Difference between revisions of "NONHSAT057025"
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sequence = <dnaseq>GAAGACAAGCAGATGAGGAGACAAAACCTACTGATGTGGGTACCCAAGCAGGAACCCCCCTCTTGCACCGGCGACTCACGTGGGAAGAAGAATTCACTGAGCTGAAATGGAGTGAGAGCTAAGATGCTCTCAGAATATTCTTAAAATGACTGTGCTGCAAAGAAGCCCGGGTGAATAGAAGAAAATAGAAGGAATGGTGGATACAAGTGAAGGTTAAAATGAGACCCCATTTATCGCACCAGCTGTTGGTGATTTCAGCGCACCTTTCCAAGCCTCTTGAGAGTTCTGCTCTAACCACACTGCCCCCTAGTGTTCTCTCGCTTTGGTGCAACgtccgtcttgtacacttccttccacagacctgtaatcagctatttcttcagggagcctgtgattccttttagtggaaaatggtatgtagagaacattatctgtgtgtgaagggttgagcacgttccatcttttc</dnaseq>| | sequence = <dnaseq>GAAGACAAGCAGATGAGGAGACAAAACCTACTGATGTGGGTACCCAAGCAGGAACCCCCCTCTTGCACCGGCGACTCACGTGGGAAGAAGAATTCACTGAGCTGAAATGGAGTGAGAGCTAAGATGCTCTCAGAATATTCTTAAAATGACTGTGCTGCAAAGAAGCCCGGGTGAATAGAAGAAAATAGAAGGAATGGTGGATACAAGTGAAGGTTAAAATGAGACCCCATTTATCGCACCAGCTGTTGGTGATTTCAGCGCACCTTTCCAAGCCTCTTGAGAGTTCTGCTCTAACCACACTGCCCCCTAGTGTTCTCTCGCTTTGGTGCAACgtccgtcttgtacacttccttccacagacctgtaatcagctatttcttcagggagcctgtgattccttttagtggaaaatggtatgtagagaacattatctgtgtgtgaagggttgagcacgttccatcttttc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG023243]][[Category:Transcripts]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG023243]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:32, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT057025 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
466 nt |
| Genomic location |
chr18+:3993113..3998589 |
| Exon number |
4 |
| Exons |
3993113..3993202,3995217..3995349,3995608..3995716,3998456..3998589 |
| Genome context |
|
| Sequence |
000001 GAAGACAAGC AGATGAGGAG ACAAAACCTA CTGATGTGGG TACCCAAGCA GGAACCCCCC TCTTGCACCG GCGACTCACG 000080
000081 TGGGAAGAAG AATTCACTGA GCTGAAATGG AGTGAGAGCT AAGATGCTCT CAGAATATTC TTAAAATGAC TGTGCTGCAA 000160 000161 AGAAGCCCGG GTGAATAGAA GAAAATAGAA GGAATGGTGG ATACAAGTGA AGGTTAAAAT GAGACCCCAT TTATCGCACC 000240 000241 AGCTGTTGGT GATTTCAGCG CACCTTTCCA AGCCTCTTGA GAGTTCTGCT CTAACCACAC TGCCCCCTAG TGTTCTCTCG 000320 000321 CTTTGGTGCA ACgtccgtct tgtacacttc cttccacaga cctgtaatca gctatttctt cagggagcct gtgattcctt 000400 000401 ttagtggaaa atggtatgta gagaacatta tctgtgtgtg aagggttgag cacgttccat cttttc |
Predicted Small Protein
| Name | NONHSAT057025_smProtein_218:403 |
| Length | 62 |
| Molecular weight | 6796.9171 |
| Aromaticity | 0.0655737704918 |
| Instability index | 49.6475409836 |
| Isoelectric point | 7.81561279297 |
| Runs | 9 |
| Runs residual | 0.00527605049934 |
| Runs probability | 0.0398535790692 |
| Amino acid sequence | MRPHLSHQLLVISAHLSKPLESSALTTLPPSVLSLWCNVRLVHFLPQTCNQLFLQGACDS F |
| Secondary structure | LLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLEELHHHHHHLHHHHHHHHHHHHHLL L |
| PRMN | - |
| PiMo | - |
