Difference between revisions of "NONHSAT053202"

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sequence = <dnaseq>CTGAATGTGCTGTTTGCCTCGGACATCAAACATCTCACAGACTGCCTGGAAGAAGGTGGAGCAGACTGGGGTTAATGGTCAGCAGCAGCAGCATCCCCACCACTGGGGCTATCCCTTTTTAGGCCCTTACCATGGGCCAAACACTGAGCCGTGTGCTTCGTGTAACTTCTAAGCACGCTTACCTGATAGGGTGACAGCAAAGACTCGAAGAGGTGCCTGGGCTTGGCACATAGTAGCTATTGCTACTATTATGAATGTTGTTTTGTCTTTGTTTTTGTTTTGAGACAGGGCCTCACTCTGTTGCCCAGGTTGGAGTACAGCAGTGCCATCATAGCTCACTGAAGCCTCAACCTCCCTGGGTTTGAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGTGCGCCACCAAGCCCAGCCAATTGTTTGTATTTTCAGTAGAGACTGGTTTTGCCAAGTCGCCCAGGCTGGTTTCGAACTCTGGGGTTCAAGCAATCTGCCCACCTCAGCCTCCCAAAGTGCTGGCATTACAGGCGTGTGCCACTGCGCCCAGCCATTATGAATGTCAATATTGACATGATCTTGTATCCTTATGCCCACACTGGGAGAGGTCTGATTGTCCCCATGTTCCTGGTGTGGAACCACATGGAAGAGGCCTATGTTATCCCAACAGTGCAGAAGCACAGCCTGAGTCTCTTCTTTGGCTGAGCCAAGGGCGTGCTGGAGAGGCCTGACAGAAGAAGGAGCGGCCCTTGTGACCAGTGCCCTTTTGGTTCACAAGGAACTTCTCCTCTTGTTGAAGTGACTTGGCTGAGCTTGCTACTTCTGCTTTGAGAGTCAAATATCAGGATCAAGACTTTAATTATCCCCAATTTACAGATGATGAAACCATATTGGGCAGGAAAGAAAGTCACCCCAGGAGAGCAAGTTGGACCTGAGCACTGGCTGAGGACAAAGGGGAATGATAATTTGGGATGTAACTTGTTAAGGGGTCTCACAAGTGTTCTTGTGATCCAGGTGTCGAGAGGATACAGCAGAAAGGTTGCCAGGGAGATGAGGGTAGGGTACACCACAAGAGTGGGAGAAATTAAAGAGAACACGCAACAAAGCCTTGGGACACTGGGAGGGGGATGGACCACCCAGTTTTGTGCTATGGGAGAAGAGAGCAAGAAAAGGAATCTGTGTTAAATCCCGACAGCCTGCATGAGAAGCAAATGCCCTTCATTTTCTTCATCAGCGGCGAGACTGGCATCCCTGCAGCTTTGGGAGACCATGCTAGTGTAGATGCCAGCTCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGAGGAGAGTTCAGCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTAATTATTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACACCTGTGTTCGGTTTCCAGTTCTACCTCTTGCTGTCTGTGTGTTCTTAAGTAACTCACTTAAACCTTTCTGAGTCTCATTTTCTTCATTTATAAAATAAAAGACGTAACATTTATGTC</dnaseq>|
 
sequence = <dnaseq>CTGAATGTGCTGTTTGCCTCGGACATCAAACATCTCACAGACTGCCTGGAAGAAGGTGGAGCAGACTGGGGTTAATGGTCAGCAGCAGCAGCATCCCCACCACTGGGGCTATCCCTTTTTAGGCCCTTACCATGGGCCAAACACTGAGCCGTGTGCTTCGTGTAACTTCTAAGCACGCTTACCTGATAGGGTGACAGCAAAGACTCGAAGAGGTGCCTGGGCTTGGCACATAGTAGCTATTGCTACTATTATGAATGTTGTTTTGTCTTTGTTTTTGTTTTGAGACAGGGCCTCACTCTGTTGCCCAGGTTGGAGTACAGCAGTGCCATCATAGCTCACTGAAGCCTCAACCTCCCTGGGTTTGAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGTGCGCCACCAAGCCCAGCCAATTGTTTGTATTTTCAGTAGAGACTGGTTTTGCCAAGTCGCCCAGGCTGGTTTCGAACTCTGGGGTTCAAGCAATCTGCCCACCTCAGCCTCCCAAAGTGCTGGCATTACAGGCGTGTGCCACTGCGCCCAGCCATTATGAATGTCAATATTGACATGATCTTGTATCCTTATGCCCACACTGGGAGAGGTCTGATTGTCCCCATGTTCCTGGTGTGGAACCACATGGAAGAGGCCTATGTTATCCCAACAGTGCAGAAGCACAGCCTGAGTCTCTTCTTTGGCTGAGCCAAGGGCGTGCTGGAGAGGCCTGACAGAAGAAGGAGCGGCCCTTGTGACCAGTGCCCTTTTGGTTCACAAGGAACTTCTCCTCTTGTTGAAGTGACTTGGCTGAGCTTGCTACTTCTGCTTTGAGAGTCAAATATCAGGATCAAGACTTTAATTATCCCCAATTTACAGATGATGAAACCATATTGGGCAGGAAAGAAAGTCACCCCAGGAGAGCAAGTTGGACCTGAGCACTGGCTGAGGACAAAGGGGAATGATAATTTGGGATGTAACTTGTTAAGGGGTCTCACAAGTGTTCTTGTGATCCAGGTGTCGAGAGGATACAGCAGAAAGGTTGCCAGGGAGATGAGGGTAGGGTACACCACAAGAGTGGGAGAAATTAAAGAGAACACGCAACAAAGCCTTGGGACACTGGGAGGGGGATGGACCACCCAGTTTTGTGCTATGGGAGAAGAGAGCAAGAAAAGGAATCTGTGTTAAATCCCGACAGCCTGCATGAGAAGCAAATGCCCTTCATTTTCTTCATCAGCGGCGAGACTGGCATCCCTGCAGCTTTGGGAGACCATGCTAGTGTAGATGCCAGCTCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGAGGAGAGTTCAGCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTAATTATTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACACCTGTGTTCGGTTTCCAGTTCTACCTCTTGCTGTCTGTGTGTTCTTAAGTAACTCACTTAAACCTTTCTGAGTCTCATTTTCTTCATTTATAAAATAAAAGACGTAACATTTATGTC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG021597]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG021597]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:15, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT053202

