Difference between revisions of "NONHSAT069684"
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sequence = <dnaseq>TGTGCTGCGGAAACAGATGCAGCACCAGTTGAACCAAGCGGGCCCTGTTCTGGATGGTCCCTGCCTCAGAGAGGTGCAGAAACAGCATAGAAGACATGCTGGGGGGTGGGGTGCCTTTAGCTTGCTGGAACAGTGAGGAGGCTGTGGGGCAGAGGGAAAGCTCTGCCCCTTTCAGTGCAGTATAAGCCCAACTTCCGACTGCTGTGCAGAGAGAGGGCACCAGGGACCTTCCTAGACAAGAGCAGGAGTTGGTGTATCAGAAGGAAGCTTGGTCCTTATCTTGACATCATGAGTTTTAGAGTGACTGAAGGAGTGGAAGATGCCGCAAACACTCTGGAGAGCAGTACCAACCTGGAGGATTCGGATGACTTCAGACATCATGGGCGCAAGACACCTGGTAGTATAGAAGCCAGGTCCATCCTGCCAAGGAAGAGAACATGAGCTCACTGGCCCTGCTGCTGGGACTGAGTCTGAAACACTCTACCTTTCCCAGGGTCACTTCAAAGTCATTTGAAAGTCACTGTAAAACTTAAGGTGACTTAAAATCTCAATCAGAATCCTTAAAAATGAAATTGCAGGGGAAGCCGTACTAGGGGTAGCCTGGCTTGAATCAAACAGTACAGCAGATAGTTTCATGGTCACCTTCAAGGTCTGGGATGGCTGGGAGAACCCTGCCACATCCTAGATACTCCCCACTCCCACCTTGACTCAGTGGGACAGTCAATACCACCGTCCATCCTGGAGACAACCCAGGGGAAAATCATATCAAAGTCTGGTCATTTGCCCCAGAATATTTATAAACAAGCCTGGAGGTAAAAGGAGTCTTATTAGAACTTTTCAAAAACTCTGCAGCTCTGTTATACAGCCCCTTACCTTAACCACAATGATGACCTTCCCCTGCTTGAGACCAACTGCTACAGCTGAAGCACTGGTGTCTTTGGAAGTTTTCTCGGTCGTGATAATCTCCAGCAGCTGCATCTTGTCCACGGGAGAGAAGTAGTGCATGCCAATCACCTGGCAAGGGGAACCAAAAGCCAACAGATCGGAGAATGCGGGTGAGGAACCTGAGAGCATTCCTTCTCTGCTAGGAAAACACTAGAAAGAAAGGTGGCTGTGATATAGGAATACTGCTTGACATAGCTGAGTGGTTTGGTTCCATGGGTCTTTGATAAAAGTTTAGTATGTTTAGGGAGAGCACATTGGAATCCTCCTCTTCCATTTGCTTCTAAGGTTTTTCACTACAGACATCTGATCCTCCCAACAATCAGTGCCAAAACCGCAGCTCGAGGCCAAACTAGATTTATTGGGGAACGACGGATGAAGGTTCCACTTATATTAATGATACTGATGGTTTAGATAAGAGGATCCAGTTTTTTTGGGCGGGGGTGGGGCAGGCAGAAGAATTAATGTGTTGGGCTGTCAGAGAAGTATTTGCATTTTACACAGATGGGTCTCACCACCAGGATACTAGGTTTAACTAACACTCCTCAACAGTCAAATGCACTTAAGACTCATTAAACCAGCAGTTCTCCAAGTGTAGTACCCGGACCCAACAAGCACTGTCATCACCTGGGAGCGTTAGGCCTGCACATTCTCAGGCCTAGCCCAGCCCTACTGAATCAGAAACTCCATGGGTGGGGCCCAGATTTGTTTTAATAATCCCTCCTGGTGATTCTGATGCGTGCTAAGGCTTCAGAGAACCCCCTCATTGAGCTAACAGTTACATAGTCTTCCCAACAGAACTGTGGTGAAAGAAGTCTAATTCATTAATTTATAGTTTTGCTTTCTCCCTCTCACTTTAGCTATAAGGTACAACAAGTGATATCTGTAATTTTTGGCTGCTCATTATCTACCTGCTCTTCAATACATTTACCACTTATTCCTTACATTTAATCCATTACAACCCTATGAACTGGTCAGCCTAATTATCTAGATGAGGAAAAAAGGTATCAAGAGGTTAGTAGTACAGAGTCAGTCAGCATATGACGGGGTGGGATTCCATCACAGGTCTGTCTATCTCCAATGCCATTATGTAATACACAGATCAAGTAAATGTTATGTAAACTTATCAATCCAAAAGTTGTTTCTAACCCCTAAAGTGTTCTTTTACTTACATCTGAAATACTTAGGACCTGATTCAGACTCAGTACTCCTGAGCAAAAGGAATTAGCCTTTATTGATGTAGAATTTCTATATAATAAAATGCACAGATCTTGAAGTGTTCACATC</dnaseq>| | sequence = <dnaseq>TGTGCTGCGGAAACAGATGCAGCACCAGTTGAACCAAGCGGGCCCTGTTCTGGATGGTCCCTGCCTCAGAGAGGTGCAGAAACAGCATAGAAGACATGCTGGGGGGTGGGGTGCCTTTAGCTTGCTGGAACAGTGAGGAGGCTGTGGGGCAGAGGGAAAGCTCTGCCCCTTTCAGTGCAGTATAAGCCCAACTTCCGACTGCTGTGCAGAGAGAGGGCACCAGGGACCTTCCTAGACAAGAGCAGGAGTTGGTGTATCAGAAGGAAGCTTGGTCCTTATCTTGACATCATGAGTTTTAGAGTGACTGAAGGAGTGGAAGATGCCGCAAACACTCTGGAGAGCAGTACCAACCTGGAGGATTCGGATGACTTCAGACATCATGGGCGCAAGACACCTGGTAGTATAGAAGCCAGGTCCATCCTGCCAAGGAAGAGAACATGAGCTCACTGGCCCTGCTGCTGGGACTGAGTCTGAAACACTCTACCTTTCCCAGGGTCACTTCAAAGTCATTTGAAAGTCACTGTAAAACTTAAGGTGACTTAAAATCTCAATCAGAATCCTTAAAAATGAAATTGCAGGGGAAGCCGTACTAGGGGTAGCCTGGCTTGAATCAAACAGTACAGCAGATAGTTTCATGGTCACCTTCAAGGTCTGGGATGGCTGGGAGAACCCTGCCACATCCTAGATACTCCCCACTCCCACCTTGACTCAGTGGGACAGTCAATACCACCGTCCATCCTGGAGACAACCCAGGGGAAAATCATATCAAAGTCTGGTCATTTGCCCCAGAATATTTATAAACAAGCCTGGAGGTAAAAGGAGTCTTATTAGAACTTTTCAAAAACTCTGCAGCTCTGTTATACAGCCCCTTACCTTAACCACAATGATGACCTTCCCCTGCTTGAGACCAACTGCTACAGCTGAAGCACTGGTGTCTTTGGAAGTTTTCTCGGTCGTGATAATCTCCAGCAGCTGCATCTTGTCCACGGGAGAGAAGTAGTGCATGCCAATCACCTGGCAAGGGGAACCAAAAGCCAACAGATCGGAGAATGCGGGTGAGGAACCTGAGAGCATTCCTTCTCTGCTAGGAAAACACTAGAAAGAAAGGTGGCTGTGATATAGGAATACTGCTTGACATAGCTGAGTGGTTTGGTTCCATGGGTCTTTGATAAAAGTTTAGTATGTTTAGGGAGAGCACATTGGAATCCTCCTCTTCCATTTGCTTCTAAGGTTTTTCACTACAGACATCTGATCCTCCCAACAATCAGTGCCAAAACCGCAGCTCGAGGCCAAACTAGATTTATTGGGGAACGACGGATGAAGGTTCCACTTATATTAATGATACTGATGGTTTAGATAAGAGGATCCAGTTTTTTTGGGCGGGGGTGGGGCAGGCAGAAGAATTAATGTGTTGGGCTGTCAGAGAAGTATTTGCATTTTACACAGATGGGTCTCACCACCAGGATACTAGGTTTAACTAACACTCCTCAACAGTCAAATGCACTTAAGACTCATTAAACCAGCAGTTCTCCAAGTGTAGTACCCGGACCCAACAAGCACTGTCATCACCTGGGAGCGTTAGGCCTGCACATTCTCAGGCCTAGCCCAGCCCTACTGAATCAGAAACTCCATGGGTGGGGCCCAGATTTGTTTTAATAATCCCTCCTGGTGATTCTGATGCGTGCTAAGGCTTCAGAGAACCCCCTCATTGAGCTAACAGTTACATAGTCTTCCCAACAGAACTGTGGTGAAAGAAGTCTAATTCATTAATTTATAGTTTTGCTTTCTCCCTCTCACTTTAGCTATAAGGTACAACAAGTGATATCTGTAATTTTTGGCTGCTCATTATCTACCTGCTCTTCAATACATTTACCACTTATTCCTTACATTTAATCCATTACAACCCTATGAACTGGTCAGCCTAATTATCTAGATGAGGAAAAAAGGTATCAAGAGGTTAGTAGTACAGAGTCAGTCAGCATATGACGGGGTGGGATTCCATCACAGGTCTGTCTATCTCCAATGCCATTATGTAATACACAGATCAAGTAAATGTTATGTAAACTTATCAATCCAAAAGTTGTTTCTAACCCCTAAAGTGTTCTTTTACTTACATCTGAAATACTTAGGACCTGATTCAGACTCAGTACTCCTGAGCAAAAGGAATTAGCCTTTATTGATGTAGAATTTCTATATAATAAAATGCACAGATCTTGAAGTGTTCACATC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG027276]] | + | [[Category:Antisense]][[Category:NONHSAG027276]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069684 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2229 nt |
Genomic location |
chr2+:26417088..26419316 |
Exon number |
1 |
Exons |
26417088..26419316 |
Genome context |
|
Sequence |
000001 TGTGCTGCGG AAACAGATGC AGCACCAGTT GAACCAAGCG GGCCCTGTTC TGGATGGTCC CTGCCTCAGA GAGGTGCAGA 000080
000081 AACAGCATAG AAGACATGCT GGGGGGTGGG GTGCCTTTAG CTTGCTGGAA CAGTGAGGAG GCTGTGGGGC AGAGGGAAAG 000160 000161 CTCTGCCCCT TTCAGTGCAG TATAAGCCCA ACTTCCGACT GCTGTGCAGA GAGAGGGCAC CAGGGACCTT CCTAGACAAG 000240 000241 AGCAGGAGTT GGTGTATCAG AAGGAAGCTT GGTCCTTATC TTGACATCAT GAGTTTTAGA GTGACTGAAG GAGTGGAAGA 000320 000321 TGCCGCAAAC ACTCTGGAGA GCAGTACCAA CCTGGAGGAT TCGGATGACT TCAGACATCA TGGGCGCAAG ACACCTGGTA 000400 000401 GTATAGAAGC CAGGTCCATC CTGCCAAGGA AGAGAACATG AGCTCACTGG CCCTGCTGCT GGGACTGAGT CTGAAACACT 000480 000481 CTACCTTTCC CAGGGTCACT TCAAAGTCAT TTGAAAGTCA CTGTAAAACT TAAGGTGACT TAAAATCTCA ATCAGAATCC 000560 000561 TTAAAAATGA AATTGCAGGG GAAGCCGTAC TAGGGGTAGC CTGGCTTGAA TCAAACAGTA CAGCAGATAG TTTCATGGTC 000640 000641 ACCTTCAAGG TCTGGGATGG CTGGGAGAAC CCTGCCACAT CCTAGATACT CCCCACTCCC ACCTTGACTC AGTGGGACAG 000720 000721 TCAATACCAC CGTCCATCCT GGAGACAACC CAGGGGAAAA TCATATCAAA GTCTGGTCAT TTGCCCCAGA ATATTTATAA 000800 000801 ACAAGCCTGG AGGTAAAAGG AGTCTTATTA GAACTTTTCA AAAACTCTGC AGCTCTGTTA TACAGCCCCT TACCTTAACC 000880 000881 ACAATGATGA CCTTCCCCTG CTTGAGACCA ACTGCTACAG CTGAAGCACT GGTGTCTTTG GAAGTTTTCT CGGTCGTGAT 000960 