Difference between revisions of "NONHSAT070366"

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sequence = <dnaseq>GAAGGGGAGGAAGTGAAGATCTTCAGACTAAGATGGATGAAGCTGAATTCAGATCTCAGCTCCAAGGTGAATGAGCAAACAGCACAGAAAAAGAAACAGCAGTATATGTGGAAGAAAGCAAGAAAAATCAACTGGCCTGGAACCTAAGACTTGTCCAAAGATGTCACAGAGAGTAAAATGAGAAAAATCCAGTAGCCCGTGCCCAGAGCAGTTCCTCGTACCCAGCAGAAGGCTAACAAGCCCTGAGATGAATGATGCTCTTCCCAAGGAAGGCAGAGGAGGCGACAGTCCATTTGCGTTCTCTCCTCTGCAAGTACAGGATCTCGTTTGATTCTCAAAACCACCCTAGAGGAGACAGGAGGCACCTGAGGCCCAGAGACGTGAAGCCACCTGTCCAAGGCCATACAGCAGATAACTTATTCTGGAGGAAGACACCTGCCATGCCGTGAGGACAGTCAAGCAGTTCTGTGGAGAGATCCATGTGGTGAGAAACAGGGGCCTCCTGTCAACAGGAAGAACAACCTGGCAGGCCTGTCTTGGATTCAGAGCCTCCAGCCCCAGTCGAGCCTTCAGATAACTGCACCCTTGGCTGTCATCTCAACTGCAATCTCACGACAGACCCTGAGCTGGAACTACTCTGTTTACCAATGCCTGGCCCACAGAAAGACTATGAGATAAAACAAGTATATTGTTTTTAGAAGATATGTTTTGGAGTAATTTATTATGC</dnaseq>|
 
sequence = <dnaseq>GAAGGGGAGGAAGTGAAGATCTTCAGACTAAGATGGATGAAGCTGAATTCAGATCTCAGCTCCAAGGTGAATGAGCAAACAGCACAGAAAAAGAAACAGCAGTATATGTGGAAGAAAGCAAGAAAAATCAACTGGCCTGGAACCTAAGACTTGTCCAAAGATGTCACAGAGAGTAAAATGAGAAAAATCCAGTAGCCCGTGCCCAGAGCAGTTCCTCGTACCCAGCAGAAGGCTAACAAGCCCTGAGATGAATGATGCTCTTCCCAAGGAAGGCAGAGGAGGCGACAGTCCATTTGCGTTCTCTCCTCTGCAAGTACAGGATCTCGTTTGATTCTCAAAACCACCCTAGAGGAGACAGGAGGCACCTGAGGCCCAGAGACGTGAAGCCACCTGTCCAAGGCCATACAGCAGATAACTTATTCTGGAGGAAGACACCTGCCATGCCGTGAGGACAGTCAAGCAGTTCTGTGGAGAGATCCATGTGGTGAGAAACAGGGGCCTCCTGTCAACAGGAAGAACAACCTGGCAGGCCTGTCTTGGATTCAGAGCCTCCAGCCCCAGTCGAGCCTTCAGATAACTGCACCCTTGGCTGTCATCTCAACTGCAATCTCACGACAGACCCTGAGCTGGAACTACTCTGTTTACCAATGCCTGGCCCACAGAAAGACTATGAGATAAAACAAGTATATTGTTTTTAGAAGATATGTTTTGGAGTAATTTATTATGC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG027598]]
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[[Category:Intergenic]][[Category:NONHSAG027598]][[Category:Transcripts]]

Latest revision as of 23:17, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT070366

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

727 nt

Genomic location

chr2-:43199835..43251311

Exon number

4

Exons

43199835..43200150,43207423..43207609,43228463..43228620,43251246..43251311

Genome context

Sequence
000001 GAAGGGGAGG AAGTGAAGAT CTTCAGACTA AGATGGATGA AGCTGAATTC AGATCTCAGC TCCAAGGTGA ATGAGCAAAC 000080
000081 AGCACAGAAA AAGAAACAGC AGTATATGTG GAAGAAAGCA AGAAAAATCA ACTGGCCTGG AACCTAAGAC TTGTCCAAAG 000160
000161 ATGTCACAGA GAGTAAAATG AGAAAAATCC AGTAGCCCGT GCCCAGAGCA GTTCCTCGTA CCCAGCAGAA GGCTAACAAG 000240
000241 CCCTGAGATG AATGATGCTC TTCCCAAGGA AGGCAGAGGA GGCGACAGTC CATTTGCGTT CTCTCCTCTG CAAGTACAGG 000320
000321 ATCTCGTTTG ATTCTCAAAA CCACCCTAGA GGAGACAGGA GGCACCTGAG GCCCAGAGAC GTGAAGCCAC CTGTCCAAGG 000400
000401 CCATACAGCA GATAACTTAT TCTGGAGGAA GACACCTGCC ATGCCGTGAG GACAGTCAAG CAGTTCTGTG GAGAGATCCA 000480
000481 TGTGGTGAGA AACAGGGGCC TCCTGTCAAC AGGAAGAACA ACCTGGCAGG CCTGTCTTGG ATTCAGAGCC TCCAGCCCCA 000560
000561 GTCGAGCCTT CAGATAACTG CACCCTTGGC TGTCATCTCA ACTGCAATCT CACGACAGAC CCTGAGCTGG AACTACTCTG 000640
000641 TTTACCAATG CCTGGCCCAC AGAAAGACTA TGAGATAAAA CAAGTATATT GTTTTTAGAA GATATGTTTT GGAGTAATTT 000720
000721 ATTATGC
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Predicted Small Protein

Name NONHSAT070366_smProtein_251:448
Length 66
Molecular weight 7707.87
Aromaticity 0.0769230769231
Instability index 55.22
Isoelectric point 10.8648071289
Runs 7
Runs residual 0.0425961538462
Runs probability 0.0428621899211
Amino acid sequence MMLFPRKAEEATVHLRSLLCKYRISFDSQNHPRGDRRHLRPRDVKPPVQGHTADNLFWRK
TPAMP
Secondary structure LLLLLLHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHL
LLLLL
PRMN -
PiMo -