Difference between revisions of "NONHSAT070616"
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sequence = <dnaseq>ATCCCCTGTTCAGCTCCTTTCTTTGAAGGGATGACAGCCGTGCTCACTAGTGGGGAGATCTTTTGCTTATTTCCCCTGGGGTCCTAAGAGATAAGAGGTCATGCCAGTGCTGGGCCAGTTTCCTGCAAGGCTCCACAGTATCCAGGAGGGGCCTCCGGGAGGAGGGCAGCGGCCTGAGGCACCTCCTCACACCTCCACTTCTGCTGTTGTCAGAGAGCTTCCTGGCTTCCTTTTGTGATCAGCTGGTCCTGGAAAGGCTGCAGCAGATGGCTGATTACCATAATGCGCAGAGCTTTAGAGGGTCCTGGGTGCAAACCCAGGCGTGACCAAGCCAAGAGCAGCTGCATCTAATGTGGCATGTGGAGCCAACATTAGGCTTTACCCACACACCCATTCCGACCTTTCCAATGAGAAGCCGATGGCGCAGTTCAGAACAGATGGCCAAGAGAAACACTAGGGAAAAGCCCTCCCAACCAGCTGTAGTaagactccgtctcaaaaaaaaaaaaaaaatagctttgtacaactcagtggtggtaggtaggtgataggaacc</dnaseq>| | sequence = <dnaseq>ATCCCCTGTTCAGCTCCTTTCTTTGAAGGGATGACAGCCGTGCTCACTAGTGGGGAGATCTTTTGCTTATTTCCCCTGGGGTCCTAAGAGATAAGAGGTCATGCCAGTGCTGGGCCAGTTTCCTGCAAGGCTCCACAGTATCCAGGAGGGGCCTCCGGGAGGAGGGCAGCGGCCTGAGGCACCTCCTCACACCTCCACTTCTGCTGTTGTCAGAGAGCTTCCTGGCTTCCTTTTGTGATCAGCTGGTCCTGGAAAGGCTGCAGCAGATGGCTGATTACCATAATGCGCAGAGCTTTAGAGGGTCCTGGGTGCAAACCCAGGCGTGACCAAGCCAAGAGCAGCTGCATCTAATGTGGCATGTGGAGCCAACATTAGGCTTTACCCACACACCCATTCCGACCTTTCCAATGAGAAGCCGATGGCGCAGTTCAGAACAGATGGCCAAGAGAAACACTAGGGAAAAGCCCTCCCAACCAGCTGTAGTaagactccgtctcaaaaaaaaaaaaaaaatagctttgtacaactcagtggtggtaggtaggtgataggaacc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG027716]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG027716]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:18, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT070616 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
556 nt |
| Genomic location |
chr2+:48423238..48425603 |
| Exon number |
2 |
| Exons |
48423238..48423721,48425532..48425603 |
| Genome context |
|
| Sequence |
000001 ATCCCCTGTT CAGCTCCTTT CTTTGAAGGG ATGACAGCCG TGCTCACTAG TGGGGAGATC TTTTGCTTAT TTCCCCTGGG 000080
000081 GTCCTAAGAG ATAAGAGGTC ATGCCAGTGC TGGGCCAGTT TCCTGCAAGG CTCCACAGTA TCCAGGAGGG GCCTCCGGGA 000160 000161 GGAGGGCAGC GGCCTGAGGC ACCTCCTCAC ACCTCCACTT CTGCTGTTGT CAGAGAGCTT CCTGGCTTCC TTTTGTGATC 000240 000241 AGCTGGTCCT GGAAAGGCTG CAGCAGATGG CTGATTACCA TAATGCGCAG AGCTTTAGAG GGTCCTGGGT GCAAACCCAG 000320 000321 GCGTGACCAA GCCAAGAGCA GCTGCATCTA ATGTGGCATG TGGAGCCAAC ATTAGGCTTT ACCCACACAC CCATTCCGAC 000400 000401 CTTTCCAATG AGAAGCCGAT GGCGCAGTTC AGAACAGATG GCCAAGAGAA ACACTAGGGA AAAGCCCTCC CAACCAGCTG 000480 000481 TAGTaagact ccgtctcaaa aaaaaaaaaa aaatagcttt gtacaactca gtggtggtag gtaggtgata ggaacc |
Predicted Small Protein
| Name | NONHSAT070616_smProtein_350:547 |
| Length | 66 |
| Molecular weight | 7658.9849 |
| Aromaticity | 0.0769230769231 |
| Instability index | 68.8184615385 |
| Isoelectric point | 11.8064575195 |
| Runs | 11 |
| Runs residual | 0.0189423076923 |
| Runs probability | 0.0384448619743 |
| Amino acid sequence | MWHVEPTLGFTHTPIPTFPMRSRWRSSEQMAKRNTREKPSQPAVVRLRLKKKKKIALYNS VVVGR |
| Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLEEEEEELLLLEEEEELL EEELL |
| PRMN | - |
| PiMo | - |
