Difference between revisions of "NONHSAT050885"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TCTGCGCCCCCGCCCTGCCCTGCGAGGCCGCCGCCGCGCGCCCCACCGTCTGTTGCAGTGGAGCGTGAGCCGCGGCTGCGGCTCCTGGTTCTTGTGGAAGGTACCCTTGGAGGGACTGAGATCCTAGGGATTGCTGGAGCCTGGCTGCATGGCCTGGCCACCCTGATGCCCTTGCGTTCTCCGTGACAGGACAGCAAGGCTGAGGAGAATGGCTCCCACAGCTTCATGCACTCCATGGACCCACAGCTGGAGCGGCAAATGGAAACCACCCAGAACCTGGTGGACTCCTACATGGCCATTGTCAACAAGACCGTGTGGGACCTCATGGTTGGTGCGAAGCCCAAGACCACCATGCATATCATGATCTACAATGTGCATGCACCGCCTCATGGGGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCGCTCGCGTGGGAACGAGAAGACACTCATGGAGGAGTCGGCAGAGTAGGCACAGCGGCGCGACGAGATGCTGCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCTTGGGAACCAGAAGACACTCGTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAAGAAATAGACACTCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCACTCGCGTAGGGACAAGAAGACACTCCTGCAGGAGTCGGCGGAGCAGGCAGACCAAGGAGTTCATCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACGTGCTGAAAGAGGCTCTCAGCATCATCGGCAACATCAACACGAACACCGTCAGCACAGCTACGGGGGCCCGTGGACGACGCCTAGCTGCAGCAGCCAAGCCCAGCAAAAGAATGGCATACGGGAGTTGCTGCACAAGCCTGGGTGCTCCACGCTGTCAGTGAGGCTCACCTCACAAAGATCTTTGGAGAGAAGGAGGTGGGGATCCGAGTGCAGTGAGAGCCTCCCCTGCCCCTGCCTGCCCACCCTGCCTGAGGACTCTACTCACCACCATGCTTATCAGCACCCACAAGCTCCTGGGGGGCTGGGGCTCCTGGACCAGGCTCATCAGCAAGCTTCAGGGCAGTGGCCGGGAATTTGCTGTGTCCCTCGTTGTAGTCACCACAAGCCGCAACATCTTCTCCAGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTTATGCATCTACCGGCGcccaccctcacgcccacccccaccccTGCAGAGATGTTGCACACCCTACCTTCATCTCCTCCATGTCCTGGGCCAGCCTGATGATGTCCTCCTCCAGTTGCCGCATCTTTGGCACTGCCCCCTGGCTGTGTTCTAGGGTGATGAACTTTCCTGCAGGAGGACAGGGCTCAGACGCTGAGGTCCCTCCGACGGCCCTGCAGCTCCCCCTGCCGTGCCCTGGCCTCCCACTAACTGATGACTTCTGTCTTTCCAGTACTGGATGAATCGAAGTTCTAGTTTCTCCGCTCGCTCCCTCAGGTCCACCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCAACACCCACCCCTGCCCTTCTTGGCCCATGCCAGGACTCAGTCACCTCCAGCTTCTCCATGACCTCCTGCATGGCCCGGTGGGTCTCCCCACTCACAGACTGGCCCCTAGTCACTGGGGCTGGGACCGCTGCCTCTGGCTTCTGCTGGGCCGAGGCCACCAGGTGAGCCATGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTCATAACCGTGCCTGCTCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCAACCTGAGGGCAAGAGGTGAGCATTCTTGTAGGGGCATACACAGAACGAACGGGGCAGAGAGGTGGAGTGCAGCCTCTTCCCTTGGGGCCTCAGAGAGTGCATCTGTTGGTCACAGGTGAAATGGTGTCTGACCACTGGCTCCTGGAAGGGATGAGGGTCCAGAGAAATCAGAAGGCAGGGAAACCAAGAGCATAAAGGGGTCTTGGAGGGACCACAGAGGAAGGTGGCAAAATGGGTACAGGGGGAGTCAGGCTCACCGTGGCCTCCCAGCTCTCCAGGTCCTCTGGGTTGCTTGGCATGGGCCGAGGTGCCTCCTCCTCACTGTCCAGATGTCCTCCTCTATCTCCTGTGGGGGGTGGCCAGAAGGGTCCTCAGACAGCCCAATAAGGGAGGTACTGTGGGCCCACCTCTGCCTCCACCCTCACTGTGTAACACTGAGCCAGCCACTACCCAGAGAGCAGCTGCTGTTCTTTATTTTTACTTTTAAGAACCAAGATcaggcatagtcccactaccagtcgatgtgggagttctgacccgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccccccgctcccaggaggacatcatattgatgccaaacttagtgcgggcacccggtcggcatagGGACCAGCTGTTCTAAAGGTCTCTTCCAACCTTTGCCTTTTTCTTTGCTGCGGCCAATTTGCTCTGTTGAGTTTCTTCTGCCATTGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACGTGAGCAAAATCCCAGTGAGCACTGATGAACACCTCCACTTGCCTACCAGGCAGCTGTGTGACTGAGCCCGAGGAGGCACAACTAGGGCCCCCATAGAATGCAGAACAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGACAAAGATGAAAGGGAAAGGGGGTGTGGCCAGGCAGCAGTATGTCCAGAGGGACCTGTGGCTCACAAGGAAAGCTGTCCATGCAACTGCTGTCCCCGCCTACTCTGAGGGGAGGGGCCGCCCCCTCTGGGAGAGGGGAGGGGCCG</dnaseq>| | sequence = <dnaseq>TCTGCGCCCCCGCCCTGCCCTGCGAGGCCGCCGCCGCGCGCCCCACCGTCTGTTGCAGTGGAGCGTGAGCCGCGGCTGCGGCTCCTGGTTCTTGTGGAAGGTACCCTTGGAGGGACTGAGATCCTAGGGATTGCTGGAGCCTGGCTGCATGGCCTGGCCACCCTGATGCCCTTGCGTTCTCCGTGACAGGACAGCAAGGCTGAGGAGAATGGCTCCCACAGCTTCATGCACTCCATGGACCCACAGCTGGAGCGGCAAATGGAAACCACCCAGAACCTGGTGGACTCCTACATGGCCATTGTCAACAAGACCGTGTGGGACCTCATGGTTGGTGCGAAGCCCAAGACCACCATGCATATCATGATCTACAATGTGCATGCACCGCCTCATGGGGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCGCTCGCGTGGGAACGAGAAGACACTCATGGAGGAGTCGGCAGAGTAGGCACAGCGGCGCGACGAGATGCTGCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCTTGGGAACCAGAAGACACTCGTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAAGAAATAGACACTCCTGGAGGAGTCGGCAGAGCAGGCACAGCGGCGCGACGAGACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCAGAGCAGGCAGACCAAGGAGTTCATCTTCTCGGAGCTGCTGTCCAACCTGCACTCGCGTAGGGACAAGAAGACACTCCTGCAGGAGTCGGCGGAGCAGGCAGACCAAGGAGTTCATCTTCTCAGAGCTGCTGTCCAACCTGCACTCGCGTGGGAACGAGAAGACACTCCTGGAGGAGTCGGCGGAGCAGGCACAGCGGCGCGACGAGATGCTGCGCATGCACCACGTGCTGAAAGAGGCTCTCAGCATCATCGGCAACATCAACACGAACACCGTCAGCACAGCTACGGGGGCCCGTGGACGACGCCTAGCTGCAGCAGCCAAGCCCAGCAAAAGAATGGCATACGGGAGTTGCTGCACAAGCCTGGGTGCTCCACGCTGTCAGTGAGGCTCACCTCACAAAGATCTTTGGAGAGAAGGAGGTGGGGATCCGAGTGCAGTGAGAGCCTCCCCTGCCCCTGCCTGCCCACCCTGCCTGAGGACTCTACTCACCACCATGCTTATCAGCACCCACAAGCTCCTGGGGGGCTGGGGCTCCTGGACCAGGCTCATCAGCAAGCTTCAGGGCAGTGGCCGGGAATTTGCTGTGTCCCTCGTTGTAGTCACCACAAGCCGCAACATCTTCTCCAGCAGCTCCAGCAGCTTCACCTGGAGGGAGGGGTGCTCAGCTGTTATGCATCTACCGGCGcccaccctcacgcccacccccaccccTGCAGAGATGTTGCACACCCTACCTTCATCTCCTCCATGTCCTGGGCCAGCCTGATGATGTCCTCCTCCAGTTGCCGCATCTTTGGCACTGCCCCCTGGCTGTGTTCTAGGGTGATGAACTTTCCTGCAGGAGGACAGGGCTCAGACGCTGAGGTCCCTCCGACGGCCCTGCAGCTCCCCCTGCCGTGCCCTGGCCTCCCACTAACTGATGACTTCTGTCTTTCCAGTACTGGATGAATCGAAGTTCTAGTTTCTCCGCTCGCTCCCTCAGGTCCACCTTCTCCTCCAGGAGGTCCATAAGGCCACTCTGGAGCCAAAATAATGGGGTCACATCTCGGCAGCAACACCCACCCCTGCCCTTCTTGGCCCATGCCAGGACTCAGTCACCTCCAGCTTCTCCATGACCTCCTGCATGGCCCGGTGGGTCTCCCCACTCACAGACTGGCCCCTAGTCACTGGGGCTGGGACCGCTGCCTCTGGCTTCTGCTGGGCCGAGGCCACCAGGTGAGCCATGCGCTGGCAGCACACCCTCTGCTCTTTCACCTGCTCTCATAACCGTGCCTGCTCCTCCTGGGCATTGGCTCCAGCGGAGTTGAAAAATGCAACCTGAGGGCAAGAGGTGAGCATTCTTGTAGGGGCATACACAGAACGAACGGGGCAGAGAGGTGGAGTGCAGCCTCTTCCCTTGGGGCCTCAGAGAGTGCATCTGTTGGTCACAGGTGAAATGGTGTCTGACCACTGGCTCCTGGAAGGGATGAGGGTCCAGAGAAATCAGAAGGCAGGGAAACCAAGAGCATAAAGGGGTCTTGGAGGGACCACAGAGGAAGGTGGCAAAATGGGTACAGGGGGAGTCAGGCTCACCGTGGCCTCCCAGCTCTCCAGGTCCTCTGGGTTGCTTGGCATGGGCCGAGGTGCCTCCTCCTCACTGTCCAGATGTCCTCCTCTATCTCCTGTGGGGGGTGGCCAGAAGGGTCCTCAGACAGCCCAATAAGGGAGGTACTGTGGGCCCACCTCTGCCTCCACCCTCACTGTGTAACACTGAGCCAGCCACTACCCAGAGAGCAGCTGCTGTTCTTTATTTTTACTTTTAAGAACCAAGATcaggcatagtcccactaccagtcgatgtgggagttctgacccgctccctttctgacctgggccagttcagccatccttaggcaacttggtggccccccgctcccaggaggacatcatattgatgccaaacttagtgcgggcacccggtcggcatagGGACCAGCTGTTCTAAAGGTCTCTTCCAACCTTTGCCTTTTTCTTTGCTGCGGCCAATTTGCTCTGTTGAGTTTCTTCTGCCATTGCGGGGTGGGGAGGGAGGCGGGGTTGGGGCCACGTGAGCAAAATCCCAGTGAGCACTGATGAACACCTCCACTTGCCTACCAGGCAGCTGTGTGACTGAGCCCGAGGAGGCACAACTAGGGCCCCCATAGAATGCAGAACAGGGGCGTGGCCTTAATGCTCCAAGCCCATTGGTCAATGACAAAGATGAAAGGGAAAGGGGGTGTGGCCAGGCAGCAGTATGTCCAGAGGGACCTGTGGCTCACAAGGAAAGCTGTCCATGCAACTGCTGTCCCCGCCTACTCTGAGGGGAGGGGCCGCCCCCTCTGGGAGAGGGGAGGGGCCG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG018078]][[Category:Transcripts]] |
Latest revision as of 22:09, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT050885 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3080 nt |
Genomic location |
chr15-:100331042..100347100 |
Exon number |
4 |
Exons |
100331042..100333104,100339837..100340459,100341180..100341473,100347001..100347100 |
Genome context |
|
Sequence |
000001 TCTGCGCCCC CGCCCTGCCC TGCGAGGCCG CCGCCGCGCG CCCCACCGTC TGTTGCAGTG GAGCGTGAGC CGCGGCTGCG 000080
000081 GCTCCTGGTT CTTGTGGAAG GTACCCTTGG AGGGACTGAG ATCCTAGGGA TTGCTGGAGC CTGGCTGCAT GGCCTGGCCA 000160 000161 CCCTGATGCC CTTGCGTTCT CCGTGACAGG ACAGCAAGGC TGAGGAGAAT GGCTCCCACA GCTTCATGCA CTCCATGGAC 000240 000241 CCACAGCTGG AGCGGCAAAT GGAAACCACC CAGAACCTGG TGGACTCCTA CATGGCCATT GTCAACAAGA CCGTGTGGGA 000320 000321 CCTCATGGTT GGTGCGAAGC CCAAGACCAC CATGCATATC ATGATCTACA ATGTGCATGC ACCGCCTCAT GGGGACCAAG 000400 000401 GAGTTCATCT TCTCGGAGCT GCTGTCCAAC CTGCGCTCGC GTGGGAACGA GAAGACACTC ATGGAGGAGT CGGCAGAGTA 000480 000481 GGCACAGCGG CGCGACGAGA TGCTGCTTCT CAGAGCTGCT GTCCAACCTG CACTCGCTTG GGAACCAGAA GACACTCGTG 000560 000561 GAGGAGTCGG CAGAGCAGGC ACAGCGGCGC GACGAGACTC GCGTGGGAAG AAATAGACAC TCCTGGAGGA GTCGGCAGAG 000640 000641 CAGGCACAGC GGCGCGACGA GACTCGCGTG GGAACGAGAA GACACTCCTG GAGGAGTCGG CAGAGCAGGC AGACCAAGGA 000720 000721 GTTCATCTTC TCGGAGCTGC TGTCCAACCT GCACTCGCGT AGGGACAAGA AGACACTCCT GCAGGAGTCG GCGGAGCAGG 000800 000801 CAGACCAAGG AGTTCATCTT CTCAGAGCTG CTGTCCAACC TGCACTCGCG TGGGAACGAG AAGACACTCC TGGAGGAGTC 000880 000881 GGCGGAGCAG GCACAGCGGC GCGACGAGAT GCTGCGCATG CACCACGTGC TGAAAGAGGC TCTCAGCATC ATCGGCAACA 000960 000961 TCAACACGAA CACCGTCAGC ACAGCTACGG GGGCCCGTGG ACGACGCCTA GCTGCAGCAG CCAAGCCCAG CAAAAGAATG 001040 001041 GCATACGGGA GTTGCTGCAC AAGCCTGGGT GCTCCACGCT GTCAGTGAGG CTCACCTCAC AAAGATCTTT GGAGAGAAGG 001120 001121 AGGTGGGGAT CCGAGTGCAG TGAGAGCCTC CCCTGCCCCT GCCTGCCCAC CCTGCCTGAG GACTCTACTC ACCACCATGC 001200 001201 TTATCAGCAC CCACAAGCTC CTGGGGGGCT GGGGCTCCTG GACCAGGCTC ATCAGCAAGC TTCAGGGCAG TGGCCGGGAA 001280 001281 TTTGCTGTGT CCCTCGTTGT AGTCACCACA AGCCGCAACA TCTTCTCCAG CAGCTCCAGC AGCTTCACCT GGAGGGAGGG 001360 001361 GTGCTCAGCT GTTATGCATC TACCGGCGcc caccctcacg cccaccccca ccccTGCAGA GATGTTGCAC ACCCTACCTT 001440 001441 CATCTCCTCC ATGTCCTGGG CCAGCCTGAT GATGTCCTCC TCCAGTTGCC GCATCTTTGG CACTGCCCCC TGGCTGTGTT 001520 001521 CTAGGGTGAT GAACTTTCCT GCAGGAGGAC AGGGCTCAGA CGCTGAGGTC CCTCCGACGG CCCTGCAGCT CCCCCTGCCG 001600 001601 TGCCCTGGCC TCCCACTAAC TGATGACTTC TGTCTTTCCA GTACTGGATG AATCGAAGTT CTAGTTTCTC CGCTCGCTCC 001680 001681 CTCAGGTCCA CCTTCTCCTC CAGGAGGTCC ATAAGGCCAC TCTGGAGCCA AAATAATGGG GTCACATCTC GGCAGCAACA 001760 001761 CCCACCCCTG CCCTTCTTGG CCCATGCCAG GACTCAGTCA CCTCCAGCTT CTCCATGACC TCCTGCATGG CCCGGTGGGT 001840 001841 CTCCCCACTC ACAGACTGGC CCCTAGTCAC TGGGGCTGGG ACCGCTGCCT CTGGCTTCTG CTGGGCCGAG GCCACCAGGT 001920 001921 GAGCCATGCG CTGGCAGCAC ACCCTCTGCT CTTTCACCTG CTCTCATAAC CGTGCCTGCT CCTCCTGGGC ATTGGCTCCA 002000 002001 GCGGAGTTGA AAAATGCAAC CTGAGGGCAA GAGGTGAGCA TTCTTGTAGG GGCATACACA GAACGAACGG GGCAGAGAGG 002080 002081 TGGAGTGCAG CCTCTTCCCT TGGGGCCTCA GAGAGTGCAT CTGTTGGTCA CAGGTGAAAT GGTGTCTGAC CACTGGCTCC 002160 002161 TGGAAGGGAT GAGGGTCCAG AGAAATCAGA AGGCAGGGAA ACCAAGAGCA TAAAGGGGTC TTGGAGGGAC CACAGAGGAA 002240 002241 GGTGGCAAAA TGGGTACAGG GGGAGTCAGG CTCACCGTGG CCTCCCAGCT CTCCAGGTCC TCTGGGTTGC TTGGCATGGG 002320 002321 CCGAGGTGCC TCCTCCTCAC TGTCCAGATG TCCTCCTCTA TCTCCTGTGG GGGGTGGCCA GAAGGGTCCT CAGACAGCCC 002400 002401 AATAAGGGAG GTACTGTGGG CCCACCTCTG CCTCCACCCT CACTGTGTAA CACTGAGCCA GCCACTACCC AGAGAGCAGC 002480 002481 TGCTGTTCTT TATTTTTACT TTTAAGAACC AAGATcaggc atagtcccac taccagtcga tgtgggagtt ctgacccgct 002560 002561 ccctttctga cctgggccag ttcagccatc cttaggcaac ttggtggccc cccgctccca ggaggacatc atattgatgc 002640 002641 caaacttagt gcgggcaccc ggtcggcata gGGACCAGCT GTTCTAAAGG TCTCTTCCAA CCTTTGCCTT TTTCTTTGCT 002720 002721 GCGGCCAATT TGCTCTGTTG AGTTTCTTCT GCCATTGCGG GGTGGGGAGG GAGGCGGGGT TGGGGCCACG TGAGCAAAAT 002800 002801 CCCAGTGAGC ACTGATGAAC ACCTCCACTT GCCTACCAGG CAGCTGTGTG ACTGAGCCCG AGGAGGCACA ACTAGGGCCC 002880 002881 CCATAGAATG CAGAACAGGG GCGTGGCCTT AATGCTCCAA GCCCATTGGT CAATGACAAA GATGAAAGGG AAAGGGGGTG 002960 002961 TGGCCAGGCA GCAGTATGTC CAGAGGGACC TGTGGCTCAC AAGGAAAGCT GTCCATGCAA CTGCTGTCCC CGCCTACTCT 003040 003041 GAGGGGAGGG GCCGCCCCCT CTGGGAGAGG GGAGGGGCCG |
Predicted Small Protein
Name | NONHSAT050885_smProtein_1196:1468 |
Length | 91 |
Molecular weight | 9549.9222 |
Aromaticity | 0.0666666666667 |
Instability index | 61.6266666667 |
Isoelectric point | 9.49505615234 |
Runs | 16 |
Runs residual | 0.0379188712522 |
Runs probability | 0.0363948507331 |
Amino acid sequence | MLISTHKLLGGWGSWTRLISKLQGSGREFAVSLVVVTTSRNIFSSSSSSFTWREGCSAVM HLPAPTLTPTPTPAEMLHTLPSSPPCPGPA |
Secondary structure | LEEEEHHHLLLLHHHHHHHHHHLLLLEEEEEEEEEEELLLLEEELLLLLLEELLLLLEEE ELLLLLLLLLLLLHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |