Difference between revisions of "NONHSAT070610"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGAAGGTGTCTTGCTTACCCTTCGCCCTTCTCCGTGATTGTAAATTTCCTGAGGCCTCCCCAGTCACGCTGAACTAGTCTTGCTTTCTCACCCAATCTGGAGTAGAGTGGTACAGTCTTGGCTCACTGCAACCTCCACTTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTGCAGGCGCCCACCAACATACCAGGCTCAGCTCATCATGAAGAATGTCCATGTGACTTTGGTTAATAAAATAATAGATCCAGTGGACTGTAGTCTGTTTAACTGAGACCTCACACATAATGTCATGGTTGACAGTTACTGGTTGAAGGAAATCCATGTTGGGCTTCTGTGGATGCTGGATTCTTTCCTTCTGAGAAGAAATATAACACACTGACTTTGAGGTGATGGTGGAGAAAAAGTACAAGCAGAAGACTTTTCCCAACTTCTCCATAGCCTACATGCGTGTGGAAACACTTCAGGTTAACCACTTGAAGCTTCAGAGACTGCAGTGAGGCCCTGGCATAGGAACATGCTCATCACGGGCATGTTCACAGAGCAAAGCAGCCAGCGTGACTGCAGCACAGAGTAGGAAGGGTGTGGAAGGAGATGAGAGAGAATGAAGAGGGAATCTTTGAACTTGATTACCAAGGAGATGGGATGATAAATCCATCCAGCCACTCCAAGAAGCCAAGTTAAGGGATGGAAGCACTGATGAAGAGCACAGACAGAATCAAGTGTACATGCAGAACATATGGTAACCATATAAAGGGATGATGTCAAAATTCTCAGCCTCCTTGCTCTTCAGTATCTTCTTCCCCTTTACCTCGTCTGGATGGTGTATAATGAAGAGGCACCTAGCGGTGCCTCCTGCCTCTAGAGTAAGATTCAAGGGAGGATATATAGGCTCCTCCATAGGGTCAAGAGGTTTTCAAAGGCTGTGTTGTCCCATCCAGCTACCAAAACAAGAGACAAAATTGTGACCTGGAGTTGAAACTCTAGTGAGTGATAAAGAGGGGAAGTTTCCTAAAGCAGAAGTTCTCAGTCTGGGGGCTATCTGTGTGTTGTGTACTGAATTTTGTGTCCTCCCAAAATTCAGACGTTGAAGCCCTAGTCCCCATTGTGGTTGTATTTGGAGGTGGGGCTTTGGGAGATGATTAGAATTAGATTAGTTCATGAAGGTGAAGCCCTTCTGATGGGATTAGTACCCATACAAGAAGAGACACAAGATCCCTCTACCAATTATGCTAGCTCTCCTCTCTTTCTCTCTCCACCGTCTGGGATACTTCAGGAAGATGTCTGTCTGCAAACCAGGAAGAGGTCCCTCAAGCACTAAATCTGCTGGCACCTTGATCTTGGGCTTCCCAGCCTTTAGGACTGTGAGAAATCTTTGCTGTTTAAGCAATCCCATCTATGGTATTTTGTTATAGCAGGCCAAGCTGACTAAGACACTGTGGATACCTTGCATGCCTGGGAGGCTTGCACATCCTTGGACATTATAAGTAATATTTTTCTGAAAAGGGGCCATAACTCTCATCGGAGAGTCAAAAGACCAAGTCTATGACTCCCAAAAGATTATATACCACTGACGGAGTGGCCCTTGTGTTCTTATCCTGTAGAACCACAAGAAACTTGAGGATTGGGGATCCTAGTCCTGGCCTTCATTCCGTACTTGCATGACCAACATCTAAGAGTACTAACAAATATGATGAAATAAGAAAGATTCAAGAGGATACACATATTTTCTTTGTCCAATGTTGCTAATATCCACCTGAGAGTTTATTATCCATAATAAAATGTGGAATCCAGTCTGTACACCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGG</dnaseq>| | sequence = <dnaseq>AGAAGGTGTCTTGCTTACCCTTCGCCCTTCTCCGTGATTGTAAATTTCCTGAGGCCTCCCCAGTCACGCTGAACTAGTCTTGCTTTCTCACCCAATCTGGAGTAGAGTGGTACAGTCTTGGCTCACTGCAACCTCCACTTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTGCAGGCGCCCACCAACATACCAGGCTCAGCTCATCATGAAGAATGTCCATGTGACTTTGGTTAATAAAATAATAGATCCAGTGGACTGTAGTCTGTTTAACTGAGACCTCACACATAATGTCATGGTTGACAGTTACTGGTTGAAGGAAATCCATGTTGGGCTTCTGTGGATGCTGGATTCTTTCCTTCTGAGAAGAAATATAACACACTGACTTTGAGGTGATGGTGGAGAAAAAGTACAAGCAGAAGACTTTTCCCAACTTCTCCATAGCCTACATGCGTGTGGAAACACTTCAGGTTAACCACTTGAAGCTTCAGAGACTGCAGTGAGGCCCTGGCATAGGAACATGCTCATCACGGGCATGTTCACAGAGCAAAGCAGCCAGCGTGACTGCAGCACAGAGTAGGAAGGGTGTGGAAGGAGATGAGAGAGAATGAAGAGGGAATCTTTGAACTTGATTACCAAGGAGATGGGATGATAAATCCATCCAGCCACTCCAAGAAGCCAAGTTAAGGGATGGAAGCACTGATGAAGAGCACAGACAGAATCAAGTGTACATGCAGAACATATGGTAACCATATAAAGGGATGATGTCAAAATTCTCAGCCTCCTTGCTCTTCAGTATCTTCTTCCCCTTTACCTCGTCTGGATGGTGTATAATGAAGAGGCACCTAGCGGTGCCTCCTGCCTCTAGAGTAAGATTCAAGGGAGGATATATAGGCTCCTCCATAGGGTCAAGAGGTTTTCAAAGGCTGTGTTGTCCCATCCAGCTACCAAAACAAGAGACAAAATTGTGACCTGGAGTTGAAACTCTAGTGAGTGATAAAGAGGGGAAGTTTCCTAAAGCAGAAGTTCTCAGTCTGGGGGCTATCTGTGTGTTGTGTACTGAATTTTGTGTCCTCCCAAAATTCAGACGTTGAAGCCCTAGTCCCCATTGTGGTTGTATTTGGAGGTGGGGCTTTGGGAGATGATTAGAATTAGATTAGTTCATGAAGGTGAAGCCCTTCTGATGGGATTAGTACCCATACAAGAAGAGACACAAGATCCCTCTACCAATTATGCTAGCTCTCCTCTCTTTCTCTCTCCACCGTCTGGGATACTTCAGGAAGATGTCTGTCTGCAAACCAGGAAGAGGTCCCTCAAGCACTAAATCTGCTGGCACCTTGATCTTGGGCTTCCCAGCCTTTAGGACTGTGAGAAATCTTTGCTGTTTAAGCAATCCCATCTATGGTATTTTGTTATAGCAGGCCAAGCTGACTAAGACACTGTGGATACCTTGCATGCCTGGGAGGCTTGCACATCCTTGGACATTATAAGTAATATTTTTCTGAAAAGGGGCCATAACTCTCATCGGAGAGTCAAAAGACCAAGTCTATGACTCCCAAAAGATTATATACCACTGACGGAGTGGCCCTTGTGTTCTTATCCTGTAGAACCACAAGAAACTTGAGGATTGGGGATCCTAGTCCTGGCCTTCATTCCGTACTTGCATGACCAACATCTAAGAGTACTAACAAATATGATGAAATAAGAAAGATTCAAGAGGATACACATATTTTCTTTGTCCAATGTTGCTAATATCCACCTGAGAGTTTATTATCCATAATAAAATGTGGAATCCAGTCTGTACACCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG027711]][[Category:Transcripts]] |
Latest revision as of 23:18, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT070610 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1938 nt |
| Genomic location |
chr2-:48168835..48468141 |
| Exon number |
9 |
| Exons |
48168835..48169957,48170670..48170751,48172291..48172426,48175523..48175548,48223855..48223929,48230439..48230564,48392027..48392073,48407461..48407597,48468067..48468141 |
| Genome context |
|
| Sequence |
000001 AGAAGGTGTC TTGCTTACCC TTCGCCCTTC TCCGTGATTG TAAATTTCCT GAGGCCTCCC CAGTCACGCT GAACTAGTCT 000080
000081 TGCTTTCTCA CCCAATCTGG AGTAGAGTGG TACAGTCTTG GCTCACTGCA ACCTCCACTT CCCGGGTTCA AGCAATTCTC 000160 000161 CTGCCTCAGC CTCCTGAGTA GCTGGGATTG CAGGCGCCCA CCAACATACC AGGCTCAGCT CATCATGAAG AATGTCCATG 000240 000241 TGACTTTGGT TAATAAAATA ATAGATCCAG TGGACTGTAG TCTGTTTAAC TGAGACCTCA CACATAATGT CATGGTTGAC 000320 000321 AGTTACTGGT TGAAGGAAAT CCATGTTGGG CTTCTGTGGA TGCTGGATTC TTTCCTTCTG AGAAGAAATA TAACACACTG 000400 000401 ACTTTGAGGT