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1605 nt

Genomic location

chr17-:34791545..34793149

Exon number

1

Exons

34791545..34793149

Genome context

Sequence
000001 CTGAATGTGC TGTTTGCCTC GGACATCAAA CATCTCACAG ACTGCCTGGA AGAAGGTGGA GCAGACTGGG GTTAATGGTC 000080
000081 AGCAGCAGCA GCATCCCCAC CACTGGGGCT ATCCCTTTTT AGGCCCTTAC CATGGGCCAA ACACTGAGCC GTGTGCTTCG 000160
000161 TGTAACTTCT AAGCACGCTT ACCTGATAGG GTGACAGCAA AGACTCGAAG AGGTGCCTGG GCTTGGCACA TAGTAGCTAT 000240
000241 TGCTACTATT ATGAATGTTG TTTTGTCTTT GTTTTTGTTT TGAGACAGGG CCTCACTCTG TTGCCCAGGT TGGAGTACAG 000320
000321 CAGTGCCATC ATAGCTCACT GAAGCCTCAA CCTCCCTGGG TTTGAGCAAT CCTCCCACCT CAGCCTCCCA AGTAGCTGAG 000400
000401 ACTACAGGTG TGCGCCACCA AGCCCAGCCA ATTGTTTGTA TTTTCAGTAG AGACTGGTTT TGCCAAGTCG CCCAGGCTGG 000480
000481 TTTCGAACTC TGGGGTTCAA GCAATCTGCC CACCTCAGCC TCCCAAAGTG CTGGCATTAC AGGCGTGTGC CACTGCGCCC 000560
000561 AGCCATTATG AATGTCAATA TTGACATGAT CTTGTATCCT TATGCCCACA CTGGGAGAGG TCTGATTGTC CCCATGTTCC 000640
000641 TGGTGTGGAA CCACATGGAA GAGGCCTATG TTATCCCAAC AGTGCAGAAG CACAGCCTGA GTCTCTTCTT TGGCTGAGCC 000720
000721 AAGGGCGTGC TGGAGAGGCC TGACAGAAGA AGGAGCGGCC CTTGTGACCA GTGCCCTTTT GGTTCACAAG GAACTTCTCC 000800
000801 TCTTGTTGAA GTGACTTGGC TGAGCTTGCT ACTTCTGCTT TGAGAGTCAA ATATCAGGAT CAAGACTTTA ATTATCCCCA 000880
000881 ATTTACAGAT GATGAAACCA TATTGGGCAG GAAAGAAAGT CACCCCAGGA GAGCAAGTTG GACCTGAGCA CTGGCTGAGG 000960
000961 ACAAAGGGGA ATGATAATTT GGGATGTAAC TTGTTAAGGG GTCTCACAAG TGTTCTTGTG ATCCAGGTGT CGAGAGGATA 001040
001041 CAGCAGAAAG GTTGCCAGGG AGATGAGGGT AGGGTACACC ACAAGAGTGG GAGAAATTAA AGAGAACACG CAACAAAGCC 001120
001121 TTGGGACACT GGGAGGGGGA TGGACCACCC AGTTTTGTGC TATGGGAGAA GAGAGCAAGA AAAGGAATCT GTGTTAAATC 001200
001201 CCGACAGCCT GCATGAGAAG CAAATGCCCT TCATTTTCTT CATCAGCGGC GAGACTGGCA TCCCTGCAGC TTTGGGAGAC 001280
001281 CATGCTAGTG TAGATGCCAG CTCACGCCAG CGGGCCTGAC TGGGAGACCT TGGGCTGGGG TTCTGGTCTG GGGCTCCTAG 001360
001361 GCCTGATGGG AGGAGAGTTC AGCCCCAGGT TTCCTGTACT TCAGCTCATA TCCACACAAT GGTAATTATT GAAATGAGAG 001440
001441 ACTCAAAAGA AGATGGAACG TGAACTTTTT TGTTGTCCCA TGTGGACACC TGTGTTCGGT TTCCAGTTCT ACCTCTTGCT 001520
001521 GTCTGTGTGT TCTTAAGTAA CTCACTTAAA CCTTTCTGAG TCTCATTTTC TTCATTTATA AAATAAAAGA CGTAACATTT 001600
001601 ATGTC
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Predicted Small Protein

Name NONHSAT053202_smProtein_1139:1318
Length 60
Molecular weight 6570.2793
Aromaticity 0.0677966101695
Instability index 52.7525423729
Isoelectric point 5.41510009766
Runs 7
Runs residual 0.0258124708443
Runs probability 0.0331592096299
Amino acid sequence MDHPVLCYGRREQEKESVLNPDSLHEKQMPFIFFISGETGIPAALGDHASVDASSRQRA
Secondary structure LLLLEELLLLLLHHHHLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -