Difference between revisions of "NONHSAT052979"
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sequence = <dnaseq>AGTCAGCCTCCTTCTTCCCGACCTCAACTCCAGGCCCTCAGGACTCCAAGAAACTGCTCTGTGTTTGGAGTGTAGATCTCTTAAGTGCGGACTTCTTGTCTTTGGGAAAACCAATAGACGGCTCTTaaaaaaaaaaaaaaaaaaaaGGAAGCGCTTGAAAAATGGATCATCAGGGGAATCACGCAGAGTCCCTAAGCAGGCCTACGATCCGAAGCAGCTTATGTCTTCAAAGTTCCCAAACACTTAGAATCTAGGAGAACTTGTGAGGAAACTCCCAGAAAACCAACACTGAAGCTGTAGACAGTTTGGTGGGAGAGGCAGCAGCATGCTTTGGCTACTTTTTCAAAATGCAGGAGTCTTGAGCATCCAGCGGAACTGAGCAGTGGTGCGCCAGGGTTGGGCCCTTCACCTGGCCTCCGTCCCCCATAAAATGTGTTTACAAAATATGGGAAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAACCTCTGCTCACCACGGTCAAGGGGGGGACAGGCAACGGGCTGGAGATCATGCTGGACATTCAGCAGGATGAGT</dnaseq>| | sequence = <dnaseq>AGTCAGCCTCCTTCTTCCCGACCTCAACTCCAGGCCCTCAGGACTCCAAGAAACTGCTCTGTGTTTGGAGTGTAGATCTCTTAAGTGCGGACTTCTTGTCTTTGGGAAAACCAATAGACGGCTCTTaaaaaaaaaaaaaaaaaaaaGGAAGCGCTTGAAAAATGGATCATCAGGGGAATCACGCAGAGTCCCTAAGCAGGCCTACGATCCGAAGCAGCTTATGTCTTCAAAGTTCCCAAACACTTAGAATCTAGGAGAACTTGTGAGGAAACTCCCAGAAAACCAACACTGAAGCTGTAGACAGTTTGGTGGGAGAGGCAGCAGCATGCTTTGGCTACTTTTTCAAAATGCAGGAGTCTTGAGCATCCAGCGGAACTGAGCAGTGGTGCGCCAGGGTTGGGCCCTTCACCTGGCCTCCGTCCCCCATAAAATGTGTTTACAAAATATGGGAAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAACCTCTGCTCACCACGGTCAAGGGGGGGACAGGCAACGGGCTGGAGATCATGCTGGACATTCAGCAGGATGAGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG021499]] | + | [[Category:Sense]][[Category:NONHSAG021499]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT052979 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
559 nt |
| Genomic location |
chr17-:31438959..31618125 |
| Exon number |
2 |
| Exons |
31438959..31439085,31617694..31618125 |
| Genome context |
|
| Sequence |
000001 AGTCAGCCTC CTTCTTCCCG ACCTCAACTC CAGGCCCTCA GGACTCCAAG AAACTGCTCT GTGTTTGGAG TGTAGATCTC 000080
000081 TTAAGTGCGG ACTTCTTGTC TTTGGGAAAA CCAATAGACG GCTCTTaaaa aaaaaaaaaa aaaaaaGGAA GCGCTTGAAA 000160 000161 AATGGATCAT CAGGGGAATC ACGCAGAGTC CCTAAGCAGG CCTACGATCC GAAGCAGCTT ATGTCTTCAA AGTTCCCAAA 000240 000241 CACTTAGAAT CTAGGAGAAC TTGTGAGGAA ACTCCCAGAA AACCAACACT GAAGCTGTAG ACAGTTTGGT GGGAGAGGCA 000320 000321 GCAGCATGCT TTGGCTACTT TTTCAAAATG CAGGAGTCTT GAGCATCCAG CGGAACTGAG CAGTGGTGCG CCAGGGTTGG 000400 000401 GCCCTTCACC TGGCCTCCGT CCCCCATAAA ATGTGTTTAC AAAATATGGG AAGTGTTACA TGTTTAACTC AGGCGAGGAT 000480 000481 GGCAAACCTC TGCTCACCAC GGTCAAGGGG GGGACAGGCA ACGGGCTGGA GATCATGCTG GACATTCAGC AGGATGAGT |
Predicted Small Protein
| Name | NONHSAT052979_smProtein_161:253 |
| Length | 31 |
| Molecular weight | 3366.7431 |
| Aromaticity | 0.0 |
| Instability index | 98.3566666667 |
| Isoelectric point | 8.04498291016 |
| Runs | 5 |
| Runs residual | 0.0355855855856 |
| Runs probability | 0.0133545310016 |
| Amino acid sequence | MDHQGNHAESLSRPTIRSSLCLQSSQTLRI |
| Secondary structure | LLLLLLLLLLLLLLLLLHHHLLLLLLEELL |
| PRMN | - |
| PiMo | - |
