Difference between revisions of "NONHSAT063981"

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sequence = <dnaseq>AAAAAAAAAAAAATCCAAAGGTCAAACTCAGTTTGCAGGAAGGAGCATAGGAGAATAAAGGATGGAACAAAGAAGAAAAAGAACAGCAAGTTACTCTGAGTATTGTGGAAACAAACTGAAATTAGAGTGAGAGAGAGAGAGAAAAAAAAAGAAGGTCCGAgcaatctcagatatatgagaggccaagatgggaagatcacttgggtaagactgggaagattgagtctgcagtgagtcacagtcgcatcattCTGCTGGATTTGAATGGTACTGCTTCTGGCCCAAGTTGTCTGGGCAACCTTAGACATGggtgtccatcgcgcttccttcactgccttgatcatgtcggggtcaccaccTGCGGgggtttgtcctgcagaccctgactcaacgacggatgaataatgtacactgacacagatcttatgcttgtcagtcctgctgagcatccaggccacttacagactccaagaagagtcctgtcagccacggctctgacttgttggccctcccggcatttatttagcacacatttaatgacagaagtctcaggctggaaacactctttttgtagaacatacaaatggacatttctaagcacattgaggcctataatgaaaaatcaaatatcccacaatgaaaactagaaggaagctatctgtgataatgctttgtggtgtatggattcatctcactgactgaaacctgagttttgattcaccaggttggaaactctttctgcagaatctgcaaagaaatatttctgagcccattgaggcctacagtggaaaactgaatattctgtgataaaactagaaacaccctatctgtgaaaatgctttgtgatgtgtggatttttctcatcgaatggaacctctgttttgactcacaagggtgaaacactattttagtagaatctaggaagaaacatatctgagcccatttatgcctacagtgagaaactgaataccctgcaataaaaagtagacagaagctatttgtaaaaatgctttgtgatgtgtggattcagtgttaaacttttattttgattccacagttttgacaccctatttgtagaatatatgaatgaacatttctcagc</dnaseq>|
 
sequence = <dnaseq>AAAAAAAAAAAAATCCAAAGGTCAAACTCAGTTTGCAGGAAGGAGCATAGGAGAATAAAGGATGGAACAAAGAAGAAAAAGAACAGCAAGTTACTCTGAGTATTGTGGAAACAAACTGAAATTAGAGTGAGAGAGAGAGAGAAAAAAAAAGAAGGTCCGAgcaatctcagatatatgagaggccaagatgggaagatcacttgggtaagactgggaagattgagtctgcagtgagtcacagtcgcatcattCTGCTGGATTTGAATGGTACTGCTTCTGGCCCAAGTTGTCTGGGCAACCTTAGACATGggtgtccatcgcgcttccttcactgccttgatcatgtcggggtcaccaccTGCGGgggtttgtcctgcagaccctgactcaacgacggatgaataatgtacactgacacagatcttatgcttgtcagtcctgctgagcatccaggccacttacagactccaagaagagtcctgtcagccacggctctgacttgttggccctcccggcatttatttagcacacatttaatgacagaagtctcaggctggaaacactctttttgtagaacatacaaatggacatttctaagcacattgaggcctataatgaaaaatcaaatatcccacaatgaaaactagaaggaagctatctgtgataatgctttgtggtgtatggattcatctcactgactgaaacctgagttttgattcaccaggttggaaactctttctgcagaatctgcaaagaaatatttctgagcccattgaggcctacagtggaaaactgaatattctgtgataaaactagaaacaccctatctgtgaaaatgctttgtgatgtgtggatttttctcatcgaatggaacctctgttttgactcacaagggtgaaacactattttagtagaatctaggaagaaacatatctgagcccatttatgcctacagtgagaaactgaataccctgcaataaaaagtagacagaagctatttgtaaaaatgctttgtgatgtgtggattcagtgttaaacttttattttgattccacagttttgacaccctatttgtagaatatatgaatgaacatttctcagc</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG025376]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:52, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT063981

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1102 nt

Genomic location

chr19-:28221238..28262880

Exon number

4

Exons

28221238..28221615,28223704..28223875,28237006..28237248,28262572..28262880

Genome context

Sequence
000001 AAAAAAAAAA AAATCCAAAG GTCAAACTCA GTTTGCAGGA AGGAGCATAG GAGAATAAAG GATGGAACAA AGAAGAAAAA 000080
000081 GAACAGCAAG TTACTCTGAG TATTGTGGAA ACAAACTGAA ATTAGAGTGA GAGAGAGAGA GAAAAAAAAA GAAGGTCCGA 000160
000161 gcaatctcag atatatgaga ggccaagatg ggaagatcac ttgggtaaga ctgggaagat tgagtctgca gtgagtcaca 000240
000241 gtcgcatcat tCTGCTGGAT TTGAATGGTA CTGCTTCTGG CCCAAGTTGT CTGGGCAACC TTAGACATGg gtgtccatcg 000320
000321 cgcttccttc actgccttga tcatgtcggg gtcaccaccT GCGGgggttt gtcctgcaga ccctgactca acgacggatg 000400
000401 aataatgtac actgacacag atcttatgct tgtcagtcct gctgagcatc caggccactt acagactcca agaagagtcc 000480
000481 tgtcagccac ggctctgact tgttggccct cccggcattt atttagcaca catttaatga cagaagtctc aggctggaaa 000560
000561 cactcttttt gtagaacata caaatggaca tttctaagca cattgaggcc tataatgaaa aatcaaatat cccacaatga 000640
000641 aaactagaag gaagctatct gtgataatgc tttgtggtgt atggattcat ctcactgact gaaacctgag ttttgattca 000720
000721 ccaggttgga aactctttct gcagaatctg caaagaaata tttctgagcc cattgaggcc tacagtggaa aactgaatat 000800
000801 tctgtgataa aactagaaac accctatctg tgaaaatgct ttgtgatgtg tggatttttc tcatcgaatg gaacctctgt 000880
000881 tttgactcac aagggtgaaa cactatttta gtagaatcta ggaagaaaca tatctgagcc catttatgcc tacagtgaga 000960
000961 aactgaatac cctgcaataa aaagtagaca gaagctattt gtaaaaatgc tttgtgatgt gtggattcag tgttaaactt 001040
001041 ttattttgat tccacagttt tgacacccta tttgtagaat atatgaatga acatttctca gc
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Predicted Small Protein

Name NONHSAT063981_smProtein_404:646
Length 81
Molecular weight 9342.6431
Aromaticity 0.1
Instability index 47.05375
Isoelectric point 9.23638916016
Runs 15
Runs residual 0.0486842105263
Runs probability 0.0489430607079
Amino acid sequence MYTDTDLMLVSPAEHPGHLQTPRRVLSATALTCWPSRHLFSTHLMTEVSGWKHSFCRTYK
WTFLSTLRPIMKNQISHNEN
Secondary structure LLLLLLEEEELLLLLLLLLLLHHHHHLLLEEELLLLLLEEELEEEEEELLLLLLEEEEEL
LHHHHHHHHHHHHHHLLLLL
PRMN -
PiMo -