000961 AATCTCCAGC AGCTGCATCT TGTCCACGGG AGAGAAGTAG TGCATGCCAA TCACCTGGCA AGGGGAACCA AAAGCCAACA 001040 001041 GATCGGAGAA TGCGGGTGAG GAACCTGAGA GCATTCCTTC TCTGCTAGGA AAACACTAGA AAGAAAGGTG GCTGTGATAT 001120 001121 AGGAATACTG CTTGACATAG CTGAGTGGTT TGGTTCCATG GGTCTTTGAT AAAAGTTTAG TATGTTTAGG GAGAGCACAT 001200 001201 TGGAATCCTC CTCTTCCATT TGCTTCTAAG GTTTTTCACT ACAGACATCT GATCCTCCCA ACAATCAGTG CCAAAACCGC 001280 001281 AGCTCGAGGC CAAACTAGAT TTATTGGGGA ACGACGGATG AAGGTTCCAC TTATATTAAT GATACTGATG GTTTAGATAA 001360 001361 GAGGATCCAG TTTTTTTGGG CGGGGGTGGG GCAGGCAGAA GAATTAATGT GTTGGGCTGT CAGAGAAGTA TTTGCATTTT 001440 001441 ACACAGATGG GTCTCACCAC CAGGATACTA GGTTTAACTA ACACTCCTCA ACAGTCAAAT GCACTTAAGA CTCATTAAAC 001520 001521 CAGCAGTTCT CCAAGTGTAG TACCCGGACC CAACAAGCAC TGTCATCACC TGGGAGCGTT AGGCCTGCAC ATTCTCAGGC 001600 001601 CTAGCCCAGC CCTACTGAAT CAGAAACTCC ATGGGTGGGG CCCAGATTTG TTTTAATAAT CCCTCCTGGT GATTCTGATG 001680 001681 CGTGCTAAGG CTTCAGAGAA CCCCCTCATT GAGCTAACAG TTACATAGTC TTCCCAACAG AACTGTGGTG AAAGAAGTCT 001760 001761 AATTCATTAA TTTATAGTTT TGCTTTCTCC CTCTCACTTT AGCTATAAGG TACAACAAGT GATATCTGTA ATTTTTGGCT 001840 001841 GCTCATTATC TACCTGCTCT TCAATACATT TACCACTTAT TCCTTACATT TAATCCATTA CAACCCTATG AACTGGTCAG 001920 001921 CCTAATTATC TAGATGAGGA AAAAAGGTAT CAAGAGGTTA GTAGTACAGA GTCAGTCAGC ATATGACGGG GTGGGATTCC 002000 002001 ATCACAGGTC TGTCTATCTC CAATGCCATT ATGTAATACA CAGATCAAGT AAATGTTATG TAAACTTATC AATCCAAAAG 002080 002081 TTGTTTCTAA CCCCTAAAGT GTTCTTTTAC TTACATCTGA AATACTTAGG ACCTGATTCA GACTCAGTAC TCCTGAGCAA 002160 002161 AAGGAATTAG CCTTTATTGA TGTAGAATTT CTATATAATA AAATGCACAG ATCTTGAAGT GTTCACATC |
Predicted Small Protein
Name | NONHSAT069684_smProtein_53:184 |
Length | 44 |
Molecular weight | 4539.0266 |
Aromaticity | 0.046511627907 |
Instability index | 97.588372093 |
Isoelectric point | 4.42047119141 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0456633103692 |
Amino acid sequence | MVPASERCRNSIEDMLGGGVPLACWNSEEAVGQRESSAPFSAV |
Secondary structure | LLLLLLLLHHHHHHHHLLLLLEEELLLHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |