Difference between revisions of "NONHSAT050885"

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sequence = <dnaseq>TCTGCGCCCCCGCCCTGCCCTGCGAGGCCGCCGCCGCGCGCCCCACCGTCTGTTGCAGTGGAGCGTGAGCCGCGGCTGCGGCTCCTGGTTCTTGTGGAAGGTACCCTTGGAGGGACTGAGATCCTAGGGATTGCTGGAGCCTGGCTGCATGGCCTGGCCACCCTGATGCCCTTGCGTTCTCCGTGACAGGACAGCAAGGCTGAGGAGAATGGCTCCCACAGCTTCATGCACTCCATGGACCCACAGCTGGAGCGGCAAATGGAAACCACCCAGAACCTGGTGGACTCCTACATGGCCATTGTCAACAAGACCGTGTGGGACCTCATGGTTGGTGCGAAGCCCAAGACCACCATGCATATCATGATCTACAATGTGCATGCACCGCCTCATGGGGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCGCTCGCGTGGGAACGAGAAGACACTCATGGAGGAGTCGGCAGAGTAGGCACAGCGGCGCGACGAGATGCTGCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCTTGGGAACCAGAAGACACTCGTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAAGAAATAGACACTCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCACTCGCGTAGGGACAAGAAGACACTCCTGCAGGAGTCGGCGGAGCAGGCAGACCAAGGAGTTCATCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACGTGCTGAAAGAGGCTCTCAGCATCATCGGCAACATCAACACGAACACCGTCAGCACAGCTACGGGGGCCCGTGGACGACGCCTAGCTGCAGCAGCCAAGCCCAGCAAAAGAATGGCATACGGGAGTTGCTGCACAAGCCTGGGTGCTCCACGCTGTCAGTGAGGCTCACCTCACAAAGATCTTTGGAGAGAAGGAGGTGGGGATCCGAGTGCAGTGAGAGCCTCCCCTGCCCCTGCCTGCCCACCCTGCCTGAGGACTCTACTCACCACCATGCTTATCAGCACCCACAAGCTCCTGGGGGGCTGGGGCTCCTGGACCAGGCTCATCAGCAAGCTTCAGGGCAGTGGCCGGGAATTTGCTGTGTCCCTCGTTGTAGTCACCACAAGCCGCAACATCTTCTCCAGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTTATGCATCTACCGGCGcccaccctcacgcccacccccaccccTGCAGAGATGTTGCACACCCTACCTTCATCTCCTCCATGTCCTGGGCCAGCCTGATGATGTCCTCCTCCAGTTGCCGCATCTTTGGCACTGCCCCCTGGCTGTGTTCTAGGGTGATGAACTTTCCTGCAGGAGGACAGGGCTCAGACGCTGAGGTCCCTCCGACGGCCCTGCAGCTCCCCCTGCCGTGCCCTGGCCTCCCACTAACTGATGACTTCTGTCTTTCCAGTACTGGATGAATCGAAGTTCTAGTTTCTCCGCTCGCTCCCTCAGGTCCACCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCAACACCCACCCCTGCCCTTCTTGGCCCATGCCAGGACTCAGTCACCTCCAGCTTCTCCATGACCTCCTGCATGGCCCGGTGGGTCTCCCCACTCACAGACTGGCCCCTAGTCACTGGGGCTGGGACCGCTGCCTCTGGCTTCTGCTGGGCCGAGGCCACCAGGTGAGCCATGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTCATAACCGTGCCTGCTCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCAACCTGAGGGCAAGAGGTGAGCATTCTTGTAGGGGCATACACAGAACGAACGGGGCAGAGAGGTGGAGTGCAGCCTCTTCCCTTGGGGCCTCAGAGAGTGCATCTGTTGGTCACAGGTGAAATGGTGTCTGACCACTGGCTCCTGGAAGGGATGAGGGTCCAGAGAAATCAGAAGGCAGGGAAACCAAGAGCATAAAGGGGTCTTGGAGGGACCACAGAGGAAGGTGGCAAAATGGGTACAGGGGGAGTCAGGCTCACCGTGGCCTCCCAGCTCTCCAGGTCCTCTGGGTTGCTTGGCATGGGCCGAGGTGCCTCCTCCTCACTGTCCAGATGTCCTCCTCTATCTCCTGTGGGGGGTGGCCAGAAGGGTCCTCAGACAGCCCAATAAGGGAGGTACTGTGGGCCCACCTCTGCCTCCACCCTCACTGTGTAACACTGAGCCAGCCACTACCCAGAGAGCAGCTGCTGTTCTTTATTTTTACTTTTAAGAACCAAGATcaggcatagtcccactaccagtcgatgtgggagttctgacccgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccccccgctcccaggaggacatcatattgatgccaaacttagtgcgggcacccggtcggcatagGGACCAGCTGTTCTAAAGGTCTCTTCCAACCTTTGCCTTTTTCTTTGCTGCGGCCAATTTGCTCTGTTGAGTTTCTTCTGCCATTGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACGTGAGCAAAATCCCAGTGAGCACTGATGAACACCTCCACTTGCCTACCAGGCAGCTGTGTGACTGAGCCCGAGGAGGCACAACTAGGGCCCCCATAGAATGCAGAACAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGACAAAGATGAAAGGGAAAGGGGGTGTGGCCAGGCAGCAGTATGTCCAGAGGGACCTGTGGCTCACAAGGAAAGCTGTCCATGCAACTGCTGTCCCCGCCTACTCTGAGGGGAGGGGCCGCCCCCTCTGGGAGAGGGGAGGGGCCG</dnaseq>|
 
