Difference between revisions of "NONHSAT066249"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATTGTCATTTTCAGGAAGAATGGAGTTCAGGCGATGGTGGAATTTGACTCAGTTCAAAGTGCCCAGCGGGCCAAGGCCTCTCTCAATGGGGCTGATATCTATTCTGGCTGTTGCACTCTGAAGATCGAATACGCAAAGCCTACACGCTTGAATGTGTTCAAGAATGATCAGGATACTTGGGACTACACAAACCCCAATCTCAGTGGACAAGCTGAGAGGCCAGAGCCCCCCATTCCTAGGCAGGCCTGTCTTGCTCGCCCTTGCATCTGGGAAGCAGTGGGCAGGGTGGGCTAGACTCTTCCCCAGGATCCTCACAGTGGGCCCTGTGGGCCTGGCTGCTCCCTCCAAAGGTCAGAGGCAAATTGGTGACCAAGTGAATGTACCAGAGCGGGCAATGGCATTACATGACTGCTAACAGAAACATGGCAACAACCATTTCTTCTCCAAGGAACATAAATAGAAGATGTGCAGACCGGCAGGGGCTAGTGGCAGGGGGCTGGCTGTGCATTGGTTTTGATGCCTCTCAGCTTTGGCAGCCCCAAGGCTGGGGCCCAAAAAAAAACGAGGGCTGATGAGGTGACCTGGAGTGAGGGCGGTGCTTCGCCACCCCTCAGGAACCATACTTCAGCGGCTCTGCCTCTGCACATTGCTCACCAACACACAGGGTAGAAAACCACTAGCTCTTCCTGGAGAGAACAGAACATGCAGCCTCCACCACGTCCCCAGAAACAGCCGCAGACTTGAGCTCACTACATCAAGAACACCACACCGCGCTCCAAGGAACAGCTACAAGCACAGAGACAGAGGCATACAGAGACAAAGAGAGAAAGAGACGCAACATGGCAGCAGACACTGCTTTTTTTATTAAACATTAAAAAAAAGGTCAAAATCCAAGCAAACTTGAACCCGAGAATGTACACAGAAGTAGGAAACACAGAGAACAGAGCTGTCCCAGCCAGCCAGCGAGCGATGCTCTTTTCGGAGAACGTTTCATAGACGGAAGTAGATTCCATGGGCCTCCAAGACAATAGGATCCTCTCTCCATTCCTCGCCATATGGGTTTTGTTTTTTAAGTCATTTGGTTTGGGGAGGGCCTTGTTTTTTTTCTGTTTTGATATTTTTATTTTTTCTGCAGTCACCGGCTGCCAACATAATCTGCACCAACTGGAGATCAGaaaccaaaaaaaaaaaaaaaaattttaaccacaacaaaaaaaaaatcaaaaaaaccaaaacagacctaaaaccagaCAGCCAAACAGCTCAGAGGCACACAGTTACCTGCTGCCGGGTAACCAGGCGCGCTCCCAAGGCCAAAAGCGCGAGCGTAGTGGGGCCACTGGCACACCTCATACCAGGAGACACGCACACGGAGCGCTACACAGCCAGAAGCACCGCACCACCGCACTGCAGCACATATGTGAGGAGGTGACAACATGGAGGGACACTACCCACTTCATACACCTTTATTTCCACTTTTCTGATATCTTCTGAGGACAGAACATCTGTGAGCCATTTTTGATTTAATCAAAATATTGACTTTTAAAACAATTCTTTAAAAAAATTGTAGCGGATGTGTACCGTGACTTGTATTTATGACTGTAAAACCATGTGATGCAGGGTCGCAGTGTATGTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCACTGTTGAAGCGTCCAATGGTAAGAGAAAATACAGATTTGTTTTTTGTGACAAATGGACATTGTACTCTGTACTTCTGCTGTAAGTAGTCCTTTTCCATTTTGTAATGACTGGTAACAAAACCCAGGCCGGGTggcaggaaagggcagtggtttcgagccctgggttttggagtcagccagacctgggttcaaatatggctcagccactgtcttgctttgtgactttgggccaaagtgtcttttaactgctcagttaaaagttaacaactcagtcttcttatctgtaaaatggggctgaaatatcagaacctacctcatagggttgttgtgaggaatttcagaagctgtgatgtctgtaaagcgcttagcccagtgcctgccacttaagcgctaagttaaaggcagTGATTACGAACTGCTGGGGTCGGGGTGGATCTGCGCCATTGCTGGGTGTGGGAATGTCGATGCCTTGTACATGATTGCTTATTTGAACTGATTCTGCTGTTGCCCTGCTTGTCAGCTACAGTCAGTCCCTCTTGGGCTGGCGGGACTGGGAGGGAGGGGGGACTGGGATTAAGAAAGAAGGGATCTAACAGAGACAGTCTGGAGCTCCTAGAACTTTGGGGGCTTTGGGGGTCAAACTTGCTTGCTTCCCTCTGGGGTTATTTTCCTCTTAATCTACTCTCCCTTCATTGGGAGTCACTTTAGAAAGCTGCTTTTGGCCCGCCATAATATATCAGCTTCTGTAGCAGCTGCACATTCCCCAGAGGGCCTGGGAGCTGGGCTTTCTCCCAGGGCCAGGGTAGGTGAGAGCACAGAATCTGGCCTTGTCCTTCACAGAACAAGGCCAGCCCTTTGGTATGAGCAGGGGAAGGAGAGTGGGCACCAGCTTTGAGGCTCGGGCTTCATGCCCGCCGTAGGTCAGATCACAAAAGGAGGCCCCACAGCCCTCGAGGAAGGGAGGGCTTGCAGTTGGCAGGAGCTGGGGGCTCAGATCAGCCTGTGCAGTCAGGAGGGAGGGAGAGACCCCAATTTCTGAGTGAGACTCCTAACTGTTTTCTCTCTCCACAGG</dnaseq>| | sequence = <dnaseq>ATTGTCATTTTCAGGAAGAATGGAGTTCAGGCGATGGTGGAATTTGACTCAGTTCAAAGTGCCCAGCGGGCCAAGGCCTCTCTCAATGGGGCTGATATCTATTCTGGCTGTTGCACTCTGAAGATCGAATACGCAAAGCCTACACGCTTGAATGTGTTCAAGAATGATCAGGATACTTGGGACTACACAAACCCCAATCTCAGTGGACAAGCTGAGAGGCCAGAGCCCCCCATTCCTAGGCAGGCCTGTCTTGCTCGCCCTTGCATCTGGGAAGCAGTGGGCAGGGTGGGCTAGACTCTTCCCCAGGATCCTCACAGTGGGCCCTGTGGGCCTGGCTGCTCCCTCCAAAGGTCAGAGGCAAATTGGTGACCAAGTGAATGTACCAGAGCGGGCAATGGCATTACATGACTGCTAACAGAAACATGGCAACAACCATTTCTTCTCCAAGGAACATAAATAGAAGATGTGCAGACCGGCAGGGGCTAGTGGCAGGGGGCTGGCTGTGCATTGGTTTTGATGCCTCTCAGCTTTGGCAGCCCCAAGGCTGGGGCCCAAAAAAAAACGAGGGCTGATGAGGTGACCTGGAGTGAGGGCGGTGCTTCGCCACCCCTCAGGAACCATACTTCAGCGGCTCTGCCTCTGCACATTGCTCACCAACACACAGGGTAGAAAACCACTAGCTCTTCCTGGAGAGAACAGAACATGCAGCCTCCACCACGTCCCCAGAAACAGCCGCAGACTTGAGCTCACTACATCAAGAACACCACACCGCGCTCCAAGGAACAGCTACAAGCACAGAGACAGAGGCATACAGAGACAAAGAGAGAAAGAGACGCAACATGGCAGCAGACACTGCTTTTTTTATTAAACATTAAAAAAAAGGTCAAAATCCAAGCAAACTTGAACCCGAGAATGTACACAGAAGTAGGAAACACAGAGAACAGAGCTGTCCCAGCCAGCCAGCGAGCGATGCTCTTTTCGGAGAACGTTTCATAGACGGAAGTAGATTCCATGGGCCTCCAAGACAATAGGATCCTCTCTCCATTCCTCGCCATATGGGTTTTGTTTTTTAAGTCATTTGGTTTGGGGAGGGCCTTGTTTTTTTTCTGTTTTGATATTTTTATTTTTTCTGCAGTCACCGGCTGCCAACATAATCTGCACCAACTGGAGATCAGaaaccaaaaaaaaaaaaaaaaattttaaccacaacaaaaaaaaaatcaaaaaaaccaaaacagacctaaaaccagaCAGCCAAACAGCTCAGAGGCACACAGTTACCTGCTGCCGGGTAACCAGGCGCGCTCCCAAGGCCAAAAGCGCGAGCGTAGTGGGGCCACTGGCACACCTCATACCAGGAGACACGCACACGGAGCGCTACACAGCCAGAAGCACCGCACCACCGCACTGCAGCACATATGTGAGGAGGTGACAACATGGAGGGACACTACCCACTTCATACACCTTTATTTCCACTTTTCTGATATCTTCTGAGGACAGAACATCTGTGAGCCATTTTTGATTTAATCAAAATATTGACTTTTAAAACAATTCTTTAAAAAAATTGTAGCGGATGTGTACCGTGACTTGTATTTATGACTGTAAAACCATGTGATGCAGGGTCGCAGTGTATGTTTGATGGGACGCCATCTTTCAGAACTGTGCTAACTCACTGTTGAAGCGTCCAATGGTAAGAGAAAATACAGATTTGTTTTTTGTGACAAATGGACATTGTACTCTGTACTTCTGCTGTAAGTAGTCCTTTTCCATTTTGTAATGACTGGTAACAAAACCCAGGCCGGGTggcaggaaagggcagtggtttcgagccctgggttttggagtcagccagacctgggttcaaatatggctcagccactgtcttgctttgtgactttgggccaaagtgtcttttaactgctcagttaaaagttaacaactcagtcttcttatctgtaaaatggggctgaaatatcagaacctacctcatagggttgttgtgaggaatttcagaagctgtgatgtctgtaaagcgcttagcccagtgcctgccacttaagcgctaagttaaaggcagTGATTACGAACTGCTGGGGTCGGGGTGGATCTGCGCCATTGCTGGGTGTGGGAATGTCGATGCCTTGTACATGATTGCTTATTTGAACTGATTCTGCTGTTGCCCTGCTTGTCAGCTACAGTCAGTCCCTCTTGGGCTGGCGGGACTGGGAGGGAGGGGGGACTGGGATTAAGAAAGAAGGGATCTAACAGAGACAGTCTGGAGCTCCTAGAACTTTGGGGGCTTTGGGGGTCAAACTTGCTTGCTTCCCTCTGGGGTTATTTTCCTCTTAATCTACTCTCCCTTCATTGGGAGTCACTTTAGAAAGCTGCTTTTGGCCCGCCATAATATATCAGCTTCTGTAGCAGCTGCACATTCCCCAGAGGGCCTGGGAGCTGGGCTTTCTCCCAGGGCCAGGGTAGGTGAGAGCACAGAATCTGGCCTTGTCCTTCACAGAACAAGGCCAGCCCTTTGGTATGAGCAGGGGAAGGAGAGTGGGCACCAGCTTTGAGGCTCGGGCTTCATGCCCGCCGTAGGTCAGATCACAAAAGGAGGCCCCACAGCCCTCGAGGAAGGGAGGGCTTGCAGTTGGCAGGAGCTGGGGGCTCAGATCAGCCTGTGCAGTCAGGAGGGAGGGAGAGACCCCAATTTCTGAGTGAGACTCCTAACTGTTTTCTCTCTCCACAGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG025760]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:56, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066249 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2744 nt |
Genomic location |
chr19-:39331199..39336330 |
Exon number |
4 |
Exons |
39331199..39333731,39334482..39334554,39334648..39334744,39336290..39336330 |