GATGGTGGAG AAAAAGTACA AGCAGAAGAC TTTTCCCAAC TTCTCCATAG CCTACATGCG TGTGGAAACA 000480 000481 CTTCAGGTTA ACCACTTGAA GCTTCAGAGA CTGCAGTGAG GCCCTGGCAT AGGAACATGC TCATCACGGG CATGTTCACA 000560 000561 GAGCAAAGCA GCCAGCGTGA CTGCAGCACA GAGTAGGAAG GGTGTGGAAG GAGATGAGAG AGAATGAAGA GGGAATCTTT 000640 000641 GAACTTGATT ACCAAGGAGA TGGGATGATA AATCCATCCA GCCACTCCAA GAAGCCAAGT TAAGGGATGG AAGCACTGAT 000720 000721 GAAGAGCACA GACAGAATCA AGTGTACATG CAGAACATAT GGTAACCATA TAAAGGGATG ATGTCAAAAT TCTCAGCCTC 000800 000801 CTTGCTCTTC AGTATCTTCT TCCCCTTTAC CTCGTCTGGA TGGTGTATAA TGAAGAGGCA CCTAGCGGTG CCTCCTGCCT 000880 000881 CTAGAGTAAG ATTCAAGGGA GGATATATAG GCTCCTCCAT AGGGTCAAGA GGTTTTCAAA GGCTGTGTTG TCCCATCCAG 000960 000961 CTACCAAAAC AAGAGACAAA ATTGTGACCT GGAGTTGAAA CTCTAGTGAG TGATAAAGAG GGGAAGTTTC CTAAAGCAGA 001040 001041 AGTTCTCAGT CTGGGGGCTA TCTGTGTGTT GTGTACTGAA TTTTGTGTCC TCCCAAAATT CAGACGTTGA AGCCCTAGTC 001120 001121 CCCATTGTGG TTGTATTTGG AGGTGGGGCT TTGGGAGATG ATTAGAATTA GATTAGTTCA TGAAGGTGAA GCCCTTCTGA 001200 001201 TGGGATTAGT ACCCATACAA GAAGAGACAC AAGATCCCTC TACCAATTAT GCTAGCTCTC CTCTCTTTCT CTCTCCACCG 001280 001281 TCTGGGATAC TTCAGGAAGA TGTCTGTCTG CAAACCAGGA AGAGGTCCCT CAAGCACTAA ATCTGCTGGC ACCTTGATCT 001360 001361 TGGGCTTCCC AGCCTTTAGG ACTGTGAGAA ATCTTTGCTG TTTAAGCAAT CCCATCTATG GTATTTTGTT ATAGCAGGCC 001440 001441 AAGCTGACTA AGACACTGTG GATACCTTGC ATGCCTGGGA GGCTTGCACA TCCTTGGACA TTATAAGTAA TATTTTTCTG 001520 001521 AAAAGGGGCC ATAACTCTCA TCGGAGAGTC AAAAGACCAA GTCTATGACT CCCAAAAGAT TATATACCAC TGACGGAGTG 001600 001601 GCCCTTGTGT TCTTATCCTG TAGAACCACA AGAAACTTGA GGATTGGGGA TCCTAGTCCT GGCCTTCATT CCGTACTTGC 001680 001681 ATGACCAACA TCTAAGAGTA CTAACAAATA TGATGAAATA AGAAAGATTC AAGAGGATAC ACATATTTTC TTTGTCCAAT 001760 001761 GTTGCTAATA TCCACCTGAG AGTTTATTAT CCATAATAAA ATGTGGAATC CAGTCTGTAC ACCATGAAAA AAAAAAAAAA 001840 001841 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001920 001921 AAAAAAAAAA CCCCCGGG |
Predicted Small Protein
| Name | NONHSAT070610_smProtein_1157:1339 |
| Length | 61 |
| Molecular weight | 6744.7304 |
| Aromaticity | 0.0333333333333 |
| Instability index | 84.945 |
| Isoelectric point | 6.02789306641 |
| Runs | 9 |
| Runs residual | 0.000265957446809 |
| Runs probability | 0.0488331468724 |
| Amino acid sequence | MIRIRLVHEGEALLMGLVPIQEETQDPSTNYASSPLFLSPPSGILQEDVCLQTRKRSLKH |
| Secondary structure | LEEEEELLLLHHHHLLLLLLLLLLLLLLLLLLLLLLELLLLLLLLLHHHHHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
