Difference between revisions of "NONHSAT063981"
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>AAAAAAAAAAAAATCCAAAGGTCAAACTCAGTTTGCAGGAAGGAGCATAGGAGAATAAAGGATGGAACAAAGAAGAAAAAGAACAGCAAGTTACTCTGAGTATTGTGGAAACAAACTGAAATTAGAGTGAGAGAGAGAGAGAAAAAAAAAGAAGGTCCGAgcaatctcagatatatgagaggccaagatgggaagatcacttgggtaagactgggaagattgagtctgcagtgagtcacagtcgcatcattCTGCTGGATTTGAATGGTACTGCTTCTGGCCCAAGTTGTCTGGGCAACCTTAGACATGggtgtccatcgcgcttccttcactgccttgatcatgtcggggtcaccaccTGCGGgggtttgtcctgcagaccctgactcaacgacggatgaataatgtacactgacacagatcttatgcttgtcagtcctgctgagcatccaggccacttacagactccaagaagagtcctgtcagccacggctctgacttgttggccctcccggcatttatttagcacacatttaatgacagaagtctcaggctggaaacactctttttgtagaacatacaaatggacatttctaagcacattgaggcctataatgaaaaatcaaatatcccacaatgaaaactagaaggaagctatctgtgataatgctttgtggtgtatggattcatctcactgactgaaacctgagttttgattcaccaggttggaaactctttctgcagaatctgcaaagaaatatttctgagcccattgaggcctacagtggaaaactgaatattctgtgataaaactagaaacaccctatctgtgaaaatgctttgtgatgtgtggatttttctcatcgaatggaacctctgttttgactcacaagggtgaaacactattttagtagaatctaggaagaaacatatctgagcccatttatgcctacagtgagaaactgaataccctgcaataaaaagtagacagaagctatttgtaaaaatgctttgtgatgtgtggattcagtgttaaacttttattttgattccacagttttgacaccctatttgtagaatatatgaatgaacatttctcagc</dnaseq>| | sequence = <dnaseq>AAAAAAAAAAAAATCCAAAGGTCAAACTCAGTTTGCAGGAAGGAGCATAGGAGAATAAAGGATGGAACAAAGAAGAAAAAGAACAGCAAGTTACTCTGAGTATTGTGGAAACAAACTGAAATTAGAGTGAGAGAGAGAGAGAAAAAAAAAGAAGGTCCGAgcaatctcagatatatgagaggccaagatgggaagatcacttgggtaagactgggaagattgagtctgcagtgagtcacagtcgcatcattCTGCTGGATTTGAATGGTACTGCTTCTGGCCCAAGTTGTCTGGGCAACCTTAGACATGggtgtccatcgcgcttccttcactgccttgatcatgtcggggtcaccaccTGCGGgggtttgtcctgcagaccctgactcaacgacggatgaataatgtacactgacacagatcttatgcttgtcagtcctgctgagcatccaggccacttacagactccaagaagagtcctgtcagccacggctctgacttgttggccctcccggcatttatttagcacacatttaatgacagaagtctcaggctggaaacactctttttgtagaacatacaaatggacatttctaagcacattgaggcctataatgaaaaatcaaatatcccacaatgaaaactagaaggaagctatctgtgataatgctttgtggtgtatggattcatctcactgactgaaacctgagttttgattcaccaggttggaaactctttctgcagaatctgcaaagaaatatttctgagcccattgaggcctacagtggaaaactgaatattctgtgataaaactagaaacaccctatctgtgaaaatgctttgtgatgtgtggatttttctcatcgaatggaacctctgttttgactcacaagggtgaaacactattttagtagaatctaggaagaaacatatctgagcccatttatgcctacagtgagaaactgaataccctgcaataaaaagtagacagaagctatttgtaaaaatgctttgtgatgtgtggattcagtgttaaacttttattttgattccacagttttgacaccctatttgtagaatatatgaatgaacatttctcagc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG025376]] | + | [[Category:Intergenic]][[Category:NONHSAG025376]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:52, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT063981 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1102 nt |
| Genomic location |
chr19-:28221238..28262880 |
| Exon number |
4 |
| Exons |
28221238..28221615,28223704..28223875,28237006..28237248,28262572..28262880 |
| Genome context |
|
| Sequence |
000001 AAAAAAAAAA AAATCCAAAG GTCAAACTCA GTTTGCAGGA AGGAGCATAG GAGAATAAAG GATGGAACAA AGAAGAAAAA 000080
000081 GAACAGCAAG TTACTCTGAG TATTGTGGAA ACAAACTGAA ATTAGAGTGA GAGAGAGAGA GAAAAAAAAA GAAGGTCCGA 000160 000161 gcaatctcag atatatgaga ggccaagatg ggaagatcac ttgggtaaga ctgggaagat tgagtctgca gtgagtcaca 000240 000241 gtcgcatcat tCTGCTGGAT TTGAATGGTA CTGCTTCTGG CCCAAGTTGT CTGGGCAACC TTAGACATGg gtgtccatcg 000320 000321 cgcttccttc actgccttga tcatgtcggg gtcaccaccT GCGGgggttt gtcctgcaga ccctgactca acgacggatg 000400 000401 aataatgtac actgacacag atcttatgct tgtcagtcct gctgagcatc caggccactt acagactcca agaagagtcc 000480 000481 tgtcagccac ggctctgact tgttggccct cccggcattt atttagcaca catttaatga cagaagtctc aggctggaaa 000560 000561 cactcttttt gtagaacata caaatggaca tttctaagca cattgaggcc tataatgaaa aatcaaatat cccacaatga 000640 000641 aaactagaag gaagctatct gtgataatgc tttgtggtgt atggattcat ctcactgact gaaacctgag ttttgattca 000720 000721 ccaggttgga aactctttct gcagaatctg caaagaaata tttctgagcc cattgaggcc tacagtggaa aactgaatat 000800 000801 tctgtgataa aactagaaac accctatctg tgaaaatgct ttgtgatgtg tggatttttc tcatcgaatg gaacctctgt 000880 000881 tttgactcac aagggtgaaa cactatttta gtagaatcta ggaagaaaca tatctgagcc catttatgcc tacagtgaga 000960 000961 aactgaatac cctgcaataa aaagtagaca gaagctattt gtaaaaatgc tttgtgatgt gtggattcag tgttaaactt 001040 001041 ttattttgat tccacagttt tgacacccta tttgtagaat atatgaatga acatttctca gc |
Predicted Small Protein
| Name | NONHSAT063981_smProtein_404:646 |
| Length | 81 |
| Molecular weight | 9342.6431 |
| Aromaticity | 0.1 |
| Instability index | 47.05375 |
| Isoelectric point | 9.23638916016 |
| Runs | 15 |
| Runs residual | 0.0486842105263 |
| Runs probability | 0.0489430607079 |
| Amino acid sequence | MYTDTDLMLVSPAEHPGHLQTPRRVLSATALTCWPSRHLFSTHLMTEVSGWKHSFCRTYK WTFLSTLRPIMKNQISHNEN |
| Secondary structure | LLLLLLEEEELLLLLLLLLLLHHHHHLLLEEELLLLLLEEELEEEEEELLLLLLEEEEEL LHHHHHHHHHHHHHHLLLLL |
| PRMN | - |
| PiMo | - |