Genome context |
|
Sequence |
000001 ATTGTCATTT TCAGGAAGAA TGGAGTTCAG GCGATGGTGG AATTTGACTC AGTTCAAAGT GCCCAGCGGG CCAAGGCCTC 000080
000081 TCTCAATGGG GCTGATATCT ATTCTGGCTG TTGCACTCTG AAGATCGAAT ACGCAAAGCC TACACGCTTG AATGTGTTCA 000160 000161 AGAATGATCA GGATACTTGG GACTACACAA ACCCCAATCT CAGTGGACAA GCTGAGAGGC CAGAGCCCCC CATTCCTAGG 000240 000241 CAGGCCTGTC TTGCTCGCCC TTGCATCTGG GAAGCAGTGG GCAGGGTGGG CTAGACTCTT CCCCAGGATC CTCACAGTGG 000320 000321 GCCCTGTGGG CCTGGCTGCT CCCTCCAAAG GTCAGAGGCA AATTGGTGAC CAAGTGAATG TACCAGAGCG GGCAATGGCA 000400 000401 TTACATGACT GCTAACAGAA ACATGGCAAC AACCATTTCT TCTCCAAGGA ACATAAATAG AAGATGTGCA GACCGGCAGG 000480 000481 GGCTAGTGGC AGGGGGCTGG CTGTGCATTG GTTTTGATGC CTCTCAGCTT TGGCAGCCCC AAGGCTGGGG CCCAAAAAAA 000560 000561 AACGAGGGCT GATGAGGTGA CCTGGAGTGA GGGCGGTGCT TCGCCACCCC TCAGGAACCA TACTTCAGCG GCTCTGCCTC 000640 000641 TGCACATTGC TCACCAACAC ACAGGGTAGA AAACCACTAG CTCTTCCTGG AGAGAACAGA ACATGCAGCC TCCACCACGT 000720 000721 CCCCAGAAAC AGCCGCAGAC TTGAGCTCAC TACATCAAGA ACACCACACC GCGCTCCAAG GAACAGCTAC AAGCACAGAG 000800 000801 ACAGAGGCAT ACAGAGACAA AGAGAGAAAG AGACGCAACA TGGCAGCAGA CACTGCTTTT TTTATTAAAC ATTAAAAAAA 000880 000881 AGGTCAAAAT CCAAGCAAAC TTGAACCCGA GAATGTACAC AGAAGTAGGA AACACAGAGA ACAGAGCTGT CCCAGCCAGC 000960 000961 CAGCGAGCGA TGCTCTTTTC GGAGAACGTT TCATAGACGG AAGTAGATTC CATGGGCCTC CAAGACAATA GGATCCTCTC 001040 001041 TCCATTCCTC GCCATATGGG TTTTGTTTTT TAAGTCATTT GGTTTGGGGA GGGCCTTGTT TTTTTTCTGT TTTGATATTT 001120 001121 TTATTTTTTC TGCAGTCACC GGCTGCCAAC ATAATCTGCA CCAACTGGAG ATCAGaaacc aaaaaaaaaa aaaaaaattt 001200 001201 taaccacaac aaaaaaaaaa tcaaaaaaac caaaacagac ctaaaaccag aCAGCCAAAC AGCTCAGAGG CACACAGTTA 001280 001281 CCTGCTGCCG GGTAACCAGG CGCGCTCCCA AGGCCAAAAG CGCGAGCGTA GTGGGGCCAC TGGCACACCT CATACCAGGA 001360 001361 GACACGCACA CGGAGCGCTA CACAGCCAGA AGCACCGCAC CACCGCACTG CAGCACATAT GTGAGGAGGT GACAACATGG 001440 001441 AGGGACACTA CCCACTTCAT ACACCTTTAT TTCCACTTTT CTGATATCTT CTGAGGACAG AACATCTGTG AGCCATTTTT 001520 001521 GATTTAATCA AAATATTGAC TTTTAAAACA ATTCTTTAAA AAAATTGTAG CGGATGTGTA CCGTGACTTG TATTTATGAC 001600 001601 TGTAAAACCA TGTGATGCAG GGTCGCAGTG TATGTTTGAT GGGACGCCAT CTTTCAGAAC TGTGCTAACT CACTGTTGAA 001680 001681 GCGTCCAATG GTAAGAGAAA ATACAGATTT GTTTTTTGTG ACAAATGGAC ATTGTACTCT GTACTTCTGC TGTAAGTAGT 001760 001761 CCTTTTCCAT TTTGTAATGA CTGGTAACAA AACCCAGGCC GGGTggcagg aaagggcagt ggtttcgagc cctgggtttt 001840 001841 ggagtcagcc agacctgggt tcaaatatgg ctcagccact gtcttgcttt gtgactttgg gccaaagtgt cttttaactg 001920 001921 ctcagttaaa agttaacaac tcagtcttct tatctgtaaa atggggctga aatatcagaa cctacctcat agggttgttg 002000 002001 tgaggaattt cagaagctgt gatgtctgta aagcgcttag cccagtgcct gccacttaag cgctaagtta aaggcagTGA 002080 002081 TTACGAACTG CTGGGGTCGG GGTGGATCTG CGCCATTGCT GGGTGTGGGA ATGTCGATGC CTTGTACATG ATTGCTTATT 002160 002161 TGAACTGATT CTGCTGTTGC CCTGCTTGTC AGCTACAGTC AGTCCCTCTT GGGCTGGCGG GACTGGGAGG GAGGGGGGAC 002240 002241 TGGGATTAAG AAAGAAGGGA TCTAACAGAG ACAGTCTGGA GCTCCTAGAA CTTTGGGGGC TTTGGGGGTC AAACTTGCTT 002320 002321 GCTTCCCTCT GGGGTTATTT TCCTCTTAAT CTACTCTCCC TTCATTGGGA GTCACTTTAG AAAGCTGCTT TTGGCCCGCC 002400 002401 ATAATATATC AGCTTCTGTA GCAGCTGCAC ATTCCCCAGA GGGCCTGGGA GCTGGGCTTT CTCCCAGGGC CAGGGTAGGT 002480 002481 GAGAGCACAG AATCTGGCCT TGTCCTTCAC AGAACAAGGC CAGCCCTTTG GTATGAGCAG GGGAAGGAGA GTGGGCACCA 002560 002561 GCTTTGAGGC TCGGGCTTCA TGCCCGCCGT AGGTCAGATC ACAAAAGGAG GCCCCACAGC CCTCGAGGAA GGGAGGGCTT 002640 002641 GCAGTTGGCA GGAGCTGGGG GCTCAGATCA GCCTGTGCAG TCAGGAGGGA GGGAGAGACC CCAATTTCTG AGTGAGACTC 002720 002721 CTAACTGTTT TCTCTCTCCA CAGG |
Predicted Small Protein
Name | NONHSAT066249_smProtein_377:571 |
Length | 65 |
Molecular weight | 7242.0813 |
Aromaticity | 0.109375 |
Instability index | 88.940625 |
Isoelectric point | 9.69073486328 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0405726582198 |
Amino acid sequence | MYQSGQWHYMTANRNMATTISSPRNINRRCADRQGLVAGGWLCIGFDASQLWQPQGWGPK KNEG |
Secondary structure | LLLLLEEEEEELLLLEEEEELLLHHHHHHHHLLLLEEELLEEEEEELLLLLLLLLLLLLL LLLL |
PRMN | - |
PiMo | - |