Difference between revisions of "NONHSAT061176"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGCAAGTGAGGAATATGAAATAACCTTATGGCTGAATCAGGGTGAAGGGGAAGCTTGTAAGCATGGAAGACGCTCTACTCAAACTAAaaagttcaagttctgatccagcagatgaagagggaggcctgagaggctgctgttctaactcgctcccaggttcaagtgattcttctgcctcagcctcccaagtagctggaattacagCAGCCTTGGCAACTATTCTTTTATTGAACATCAGTAACAGAAAGATGCTTGATTTAGGAGGAAGCTTTCCCTCCCTCCCTCCCCCATTGCACCCCGGAACTCAGCAAAGGTGAGCCAGCCACAGAGCATAACACTGTGGCTGGGACACATGTCCATGTGTGTTTCACATACGTGGGCATCTGTGCCACAAGGGTCATGTGGCACCACAGTTCATCAGCTGTGTTTCCCCTTCCTGCCCTGCTGCAGCGCCACAGGTTGGAGGAAAAGCCTGCCTGTGAGCAGGGTCCCGGCAGGGCCCACCCACCCAACAGTGGAGATCGGGCCTCAGAGCTGGGCAGTCATGGGAGTTCAGGGCCTGGCTCGCCTCGGCAGCCTGGTCTTAAAGAGGGACTTGCCCGAGGCCTCGATGTAAGTGACAGTCATCTCTTTGGAGCTGATCTCCACATAGGCAAAGCCACCCAGTGAGTCTTCAGTCCCATAGTGGAAGCGCAGATAGCCGTTGGGGACCTTGCGCTGGTGCCGCTTTGAGGGGTCCATGAAATTCCCAGCCCCACTCAGCACGTAGCCCACGCCATTCTCATCTTGCAGGTACTGAGGATGGAGGACAAGGGGTCAGTGGAGACCCAGCTTTGAGCAgagccctgcctaaggtccagggctcgatctggccctaaccacagagtcaccttgaggtatgtaacccctcctggcttcaatttcctgacttttaggagtgtattaatcctatttcataggTAGAGCACTTAGTAAGAAATTGGTggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgagggggtggattgcttgagcccaggaatttgagaccagcctgggcaacatagtgagaccttgcctctac</dnaseq>| | sequence = <dnaseq>GGCAAGTGAGGAATATGAAATAACCTTATGGCTGAATCAGGGTGAAGGGGAAGCTTGTAAGCATGGAAGACGCTCTACTCAAACTAAaaagttcaagttctgatccagcagatgaagagggaggcctgagaggctgctgttctaactcgctcccaggttcaagtgattcttctgcctcagcctcccaagtagctggaattacagCAGCCTTGGCAACTATTCTTTTATTGAACATCAGTAACAGAAAGATGCTTGATTTAGGAGGAAGCTTTCCCTCCCTCCCTCCCCCATTGCACCCCGGAACTCAGCAAAGGTGAGCCAGCCACAGAGCATAACACTGTGGCTGGGACACATGTCCATGTGTGTTTCACATACGTGGGCATCTGTGCCACAAGGGTCATGTGGCACCACAGTTCATCAGCTGTGTTTCCCCTTCCTGCCCTGCTGCAGCGCCACAGGTTGGAGGAAAAGCCTGCCTGTGAGCAGGGTCCCGGCAGGGCCCACCCACCCAACAGTGGAGATCGGGCCTCAGAGCTGGGCAGTCATGGGAGTTCAGGGCCTGGCTCGCCTCGGCAGCCTGGTCTTAAAGAGGGACTTGCCCGAGGCCTCGATGTAAGTGACAGTCATCTCTTTGGAGCTGATCTCCACATAGGCAAAGCCACCCAGTGAGTCTTCAGTCCCATAGTGGAAGCGCAGATAGCCGTTGGGGACCTTGCGCTGGTGCCGCTTTGAGGGGTCCATGAAATTCCCAGCCCCACTCAGCACGTAGCCCACGCCATTCTCATCTTGCAGGTACTGAGGATGGAGGACAAGGGGTCAGTGGAGACCCAGCTTTGAGCAgagccctgcctaaggtccagggctcgatctggccctaaccacagagtcaccttgaggtatgtaacccctcctggcttcaatttcctgacttttaggagtgtattaatcctatttcataggTAGAGCACTTAGTAAGAAATTGGTggccaggtgtggtggctcatgcctgtaatcccagcactttgggaggctgagggggtggattgcttgagcccaggaatttgagaccagcctgggcaacatagtgagaccttgcctctac</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG024851]][[Category:Transcripts]] |
