Difference between revisions of "NONHSAT055974"
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sequence = <dnaseq>tcttcccccaccagaggggtgcatttgttacaattgatggccctttatagacacaccatcatctcccaaagtccatagtttacatcagggttcacgcttgatgttgtacattctatgggtttggacaaatgtttcatgatgtgtatttaccattatataccatatggagtattttcattgccccaGTCAATTTCATTCTTTATAAAAGACTTGTCTTCAGAGAACAGATTGTGCTGCAGATTCATTGAAGTAGCATGTGGAGGGGGAAGAGCTCTTTAAGTCTGAGTTGAATCTAGTGATTCTCAAGAAAACAGACCAGACCCTTGAAGATTTTCCTGTCTTTCTCTCTTAGGGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGTCTCTTGGCTGAAAAATTGGAGGCTTTGATCACTCAGACTCGAGCCAAACAGGCAGCTACCATGAGTGAAGTGGAGTGGAGAGGGAGAACGGTTCCAGTGAAGATTGACAAAGTGCGCATTTTCTTATTAGGACTGGCTGATAACGAAGCAGCTATTGTCCAGGTGAGG</dnaseq>| | sequence = <dnaseq>tcttcccccaccagaggggtgcatttgttacaattgatggccctttatagacacaccatcatctcccaaagtccatagtttacatcagggttcacgcttgatgttgtacattctatgggtttggacaaatgtttcatgatgtgtatttaccattatataccatatggagtattttcattgccccaGTCAATTTCATTCTTTATAAAAGACTTGTCTTCAGAGAACAGATTGTGCTGCAGATTCATTGAAGTAGCATGTGGAGGGGGAAGAGCTCTTTAAGTCTGAGTTGAATCTAGTGATTCTCAAGAAAACAGACCAGACCCTTGAAGATTTTCCTGTCTTTCTCTCTTAGGGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGTCTCTTGGCTGAAAAATTGGAGGCTTTGATCACTCAGACTCGAGCCAAACAGGCAGCTACCATGAGTGAAGTGGAGTGGAGAGGGAGAACGGTTCCAGTGAAGATTGACAAAGTGCGCATTTTCTTATTAGGACTGGCTGATAACGAAGCAGCTATTGTCCAGGTGAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG022799]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG022799]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:27, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT055974 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
582 nt |
| Genomic location |
chr17-:74053478..74056823 |
| Exon number |
2 |
| Exons |
74053478..74053624,74056389..74056823 |
| Genome context |
|
| Sequence |
000001 tcttccccca ccagaggggt gcatttgtta caattgatgg ccctttatag acacaccatc atctcccaaa gtccatagtt 000080
000081 tacatcaggg ttcacgcttg atgttgtaca ttctatgggt ttggacaaat gtttcatgat gtgtatttac cattatatac 000160 000161 catatggagt attttcattg ccccaGTCAA TTTCATTCTT TATAAAAGAC TTGTCTTCAG AGAACAGATT GTGCTGCAGA 000240 000241 TTCATTGAAG TAGCATGTGG AGGGGGAAGA GCTCTTTAAG TCTGAGTTGA ATCTAGTGAT TCTCAAGAAA ACAGACCAGA 000320 000321 CCCTTGAAGA TTTTCCTGTC TTTCTCTCTT AGGGGACCAG TCAGCCATCA ATGAACTCAT GCAGATGAGA TTGAGGTCTG 000400 000401 GGGGCACTGA GGGTCTCTTG GCTGAAAAAT TGGAGGCTTT GATCACTCAG ACTCGAGCCA AACAGGCAGC TACCATGAGT 000480 000481 GAAGTGGAGT GGAGAGGGAG AACGGTTCCA GTGAAGATTG ACAAAGTGCG CATTTTCTTA TTAGGACTGG CTGATAACGA 000560 000561 AGCAGCTATT GTCCAGGTGA GG |
Predicted Small Protein
| Name | NONHSAT055974_smProtein_128:247 |
| Length | 40 |
| Molecular weight | 4837.7678 |
| Aromaticity | 0.205128205128 |
| Instability index | 44.1769230769 |
| Isoelectric point | 8.22967529297 |
| Runs | 8 |
| Runs residual | 0.0363876319759 |
| Runs probability | 0.0277336159689 |
| Amino acid sequence | MFHDVYLPLYTIWSIFIAPVNFILYKRLVFREQIVLQIH |
| Secondary structure | LLLLEELLHHHHHHHEELLLLHHHHHHHHHHHHHHHHLL |
| PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
| PiMo | ooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiii |
