaggg aggttgcggt gaatggggat cccaccactg 001040 001041 cactccagcc tgggtgacag cgtaagactc tgtctcaaaa acaaaagaTT CATTTCTTAT TGATAAAGCA AGCTCCTTGG 001120 001121 AGAAAGATCT TGGAACCTCA TTGGGAGTGG AGGTGGGGCT TCTTCAATCC AGCCGAGCTG GCTGTGAAAC CCCcagggtt 001200 001201 tggtaccaag tgagctccag tcccagctgt ggctgactgt gtgaacttgg ctatgcattc aagggcctct gagcctcagt 001280 001281 ttcctcatct gtagaagaga gCCAGGAACC CGTCATCCTG GCTAGCAGTG GAAGTCAAAG GTGCTCATGG AAAGAATGTC 001360 001361 CTTGCTGGCT GGAACAAGGG AGGCCTGAGC TGTGGAAGTC CTTGGATCAA GGTCCTCCCC ACTTCCCGCT GCCTTTTTGG 001440 001441 TCCTTCTTGC GTGCTCTTTG TGATTTAATG GCTTAGtagg ttgaatcatg tccccccaaa gtttatctct accccaaatc 001520 001521 tcagaatgtg accttatttg gaaaaagagt ctttgcagat aattaaggta agagtcaaga taaaatcaca ctgaattatg 001600 001601 gtgagcccta catgcaatga gacagtcctt acaagataca gaaaagaaca catagagact tcgggggaaa ggagactatg 001680 001681 tgcaaggatg gcagagattg gagccgaggg gtgcctgggc ctaccagagg ctgcaagaga cagggaggac cctcccctag 001760 001761 agcctccagg gggaacagcc ctgcccacac cttgactttg gactcctggc ctccagaact gtgagaggAC CTAGGACCCT 001840 001841 ACGAGAGGAG GGATCTGGAG GCCAGGACAG GAGCAGGACA ACACAAACAG AGGCCTCAGA AGAAGACTCA GAGTGGGACA 001920 001921 GGGGTTCCTT AAGTGACGGG GGCTGGAAGT GCACAGAGAA GCCTGGTGCA GCAGGGAATT TTCTCTCCCT GGGGTGCTGC 002000 002001 CAAGGTGTCT GTTGCTTGCC AGCTTTTCCA GCCATGACTG CAGACAAAGT CCACCTAGAG TCATA |
Predicted Small Protein
Name | NONHSAT040745_smProtein_581:685 |
Length | 35 |
Molecular weight | 3824.3696 |
Aromaticity | 0.117647058824 |
Instability index | 44.1029411765 |
Isoelectric point | 9.34967041016 |
Runs | 6 |
Runs residual | 0.00967982129561 |
Runs probability | 0.0488576812108 |
Amino acid sequence | MESGWPPTWAQGQGWGQLGLLILFPRSRLISINN |
Secondary structure | LLLLLLLLLLLLLLHHHHHEEEELLLLLEEEELL |
PRMN | - |
PiMo | - |