Latest revision as of 22:46, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT061176 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1102 nt |
| Genomic location |
chr19+:11670276..11686374 |
| Exon number |
3 |
| Exons |
11670276..11670431,11675260..11675307,11685477..11686374 |
| Genome context |
|
| Sequence |
000001 GGCAAGTGAG GAATATGAAA TAACCTTATG GCTGAATCAG GGTGAAGGGG AAGCTTGTAA GCATGGAAGA CGCTCTACTC 000080
000081 AAACTAAaaa gttcaagttc tgatccagca gatgaagagg gaggcctgag aggctgctgt tctaactcgc tcccaggttc 000160 000161 aagtgattct tctgcctcag cctcccaagt agctggaatt acagCAGCCT TGGCAACTAT TCTTTTATTG AACATCAGTA 000240 000241 ACAGAAAGAT GCTTGATTTA GGAGGAAGCT TTCCCTCCCT CCCTCCCCCA TTGCACCCCG GAACTCAGCA AAGGTGAGCC 000320 000321 AGCCACAGAG CATAACACTG TGGCTGGGAC ACATGTCCAT GTGTGTTTCA CATACGTGGG CATCTGTGCC ACAAGGGTCA 000400 000401 TGTGGCACCA CAGTTCATCA GCTGTGTTTC CCCTTCCTGC CCTGCTGCAG CGCCACAGGT TGGAGGAAAA GCCTGCCTGT 000480 000481 GAGCAGGGTC CCGGCAGGGC CCACCCACCC AACAGTGGAG ATCGGGCCTC AGAGCTGGGC AGTCATGGGA GTTCAGGGCC 000560 000561 TGGCTCGCCT CGGCAGCCTG GTCTTAAAGA GGGACTTGCC CGAGGCCTCG ATGTAAGTGA CAGTCATCTC TTTGGAGCTG 000640 000641 ATCTCCACAT AGGCAAAGCC ACCCAGTGAG TCTTCAGTCC CATAGTGGAA GCGCAGATAG CCGTTGGGGA CCTTGCGCTG 000720 000721 GTGCCGCTTT GAGGGGTCCA TGAAATTCCC AGCCCCACTC AGCACGTAGC CCACGCCATT CTCATCTTGC AGGTACTGAG 000800 000801 GATGGAGGAC AAGGGGTCAG TGGAGACCCA GCTTTGAGCA gagccctgcc taaggtccag ggctcgatct ggccctaacc 000880 000881 acagagtcac cttgaggtat gtaacccctc ctggcttcaa tttcctgact tttaggagtg tattaatcct atttcatagg 000960 000961 TAGAGCACTT AGTAAGAAAT TGGTggccag gtgtggtggc tcatgcctgt aatcccagca ctttgggagg ctgagggggt 001040 001041 ggattgcttg agcccaggaa tttgagacca gcctgggcaa catagtgaga ccttgcctct ac |
Predicted Small Protein
| Name | NONHSAT061176_smProtein_62:316 |
| Length | 85 |
| Molecular weight | 8537.5184 |
| Aromaticity | 0.0119047619048 |
| Instability index | 57.8702380952 |
| Isoelectric point | 5.03790283203 |
| Runs | 11 |
| Runs residual | 0.0030330603579 |
| Runs probability | 0.0299095887331 |
| Amino acid sequence | MEDALLKLKSSSSDPADEEGGLRGCCSNSLPGSSDSSASASQVAGITAALATILLLNISN RKMLDLGGSFPSLPPPLHPGTQQR |
| Secondary structure | LHHHHHHHHLLLLLLHHHLLLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLL HHHHHLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
