Difference between revisions of "NONHSAT043955"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGGCACAATATTCTGCATTTAACATTTGAACTTCTCCTATCCGAGGCAGCAGGCCGTTTTGTCCTGGGGTCGCTGACCCTGGCTCCCCCATCAGCTGCCCTGAAACCTTAATTGAATGACAGATGGTCATTTTCGGGGGCGCCAGAAGCTGCGGGCGGCCAGCGGCGCGGGGACTGCGGCCCCAGGCCCCGGCAGTCCTGCCCGGACTCTGCCAGCAAGGGGCGGGCGGCAGAGGTAGCAGGCGGCTTGCGGAGCTGGCCTAGCCTGCGGGCGCGACGGGATCTGCGGGCGTCGGGCGAACGCGTGGCAACGAGCACCTGGAGGAAACCCCGGCGTAAGAGGCCGCGCGGGCGTTAGATCACCAGCTGGGAGCTGTTTATTTATGGCTGCAAATGTGTGTGTTCAAGAGAGAGAGGGAATTGATCTTTGCCTGGACTTAAAGATGGAGCCGAAGAAGCTGGAGGGAATTTGGGCTTGTGCGTCTGGCCCAGACCCTGTGCGCCGAGCCCGAGGTCTATCCTCCCCGCACCTCTCACCTCGCGACCTTGCAGGAATCCGCGGGCCCGGATGCTGCCCAGCTGACCCTCCTGCCCCGGGCCTGGCTGCAGAGAAAGTCTTCGGGCAGGAGGCCATCCTGTTCCTGTCTTTAAAATGAGCACAATAAAAGGGGGCAAATCCTCGAACGCGAACCTGATCTCATGTCACAGAAGCAACTTGCCATGAAATCCGCTAATGCGCTGCGACTCGCCCACCAGGGCAGCGTGCGGCGGCCGAACTGCACCTGCGTTTGTGAGCCTTGTAGAAATGGAGCCCACCGGATTCCCTCACCCGGAGAAATGCCCAAACTGAAACTTGACTACACTTCCCTGGGCTGGTTCACGGTTTCATAATCTCCCAGGTTTGCTGGCTGTGTCACCAAATCCAAGCCAAACCTGCTATAAACATGATCACAGGCCACTGACCTCGCAGCACTGACCGATAACTCGGTGGCAAAATCAGCTCCTCTGGTCAGAGGTTATTAAAGCAGCGGCTGAATTCGTGTTTGTTTTTTTGAAGTGGTCAGAAAAACGTAGTCTTCTTAAACCTACAAAAACAGTCAAACACATTTGCAAATGTGCTTTACTTGTATTGGTTCGAGTGCTGGAAGCTGTCTGGCGGTGAGCTTTTTCGTTGCGTGTGGTTTATGCAGAGCACCCGGGATGTTTTTCTCGTCTTTTACGTCTTGGTATCTTTTAAAAATGTAGAATGTGTCTCTGATTGTTTCACAGTATGTTCCTTAACAACCAGATATGTAAGAAAACGTTTGGGATTGAGTGGTGAGAAAAGCAGACTGGAAAGTACAAATAAACCCAA</dnaseq>| | sequence = <dnaseq>GGGCACAATATTCTGCATTTAACATTTGAACTTCTCCTATCCGAGGCAGCAGGCCGTTTTGTCCTGGGGTCGCTGACCCTGGCTCCCCCATCAGCTGCCCTGAAACCTTAATTGAATGACAGATGGTCATTTTCGGGGGCGCCAGAAGCTGCGGGCGGCCAGCGGCGCGGGGACTGCGGCCCCAGGCCCCGGCAGTCCTGCCCGGACTCTGCCAGCAAGGGGCGGGCGGCAGAGGTAGCAGGCGGCTTGCGGAGCTGGCCTAGCCTGCGGGCGCGACGGGATCTGCGGGCGTCGGGCGAACGCGTGGCAACGAGCACCTGGAGGAAACCCCGGCGTAAGAGGCCGCGCGGGCGTTAGATCACCAGCTGGGAGCTGTTTATTTATGGCTGCAAATGTGTGTGTTCAAGAGAGAGAGGGAATTGATCTTTGCCTGGACTTAAAGATGGAGCCGAAGAAGCTGGAGGGAATTTGGGCTTGTGCGTCTGGCCCAGACCCTGTGCGCCGAGCCCGAGGTCTATCCTCCCCGCACCTCTCACCTCGCGACCTTGCAGGAATCCGCGGGCCCGGATGCTGCCCAGCTGACCCTCCTGCCCCGGGCCTGGCTGCAGAGAAAGTCTTCGGGCAGGAGGCCATCCTGTTCCTGTCTTTAAAATGAGCACAATAAAAGGGGGCAAATCCTCGAACGCGAACCTGATCTCATGTCACAGAAGCAACTTGCCATGAAATCCGCTAATGCGCTGCGACTCGCCCACCAGGGCAGCGTGCGGCGGCCGAACTGCACCTGCGTTTGTGAGCCTTGTAGAAATGGAGCCCACCGGATTCCCTCACCCGGAGAAATGCCCAAACTGAAACTTGACTACACTTCCCTGGGCTGGTTCACGGTTTCATAATCTCCCAGGTTTGCTGGCTGTGTCACCAAATCCAAGCCAAACCTGCTATAAACATGATCACAGGCCACTGACCTCGCAGCACTGACCGATAACTCGGTGGCAAAATCAGCTCCTCTGGTCAGAGGTTATTAAAGCAGCGGCTGAATTCGTGTTTGTTTTTTTGAAGTGGTCAGAAAAACGTAGTCTTCTTAAACCTACAAAAACAGTCAAACACATTTGCAAATGTGCTTTACTTGTATTGGTTCGAGTGCTGGAAGCTGTCTGGCGGTGAGCTTTTTCGTTGCGTGTGGTTTATGCAGAGCACCCGGGATGTTTTTCTCGTCTTTTACGTCTTGGTATCTTTTAAAAATGTAGAATGTGTCTCTGATTGTTTCACAGTATGTTCCTTAACAACCAGATATGTAAGAAAACGTTTGGGATTGAGTGGTGAGAAAAGCAGACTGGAAAGTACAAATAAACCCAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG016941]][[Category:Transcripts]] |
Latest revision as of 21:57, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT043955 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1353 nt |
Genomic location |
chr15-:53095448..53098609 |
Exon number |
4 |
Exons |
53095448..53096044,53096406..53096494,53096691..53096992,53098245..53098609 |
Genome context |
|
Sequence |
000001 GGGCACAATA TTCTGCATTT AACATTTGAA CTTCTCCTAT CCGAGGCAGC AGGCCGTTTT GTCCTGGGGT CGCTGACCCT 000080
000081 GGCTCCCCCA TCAGCTGCCC TGAAACCTTA ATTGAATGAC AGATGGTCAT TTTCGGGGGC GCCAGAAGCT GCGGGCGGCC 000160 000161 AGCGGCGCGG GGACTGCGGC CCCAGGCCCC GGCAGTCCTG CCCGGACTCT GCCAGCAAGG GGCGGGCGGC AGAGGTAGCA 000240 000241 GGCGGCTTGC GGAGCTGGCC TAGCCTGCGG GCGCGACGGG ATCTGCGGGC GTCGGGCGAA CGCGTGGCAA CGAGCACCTG 000320 000321 GAGGAAACCC CGGCGTAAGA GGCCGCGCGG GCGTTAGATC ACCAGCTGGG AGCTGTTTAT TTATGGCTGC AAATGTGTGT 000400 000401 GTTCAAGAGA GAGAGGGAAT TGATCTTTGC CTGGACTTAA AGATGGAGCC GAAGAAGCTG GAGGGAATTT GGGCTTGTGC 000480 000481 GTCTGGCCCA GACCCTGTGC GCCGAGCCCG AGGTCTATCC TCCCCGCACC TCTCACCTCG CGACCTTGCA GGAATCCGCG 000560 000561 GGCCCGGATG CTGCCCAGCT GACCCTCCTG CCCCGGGCCT GGCTGCAGAG AAAGTCTTCG GGCAGGAGGC CATCCTGTTC 000640 000641 CTGTCTTTAA AATGAGCACA ATAAAAGGGG GCAAATCCTC GAACGCGAAC CTGATCTCAT GTCACAGAAG CAACTTGCCA 000720 000721 TGAAATCCGC TAATGCGCTG CGACTCGCCC ACCAGGGCAG CGTGCGGCGG CCGAACTGCA CCTGCGTTTG TGAGCCTTGT 000800 000801 AGAAATGGAG CCCACCGGAT TCCCTCACCC GGAGAAATGC CCAAACTGAA ACTTGACTAC ACTTCCCTGG GCTGGTTCAC 000880 000881 GGTTTCATAA TCTCCCAGGT TTGCTGGCTG TGTCACCAAA TCCAAGCCAA ACCTGCTATA AACATGATCA CAGGCCACTG 000960 000961 ACCTCGCAGC ACTGACCGAT AACTCGGTGG CAAAATCAGC TCCTCTGGTC AGAGGTTATT AAAGCAGCGG CTGAATTCGT 001040 001041 GTTTGTTTTT TTGAAGTGGT CAGAAAAACG TAGTCTTCTT AAACCTACAA AAACAGTCAA ACACATTTGC AAATGTGCTT 001120 001121 TACTTGTATT GGTTCGAGTG CTGGAAGCTG TCTGGCGGTG AGCTTTTTCG TTGCGTGTGG TTTATGCAGA GCACCCGGGA 001200 001201 TGTTTTTCTC GTCTTTTACG TCTTGGTATC TTTTAAAAAT GTAGAATGTG TCTCTGATTG TTTCACAGTA TGTTCCTTAA 001280 001281 CAACCAGATA TGTAAGAAAA CGTTTGGGAT TGAGTGGTGA GAAAAGCAGA CTGGAAAGTA CAAATAAACC CAA |
Predicted Small Protein
Name | NONHSAT043955_smProtein_698:889 |
Length | 64 |
Molecular weight | 6973.0813 |
Aromaticity | 0.047619047619 |
Instability index | 51.6634920635 |
Isoelectric point | 9.69317626953 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0307268052366 |
Amino acid sequence | MSQKQLAMKSANALRLAHQGSVRRPNCTCVCEPCRNGAHRIPSPGEMPKLKLDYTSLGWF TVS |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLEEELLLLLLEE EEL |
PRMN | - |
PiMo | - |