sequence = <dnaseq>TCTGCGCCCCCGCCCTGCCCTGCGAGGCCGCCGCCGCGCGCCCCACCGTCTGTTGCAGTGGAGCGTGAGCCGCGGCTGCGGCTCCTGGTTCTTGTGGAAGGTACCCTTGGAGGGACTGAGATCCTAGGGATTGCTGGAGCCTGGCTGCATGGCCTGGCCACCCTGATGCCCTTGCGTTCTCCGTGACAGGACAGCAAGGCTGAGGAGAATGGCTCCCACAGCTTCATGCACTCCATGGACCCACAGCTGGAGCGGCAAATGGAAACCACCCAGAACCTGGTGGACTCCTACATGGCCATTGTCAACAAGACCGTGTGGGACCTCATGGTTGGTGCGAAGCCCAAGACCACCATGCATATCATGATCTACAATGTGCATGCACCGCCTCATGGGGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCGCTCGCGTGGGAACGAGAAGACACTCATGGAGGAGTCGGCAGAGTAGGCACAGCGGCGCGACGAGATGCTGCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCTTGGGAACCAGAAGACACTCGTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAAGAAATAGACACTCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCACTCGCGTAGGGACAAGAAGACACTCCTGCAGGAGTCGGCGGAGCAGGCAGACCAAGGAGTTCATCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACGTGCTGAAAGAGGCTCTCAGCATCATCGGCAACATCAACACGAACACCGTCAGCACAGCTACGGGGGCCCGTGGACGACGCCTAGCTGCAGCAGCCAAGCCCAGCAAAAGAATGGCATACGGGAGTTGCTGCACAAGCCTGGGTGCTCCACGCTGTCAGTGAGGCTCACCTCACAAAGATCTTTGGAGAGAAGGAGGTGGGGATCCGAGTGCAGTGAGAGCCTCCCCTGCCCCTGCCTGCCCACCCTGCCTGAGGACTCTACTCACCACCATGCTTATCAGCACCCACAAGCTCCTGGGGGGCTGGGGCTCCTGGACCAGGCTCATCAGCAAGCTTCAGGGCAGTGGCCGGGAATTTGCTGTGTCCCTCGTTGTAGTCACCACAAGCCGCAACATCTTCTCCAGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTTATGCATCTACCGGCGcccaccctcacgcccacccccaccccTGCAGAGATGTTGCACACCCTACCTTCATCTCCTCCATGTCCTGGGCCAGCCTGATGATGTCCTCCTCCAGTTGCCGCATCTTTGGCACTGCCCCCTGGCTGTGTTCTAGGGTGATGAACTTTCCTGCAGGAGGACAGGGCTCAGACGCTGAGGTCCCTCCGACGGCCCTGCAGCTCCCCCTGCCGTGCCCTGGCCTCCCACTAACTGATGACTTCTGTCTTTCCAGTACTGGATGAATCGAAGTTCTAGTTTCTCCGCTCGCTCCCTCAGGTCCACCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCAACACCCACCCCTGCCCTTCTTGGCCCATGCCAGGACTCAGTCACCTCCAGCTTCTCCATGACCTCCTGCATGGCCCGGTGGGTCTCCCCACTCACAGACTGGCCCCTAGTCACTGGGGCTGGGACCGCTGCCTCTGGCTTCTGCTGGGCCGAGGCCACCAGGTGAGCCATGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTCATAACCGTGCCTGCTCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCAACCTGAGGGCAAGAGGTGAGCATTCTTGTAGGGGCATACACAGAACGAACGGGGCAGAGAGGTGGAGTGCAGCCTCTTCCCTTGGGGCCTCAGAGAGTGCATCTGTTGGTCACAGGTGAAATGGTGTCTGACCACTGGCTCCTGGAAGGGATGAGGGTCCAGAGAAATCAGAAGGCAGGGAAACCAAGAGCATAAAGGGGTCTTGGAGGGACCACAGAGGAAGGTGGCAAAATGGGTACAGGGGGAGTCAGGCTCACCGTGGCCTCCCAGCTCTCCAGGTCCTCTGGGTTGCTTGGCATGGGCCGAGGTGCCTCCTCCTCACTGTCCAGATGTCCTCCTCTATCTCCTGTGGGGGGTGGCCAGAAGGGTCCTCAGACAGCCCAATAAGGGAGGTACTGTGGGCCCACCTCTGCCTCCACCCTCACTGTGTAACACTGAGCCAGCCACTACCCAGAGAGCAGCTGCTGTTCTTTATTTTTACTTTTAAGAACCAAGATcaggcatagtcccactaccagtcgatgtgggagttctgacccgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccccccgctcccaggaggacatcatattgatgccaaacttagtgcgggcacccggtcggcatagGGACCAGCTGTTCTAAAGGTCTCTTCCAACCTTTGCCTTTTTCTTTGCTGCGGCCAATTTGCTCTGTTGAGTTTCTTCTGCCATTGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACGTGAGCAAAATCCCAGTGAGCACTGATGAACACCTCCACTTGCCTACCAGGCAGCTGTGTGACTGAGCCCGAGGAGGCACAACTAGGGCCCCCATAGAATGCAGAACAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGACAAAGATGAAAGGGAAAGGGGGTGTGGCCAGGCAGCAGTATGTCCAGAGGGACCTGTGGCTCACAAGGAAAGCTGTCCATGCAACTGCTGTCCCCGCCTACTCTGAGGGGAGGGGCCGCCCCCTCTGGGAGAGGGGAGGGGCCG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG018078]][[Category:Transcripts]]

Latest revision as of 22:09, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT050885

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3080 nt

Genomic location

chr15-:100331042..100347100

Exon number

4

Exons

100331042..100333104,100339837..100340459,100341180..100341473,100347001..100347100

Genome context

Sequence
000001 TCTGCGCCCC CGCCCTGCCC TGCGAGGCCG CCGCCGCGCG CCCCACCGTC TGTTGCAGTG GAGCGTGAGC CGCGGCTGCG 000080
000081 GCTCCTGGTT CTTGTGGAAG GTACCCTTGG AGGGACTGAG ATCCTAGGGA TTGCTGGAGC CTGGCTGCAT GGCCTGGCCA 000160
000161 CCCTGATGCC CTTGCGTTCT CCGTGACAGG ACAGCAAGGC TGAGGAGAAT GGCTCCCACA GCTTCATGCA CTCCATGGAC 000240
000241 CCACAGCTGG AGCGGCAAAT GGAAACCACC CAGAACCTGG TGGACTCCTA CATGGCCATT GTCAACAAGA CCGTGTGGGA 000320
000321 CCTCATGGTT GGTGCGAAGC CCAAGACCAC CATGCATATC ATGATCTACA ATGTGCATGC ACCGCCTCAT GGGGACCAAG 000400
000401 GAGTTCATCT TCTCGGAGCT GCTGTCCAAC CTGCGCTCGC GTGGGAACGA GAAGACACTC ATGGAGGAGT CGGCAGAGTA 000480
000481 GGCACAGCGG CGCGACGAGA TGCTGCTTCT CAGAGCTGCT GTCCAACCTG CACTCGCTTG GGAACCAGAA GACACTCGTG 000560
000561 GAGGAGTCGG CAGAGCAGGC ACAGCGGCGC GACGAGACTC GCGTGGGAAG AAATAGACAC TCCTGGAGGA GTCGGCAGAG 000640
000641 CAGGCACAGC GGCGCGACGA GACTCGCGTG GGAACGAGAA GACACTCCTG GAGGAGTCGG CAGAGCAGGC AGACCAAGGA 000720
000721 GTTCATCTTC TCGGAGCTGC TGTCCAACCT GCACTCGCGT AGGGACAAGA AGACACTCCT GCAGGAGTCG GCGGAGCAGG 000800
000801 CAGACCAAGG AGTTCATCTT CTCAGAGCTG CTGTCCAACC TGCACTCGCG TGGGAACGAG AAGACACTCC TGGAGGAGTC 000880
000881 GGCGGAGCAG GCACAGCGGC GCGACGAGAT GCTGCGCATG CACCACGTGC TGAAAGAGGC TCTCAGCATC ATCGGCAACA 000960
000961 TCAACACGAA CACCGTCAGC ACAGCTACGG GGGCCCGTGG ACGACGCCTA GCTGCAGCAG CCAAGCCCAG CAAAAGAATG 001040
001041 GCATACGGGA GTTGCTGCAC AAGCCTGGGT GCTCCACGCT GTCAGTGAGG CTCACCTCAC AAAGATCTTT GGAGAGAAGG 001120
001121 AGGTGGGGAT CCGAGTGCAG TGAGAGCCTC CCCTGCCCCT GCCTGCCCAC CCTGCCTGAG GACTCTACTC ACCACCATGC 001200
001201 TTATCAGCAC CCACAAGCTC CTGGGGGGCT GGGGCTCCTG GACCAGGCTC ATCAGCAAGC TTCAGGGCAG TGGCCGGGAA 001280
001281 TTTGCTGTGT CCCTCGTTGT AGTCACCACA AGCCGCAACA TCTTCTCCAG CAGCTCCAGC AGCTTCACCT GGAGGGAGGG 001360
001361 GTGCTCAGCT GTTATGCATC TACCGGCGcc caccctcacg cccaccccca ccccTGCAGA GATGTTGCAC ACCCTACCTT 001440
001441 CATCTCCTCC ATGTCCTGGG CCAGCCTGAT GATGTCCTCC TCCAGTTGCC GCATCTTTGG CACTGCCCCC TGGCTGTGTT 001520
001521 CTAGGGTGAT GAACTTTCCT GCAGGAGGAC AGGGCTCAGA CGCTGAGGTC CCTCCGACGG CCCTGCAGCT CCCCCTGCCG 001600
001601 TGCCCTGGCC TCCCACTAAC TGATGACTTC TGTCTTTCCA GTACTGGATG AATCGAAGTT CTAGTTTCTC CGCTCGCTCC 001680
001681 CTCAGGTCCA CCTTCTCCTC CAGGAGGTCC ATAAGGCCAC TCTGGAGCCA AAATAATGGG GTCACATCTC GGCAGCAACA 001760
001761 CCCACCCCTG CCCTTCTTGG CCCATGCCAG GACTCAGTCA CCTCCAGCTT CTCCATGACC TCCTGCATGG CCCGGTGGGT 001840
001841 CTCCCCACTC ACAGACTGGC CCCTAGTCAC TGGGGCTGGG ACCGCTGCCT CTGGCTTCTG CTGGGCCGAG GCCACCAGGT 001920
001921 GAGCCATGCG CTGGCAGCAC ACCCTCTGCT CTTTCACCTG CTCTCATAAC CGTGCCTGCT CCTCCTGGGC ATTGGCTCCA 002000
002001 GCGGAGTTGA AAAATGCAAC CTGAGGGCAA GAGGTGAGCA TTCTTGTAGG GGCATACACA GAACGAACGG GGCAGAGAGG 002080
002081 TGGAGTGCAG CCTCTTCCCT TGGGGCCTCA GAGAGTGCAT CTGTTGGTCA CAGGTGAAAT GGTGTCTGAC CACTGGCTCC 002160
002161 TGGAAGGGAT GAGGGTCCAG AGAAATCAGA AGGCAGGGAA ACCAAGAGCA TAAAGGGGTC TTGGAGGGAC CACAGAGGAA 002240
002241 GGTGGCAAAA TGGGTACAGG GGGAGTCAGG CTCACCGTGG CCTCCCAGCT CTCCAGGTCC TCTGGGTTGC TTGGCATGGG 002320
002321 CCGAGGTGCC TCCTCCTCAC TGTCCAGATG TCCTCCTCTA TCTCCTGTGG GGGGTGGCCA GAAGGGTCCT CAGACAGCCC 002400
002401 AATAAGGGAG GTACTGTGGG CCCACCTCTG CCTCCACCCT CACTGTGTAA CACTGAGCCA GCCACTACCC AGAGAGCAGC 002480
002481 TGCTGTTCTT TATTTTTACT TTTAAGAACC AAGATcaggc atagtcccac taccagtcga tgtgggagtt ctgacccgct 002560
002561 ccctttctga cctgggccag ttcagccatc cttaggcaac ttggtggccc cccgctccca ggaggacatc atattgatgc 002640
002641 caaacttagt gcgggcaccc ggtcggcata gGGACCAGCT GTTCTAAAGG TCTCTTCCAA CCTTTGCCTT TTTCTTTGCT 002720
002721 GCGGCCAATT TGCTCTGTTG AGTTTCTTCT GCCATTGCGG GGTGGGGAGG GAGGCGGGGT TGGGGCCACG TGAGCAAAAT 002800
002801 CCCAGTGAGC ACTGATGAAC ACCTCCACTT GCCTACCAGG CAGCTGTGTG ACTGAGCCCG AGGAGGCACA ACTAGGGCCC 002880
002881 CCATAGAATG CAGAACAGGG GCGTGGCCTT AATGCTCCAA GCCCATTGGT CAATGACAAA GATGAAAGGG AAAGGGGGTG 002960
002961 TGGCCAGGCA GCAGTATGTC CAGAGGGACC TGTGGCTCAC AAGGAAAGCT GTCCATGCAA CTGCTGTCCC CGCCTACTCT 003040
003041 GAGGGGAGGG GCCGCCCCCT CTGGGAGAGG GGAGGGGCCG
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Predicted Small Protein

Name NONHSAT050885_smProtein_1196:1468
Length 91
Molecular weight 9549.9222
Aromaticity 0.0666666666667
Instability index 61.6266666667
Isoelectric point 9.49505615234
Runs 16
Runs residual 0.0379188712522
Runs probability 0.0363948507331
Amino acid sequence MLISTHKLLGGWGSWTRLISKLQGSGREFAVSLVVVTTSRNIFSSSSSSFTWREGCSAVM
HLPAPTLTPTPTPAEMLHTLPSSPPCPGPA
Secondary structure LEEEEHHHLLLLHHHHHHHHHHLLLLEEEEEEEEEEELLLLEEELLLLLLEELLLLLEEE
ELLLLLLLLLLLLHHHHLLLLLLLLLLLLL
PRMN -
PiMo -