Difference between revisions of "NONHSAT056436"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGCCTCTTGCTCAGCCACACTGCCTGCCTGGTGCAGCCCATGTGACGGGTCGAGCTCCGGGCCCTGCTGTCCCTGGCCGGGCTATCCCAGTGGCTTCAGGCACCTTCTCCAGACCTACCCAGAAAGATGCCCGGATGGATCCTGCAGCTCCGTGGCTTTTCTGGGAAGCAGCGGCCCCTGCTCTCAAGAGACCCTGGCTCCTGATGGTGGCCCCAAGGTTGCCAGCTGGTGCTAGGGACTCAGGACAGTTTCCCAGAAAAGGCCAAGCGGGCAGCCCCTCCAGGGGCCGGGTGAGGAAGCTGGGGGGTGCGGAGGCCACACTGGGTCCCTGAACCCCCTGCTTGGTTACAGTGCAGCTCCTCAAGTCCACAGACGTGGGCCGGCACAGCCTCCTGTACCTGAAGGAAATCGGCCGTGGCTGGTTCGGGAAGGTGGGGACCACGTCCTGGTGGCTGTTGGCAGCAGATTCAGGTGCCTCTGCCCCACGCGGTGTCCTGGAGAAGCCCGTGGGATGAGAGGCCCTGGATGGTAGATCGGCCATGCTCCGCCCCAGAGGCAGAATTCGTCTGGGCTTTTAGGCTTGCTGCTAGCCCCTGGGGGCGCCTGGAGCCACAGTGGGTGTCTGTACACACATACACACTCAAAAGGGGCCAGTGCCCCTGGGCACGGCGGCCCCCACCCTCTGCCCTGCCTGCCTGGCCTCGGAGGACCCGCATGCCCCATCCGGCAGCTCCTCCGGTGTGCTCACAGGACA</dnaseq>| | sequence = <dnaseq>AGCCTCTTGCTCAGCCACACTGCCTGCCTGGTGCAGCCCATGTGACGGGTCGAGCTCCGGGCCCTGCTGTCCCTGGCCGGGCTATCCCAGTGGCTTCAGGCACCTTCTCCAGACCTACCCAGAAAGATGCCCGGATGGATCCTGCAGCTCCGTGGCTTTTCTGGGAAGCAGCGGCCCCTGCTCTCAAGAGACCCTGGCTCCTGATGGTGGCCCCAAGGTTGCCAGCTGGTGCTAGGGACTCAGGACAGTTTCCCAGAAAAGGCCAAGCGGGCAGCCCCTCCAGGGGCCGGGTGAGGAAGCTGGGGGGTGCGGAGGCCACACTGGGTCCCTGAACCCCCTGCTTGGTTACAGTGCAGCTCCTCAAGTCCACAGACGTGGGCCGGCACAGCCTCCTGTACCTGAAGGAAATCGGCCGTGGCTGGTTCGGGAAGGTGGGGACCACGTCCTGGTGGCTGTTGGCAGCAGATTCAGGTGCCTCTGCCCCACGCGGTGTCCTGGAGAAGCCCGTGGGATGAGAGGCCCTGGATGGTAGATCGGCCATGCTCCGCCCCAGAGGCAGAATTCGTCTGGGCTTTTAGGCTTGCTGCTAGCCCCTGGGGGCGCCTGGAGCCACAGTGGGTGTCTGTACACACATACACACTCAAAAGGGGCCAGTGCCCCTGGGCACGGCGGCCCCCACCCTCTGCCCTGCCTGCCTGGCCTCGGAGGACCCGCATGCCCCATCCGGCAGCTCCTCCGGTGTGCTCACAGGACA</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG022977]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:29, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT056436 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
754 nt |
| Genomic location |
chr17-:79091800..79102700 |
| Exon number |
2 |
| Exons |
79091800..79092122,79102270..79102700 |
| Genome context |
|
| Sequence |
000001 AGCCTCTTGC TCAGCCACAC TGCCTGCCTG GTGCAGCCCA TGTGACGGGT CGAGCTCCGG GCCCTGCTGT CCCTGGCCGG 000080
000081 GCTATCCCAG TGGCTTCAGG CACCTTCTCC AGACCTACCC AGAAAGATGC CCGGATGGAT CCTGCAGCTC CGTGGCTTTT 000160 000161 CTGGGAAGCA GCGGCCCCTG CTCTCAAGAG ACCCTGGCTC CTGATGGTGG CCCCAAGGTT GCCAGCTGGT GCTAGGGACT 000240 000241 CAGGACAGTT TCCCAGAAAA GGCCAAGCGG GCAGCCCCTC CAGGGGCCGG GTGAGGAAGC TGGGGGGTGC GGAGGCCACA 000320 000321 CTGGGTCCCT GAACCCCCTG CTTGGTTACA GTGCAGCTCC TCAAGTCCAC AGACGTGGGC CGGCACAGCC TCCTGTACCT 000400 000401 GAAGGAAATC GGCCGTGGCT GGTTCGGGAA GGTGGGGACC ACGTCCTGGT GGCTGTTGGC AGCAGATTCA GGTGCCTCTG 000480 000481 CCCCACGCGG TGTCCTGGAG AAGCCCGTGG GATGAGAGGC CCTGGATGGT AGATCGGCCA TGCTCCGCCC CAGAGGCAGA 000560 000561 ATTCGTCTGG GCTTTTAGGC TTGCTGCTAG CCCCTGGGGG CGCCTGGAGC CACAGTGGGT GTCTGTACAC ACATACACAC 000640 000641 TCAAAAGGGG CCAGTGCCCC TGGGCACGGC GGCCCCCACC CTCTGCCCTG CCTGCCTGGC CTCGGAGGAC CCGCATGCCC 000720 000721 CATCCGGCAG CTCCTCCGGT GTGCTCACAG GACA |
Predicted Small Protein
| Name | NONHSAT056436_smProtein_134:331 |
| Length | 66 |
| Molecular weight | 6891.9456 |
| Aromaticity | 0.0769230769231 |
| Instability index | 50.6707692308 |
| Isoelectric point | 11.6231079102 |
| Runs | 9 |
| Runs residual | 0.0118269230769 |
| Runs probability | 0.0332980038863 |
| Amino acid sequence | MDPAAPWLFWEAAAPALKRPWLLMVAPRLPAGARDSGQFPRKGQAGSPSRGRVRKLGGAE ATLGP |
| Secondary structure | LLLLLHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLEE EELLL |
| PRMN | - |
| PiMo | - |
